Slc6a21 (solute carrier family 6 member 21) - Rat Genome Database

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Gene: Slc6a21 (solute carrier family 6 member 21) Rattus norvegicus
Analyze
Symbol: Slc6a21
Name: solute carrier family 6 member 21
RGD ID: 1562492
Description: Predicted to enable symporter activity. Predicted to be involved in amino acid transport and sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane; INTERACTS WITH C60 fullerene; cadmium dichloride; copper atom.
Type: protein-coding
RefSeq Status: PREDICTED
Previously known as: hypothetical protein LOC499151; LOC499151; MGC189204; RGD1562492; similar to Orphan sodium- and chloride-dependent neurotransmitter transporter NTT5 (Solute carrier family 6 member 16); uncharacterized protein LOC499151
RGD Orthologs
Human
Mouse
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,890,692 - 104,902,318 (+)NCBIGRCr8
mRatBN7.2195,754,257 - 95,765,854 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,754,447 - 95,765,851 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1101,142,189 - 101,151,068 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,614,861 - 109,623,741 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,905,259 - 102,914,138 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,264,495 - 101,277,220 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,265,272 - 101,277,204 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,329,304 - 102,340,924 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,747,402 - 95,756,279 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera190,014,500 - 90,023,377 (+)NCBICelera
Cytogenetic Map1q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Slc6a21
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,890,692 - 104,902,318 (+)NCBIGRCr8
mRatBN7.2195,754,257 - 95,765,854 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,754,447 - 95,765,851 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1101,142,189 - 101,151,068 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,614,861 - 109,623,741 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,905,259 - 102,914,138 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,264,495 - 101,277,220 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,265,272 - 101,277,204 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,329,304 - 102,340,924 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,747,402 - 95,756,279 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera190,014,500 - 90,023,377 (+)NCBICelera
Cytogenetic Map1q22NCBI
SLC6A21P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,252,333 - 49,256,340 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,255,472 - 49,256,102 (-)EnsemblGRCh38hg38GRCh38
GRCh371949,755,590 - 49,759,597 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1946,622,473 - 46,626,480 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,132,607 - 46,136,614 (-)NCBIHuRef
CHM1_11949,757,049 - 49,761,056 (-)NCBICHM1_1
T2T-CHM13v2.01952,249,691 - 52,253,698 (-)NCBIT2T-CHM13v2.0
Slc6a21
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,926,755 - 44,938,420 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,926,937 - 44,938,422 (+)EnsemblGRCm39 Ensembl
GRCm38745,277,331 - 45,288,996 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,277,513 - 45,288,998 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,538,243 - 52,544,363 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36745,150,915 - 45,157,035 (+)NCBIMGSCv36mm8
Celera740,738,785 - 40,744,905 (+)ENTREZGENECelera
Cytogenetic Map7B3NCBI
cM Map729.23NCBI

