Advanced Search (OLGA)

Gene: Eif3k (eukaryotic translation initiation factor 3 subunit K) Heterocephalus glaber

Subscribe to Updates

Analyze

Symbol:

Eif3k

Name:

eukaryotic translation initiation factor 3 subunit K

RGD ID:

18918561

Description:

ENCODES a protein that exhibits ribosome binding (inferred); RNA binding (inferred); translation initiation factor activity (inferred); INVOLVED IN cytoplasmic translational initiation (inferred); formation of cytoplasmic translation initiation complex (inferred); regulation of translational initiation (inferred); PARTICIPATES IN translation initiation pathway; FOUND IN cytoplasm (inferred); cytosol (inferred); eukaryotic 43S preinitiation complex (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	12,025,591 - 12,035,972 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624794	12,025,545 - 12,035,893 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Eif3k	Naked Mole-Rat	cytoplasmic translational initiation	involved_in	IEA	UniRule:UR000107107	150520179		UniProt	GO_REF:0000104
Eif3k	Naked Mole-Rat	formation of cytoplasmic translation initiation complex	involved_in	IEA	UniRule:UR000107107	150520179		UniProt	GO_REF:0000104
Eif3k	Naked Mole-Rat	regulation of translational initiation	involved_in	IEA	InterPro:IPR016020	150520179		InterPro	GO_REF:0000002
Eif3k	Naked Mole-Rat	translation	involved_in	IEA	UniProtKB-KW:KW-0648	150520179		UniProt	GO_REF:0000043
Eif3k	Naked Mole-Rat	translational initiation	involved_in	IEA	UniProtKB-KW:KW-0396	150520179		UniProt	GO_REF:0000043
Eif3k	Naked Mole-Rat	translational initiation	involved_in	IEA	UniProtKB:Q9DBZ5 more ...	150520179		Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Eif3k	Naked Mole-Rat	cytoplasm	located_in	IEA	InterPro:IPR009374	150520179		InterPro	GO_REF:0000002
Eif3k	Naked Mole-Rat	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	150520179		UniProt	GO_REF:0000043
Eif3k	Naked Mole-Rat	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	150520179		UniProt	GO_REF:0000044
Eif3k	Naked Mole-Rat	cytoplasm	located_in	IEA	UniRule:UR000107107	150520179		UniProt	GO_REF:0000104
Eif3k	Naked Mole-Rat	cytosol	located_in	IEA	UniProtKB:Q9UBQ5 and ensembl:ENSP00000248342	150520179		Ensembl	GO_REF:0000107
Eif3k	Naked Mole-Rat	eukaryotic 43S preinitiation complex	part_of	IEA	UniRule:UR000107107	150520179		UniProt	GO_REF:0000104
Eif3k	Naked Mole-Rat	eukaryotic 48S preinitiation complex	part_of	IEA	UniRule:UR000107107	150520179		UniProt	GO_REF:0000104
Eif3k	Naked Mole-Rat	eukaryotic translation initiation factor 3 complex	part_of	IEA	PANTHER:PTN000314732	150520179		TreeGrafter	GO_REF:0000118
Eif3k	Naked Mole-Rat	eukaryotic translation initiation factor 3 complex	part_of	IEA	UniProtKB:Q9DBZ5 more ...	150520179		Ensembl	GO_REF:0000107
Eif3k	Naked Mole-Rat	eukaryotic translation initiation factor 3 complex	part_of	IEA	UniRule:UR000107107	150520179		UniProt	GO_REF:0000104
Eif3k	Naked Mole-Rat	eukaryotic translation initiation factor 3 complex	part_of	IEA	InterPro:IPR009374 and InterPro:IPR016020	150520179		InterPro	GO_REF:0000002
Eif3k	Naked Mole-Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	150520179		UniProt	GO_REF:0000044
Eif3k	Naked Mole-Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Eif3k	Naked Mole-Rat	protein binding	enables	ISO	UniProtKB:P60228 and UniProtKB:Q9Y262	9068941	PMID:19748344 more ...	IntAct	PMID:19748344 more ...
Eif3k	Naked Mole-Rat	protein binding	enables	ISO	UniProtKB:Q9Y262	9068941	PMID:16189514 more ...	IntAct	PMID:16189514 more ...
Eif3k	Naked Mole-Rat	protein binding	enables	ISO	UniProtKB:O14645	9068941	PMID:27173435	IntAct	PMID:27173435
Eif3k	Naked Mole-Rat	protein binding	enables	ISO	UniProtKB:O14645 and UniProtKB:O14901	9068941	PMID:32814053	IntAct	PMID:32814053
Eif3k	Naked Mole-Rat	protein binding	enables	ISO	UniProtKB:P55884	9068941	PMID:18628297	IntAct	PMID:18628297
Eif3k	Naked Mole-Rat	protein binding	enables	ISO	UniProtKB:Q9Q2G4	9068941	PMID:22190034	IntAct	PMID:22190034
Eif3k	Naked Mole-Rat	protein binding	enables	ISO	UniProtKB:P55884 more ...	9068941	PMID:18599441 and PMID:35271311	IntAct	PMID:18599441 and PMID:35271311
Eif3k	Naked Mole-Rat	ribosome binding	enables	IEA	InterPro:IPR016020	150520179		InterPro	GO_REF:0000002
Eif3k	Naked Mole-Rat	RNA binding	enables	IEA	UniRule:UR000107107	150520179		UniProt	GO_REF:0000104
Eif3k	Naked Mole-Rat	translation initiation factor activity	enables	IEA	PANTHER:PTN000314732	150520179		TreeGrafter	GO_REF:0000118
Eif3k	Naked Mole-Rat	translation initiation factor activity	enables	IEA	UniRule:UR000107107	150520179		UniProt	GO_REF:0000104
Eif3k	Naked Mole-Rat	translation initiation factor activity	enables	IEA	UniProtKB-KW:KW-0396	150520179		UniProt	GO_REF:0000043
Eif3k	Naked Mole-Rat	translation initiation factor activity	enables	IEA	InterPro:IPR009374 and InterPro:IPR016020	150520179		InterPro	GO_REF:0000002
Eif3k	Naked Mole-Rat	translation initiation factor activity	contributes_to	IEA	UniProtKB:Q9DBZ5 more ...	150520179		Ensembl	GO_REF:0000107

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Eif3k	Naked Mole-Rat	translation initiation pathway		ISO	EIF3K (Homo sapiens)	9068941		RGD	PMID:24499181 and REF_RGD_ID:10002776

PMID:21993625	PMID:22301074	PMID:30032202

Eif3k
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	12,025,591 - 12,035,972 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624794	12,025,545 - 12,035,893 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

EIF3K
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	38,619,188 - 38,636,954 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	38,619,082 - 38,636,955 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	39,109,828 - 39,127,594 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	43,801,562 - 43,819,435 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	43,801,576 - 43,819,433	NCBI
Celera	19	35,911,748 - 35,929,621 (+)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	35,556,294 - 35,574,163 (+)	NCBI		HuRef
CHM1_1	19	39,110,545 - 39,128,418 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	41,423,166 - 41,440,932 (+)	NCBI		T2T-CHM13v2.0

Eif3k
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	28,670,797 - 28,681,322 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	28,670,797 - 28,681,289 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	28,971,372 - 28,981,890 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	28,971,372 - 28,981,864 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	29,756,392 - 29,766,833 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	28,680,133 - 28,690,574 (-)	NCBI		MGSCv36	mm8
Celera	7	23,532,815 - 23,543,259 (-)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI
cM Map	7	16.94	NCBI

Eif3k
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	93,387,628 - 93,397,551 (-)	NCBI		GRCr8
mRatBN7.2	1	84,260,127 - 84,270,051 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	84,259,673 - 84,270,302 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	89,669,952 - 89,679,797 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	98,129,768 - 98,139,619 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	91,425,809 - 91,435,654 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	87,927,142 - 87,937,033 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	87,927,141 - 87,937,516 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	89,103,168 - 89,113,069 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	84,083,646 - 84,088,799 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	84,161,357 - 84,171,636 (-)	NCBI
Celera	1	78,650,207 - 78,655,360 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Eif3k
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	848,406 - 858,239 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	849,149 - 858,239 (-)	NCBI	ChiLan1.0	ChiLan1.0

EIF3K
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	44,911,980 - 44,929,143 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	46,782,164 - 46,799,467 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	35,714,791 - 35,732,049 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	44,286,262 - 44,303,608 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	44,286,262 - 44,303,608 (+)	Ensembl	panpan1.1		panPan2

EIF3K
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	114,433,373 - 114,443,911 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	114,433,375 - 114,443,902 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	113,838,008 - 113,848,550 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	115,035,289 - 115,045,857 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	115,035,291 - 115,045,846 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	114,608,270 - 114,618,832 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	114,226,014 - 114,236,551 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	115,264,552 - 115,275,118 (-)	NCBI		UU_Cfam_GSD_1.0

Eif3k
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	13,150,200 - 13,161,570 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936801	1,315,509 - 1,330,242 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936801	1,315,530 - 1,326,926 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EIF3K
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	6	47,476,184 - 47,488,933 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	43,027,843 - 43,040,551 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EIF3K
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	33,263,091 - 33,281,170 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	33,263,098 - 33,281,517 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	11,211,361 - 11,229,238 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_004859056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AHKG01067223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AHKG01067224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GEBF01007446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JH165993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSHGLT00000008953 ⟹ ENSHGLP00000008858

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624794	12,025,591 - 12,035,972 (+)	Ensembl

Ensembl Acc Id:

ENSHGLT00000008954 ⟹ ENSHGLP00000008859

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624794	12,025,686 - 12,035,860 (+)	Ensembl

Ensembl Acc Id:

ENSHGLT00000008955 ⟹ ENSHGLP00000008860

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624794	12,025,686 - 12,035,244 (+)	Ensembl

RefSeq Acc Id:

XM_004859056 ⟹ XP_004859113

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624794	12,025,545 - 12,035,893 (+)	NCBI


Protein RefSeqs	XP_004859113	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EHA98171	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSHGLP00000008858
	ENSHGLP00000040432
GenBank Protein	JAN96186	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_004859113 ⟸ XM_004859056
- UniProtKB:	A0A0P6J1Z2 (UniProtKB/TrEMBL), G5AMB1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSHGLP00000008858 ⟸ ENSHGLT00000008953

Ensembl Acc Id:

ENSHGLP00000008859 ⟸ ENSHGLT00000008954

Ensembl Acc Id:

ENSHGLP00000008860 ⟸ ENSHGLT00000008955

Database	Acc Id	Source(s)
Ensembl Genes	ENSHGLG00000006367	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSHGLT00000008953	ENTREZGENE
	ENSHGLT00000045541	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
	ARM repeat, domain 1	UniProtKB/TrEMBL
InterPro	ARM-type_fold	UniProtKB/TrEMBL
	CSN8_PSD8_EIF3K	UniProtKB/TrEMBL
	eIF3k	UniProtKB/TrEMBL
	PCI_dom	UniProtKB/TrEMBL
	Transl_init_fac_sub12_N_euk	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
KEGG Report	hgl:101709919	UniProtKB/TrEMBL
NCBI Gene	Eif3k	ENTREZGENE
PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT K	UniProtKB/TrEMBL
	PTHR13022	UniProtKB/TrEMBL
Pfam	CSN8_PSD8_EIF3K	UniProtKB/TrEMBL
PROSITE	PCI	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
	SSF48371	UniProtKB/TrEMBL
UniProt	A0A0P6J1Z2	ENTREZGENE, UniProtKB/TrEMBL
	G5AMB1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message

RGD Manual Annotations