Variants

.
Variants in Slc6a21
11 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:65
Interacting mature miRNAs:67
Transcripts:ENSRNOT00000051280
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)185424647100358001Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)190532338123479925Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)190664883143200202Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192184926137184926Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)192948896144267916Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)194494440117601394Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7 1
Low 1 11 24 7 10
Below cutoff 2 2 8 8 2 2 14 11 16 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005490545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005490548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC095435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC168918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000051280   ⟹   ENSRNOP00000048128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl195,754,447 - 95,765,851 (+)Ensembl
Rnor_6.0 Ensembl1101,265,272 - 101,277,204 (+)Ensembl
RefSeq Acc Id: NM_001109146   ⟹   NP_001102616
RefSeq Status: PREDICTED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,893,235 - 104,902,112 (+)NCBI
mRatBN7.2195,756,766 - 95,765,646 (+)NCBI
Rnor_6.01101,268,082 - 101,276,959 (+)NCBI
Rnor_5.01102,329,304 - 102,340,924 (+)NCBI
RGSC_v3.4195,747,402 - 95,756,279 (+)RGD
Celera190,014,500 - 90,023,377 (+)RGD
Sequence:
RefSeq Acc Id: XM_006229119   ⟹   XP_006229181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,729 - 104,902,318 (+)NCBI
mRatBN7.2195,754,258 - 95,765,852 (+)NCBI
Rnor_6.01101,264,495 - 101,277,220 (+)NCBI
Rnor_5.01102,329,304 - 102,340,924 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039087435   ⟹   XP_038943363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,692 - 104,902,318 (+)NCBI
mRatBN7.2195,754,258 - 95,765,852 (+)NCBI
RefSeq Acc Id: XM_039087439   ⟹   XP_038943367
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,728 - 104,902,318 (+)NCBI
mRatBN7.2195,754,257 - 95,765,852 (+)NCBI
RefSeq Acc Id: XM_039087446   ⟹   XP_038943374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,729 - 104,902,318 (+)NCBI
mRatBN7.2195,754,258 - 95,765,852 (+)NCBI
RefSeq Acc Id: XM_039087448   ⟹   XP_038943376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,697 - 104,902,318 (+)NCBI
mRatBN7.2195,754,257 - 95,765,852 (+)NCBI
RefSeq Acc Id: XM_039087452   ⟹   XP_038943380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,729 - 104,902,318 (+)NCBI
mRatBN7.2195,754,258 - 95,765,852 (+)NCBI
RefSeq Acc Id: XM_039087457   ⟹   XP_038943385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,727 - 104,902,318 (+)NCBI
mRatBN7.2195,754,257 - 95,765,854 (+)NCBI
RefSeq Acc Id: XM_039087466   ⟹   XP_038943394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,728 - 104,902,318 (+)NCBI
mRatBN7.2195,754,258 - 95,765,852 (+)NCBI
RefSeq Acc Id: XM_039087480   ⟹   XP_038943408
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,731 - 104,900,602 (+)NCBI
mRatBN7.2195,754,259 - 95,764,136 (+)NCBI
RefSeq Acc Id: XM_063270984   ⟹   XP_063127054
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,692 - 104,902,318 (+)NCBI
RefSeq Acc Id: XM_063270989   ⟹   XP_063127059
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,692 - 104,902,318 (+)NCBI
RefSeq Acc Id: XM_063270993   ⟹   XP_063127063
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,692 - 104,902,318 (+)NCBI
RefSeq Acc Id: XM_063270999   ⟹   XP_063127069
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,728 - 104,902,318 (+)NCBI
RefSeq Acc Id: XM_063271007   ⟹   XP_063127077
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,727 - 104,902,318 (+)NCBI
RefSeq Acc Id: XM_063271022   ⟹   XP_063127092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,728 - 104,902,318 (+)NCBI
RefSeq Acc Id: XM_063271023   ⟹   XP_063127093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,727 - 104,902,318 (+)NCBI
RefSeq Acc Id: XM_063271025   ⟹   XP_063127095
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,727 - 104,902,318 (+)NCBI
RefSeq Acc Id: XM_063271026   ⟹   XP_063127096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,692 - 104,902,318 (+)NCBI
RefSeq Acc Id: XM_063271029   ⟹   XP_063127099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,728 - 104,902,318 (+)NCBI
RefSeq Acc Id: XM_063271031   ⟹   XP_063127101
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,714 - 104,902,318 (+)NCBI
RefSeq Acc Id: XM_063271040   ⟹   XP_063127110
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,729 - 104,900,408 (+)NCBI
RefSeq Acc Id: XR_005490545
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,730 - 104,901,593 (+)NCBI
mRatBN7.2195,754,258 - 95,765,218 (+)NCBI
RefSeq Acc Id: XR_005490548
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,890,730 - 104,901,749 (+)NCBI
mRatBN7.2195,754,258 - 95,765,283 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001102616   ⟸   NM_001109146
- UniProtKB: A6JB04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229181   ⟸   XM_006229119
- Peptide Label: isoform X1
- UniProtKB: A6JB04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000048128   ⟸   ENSRNOT00000051280
RefSeq Acc Id: XP_038943385   ⟸   XM_039087457
- Peptide Label: isoform X8
- UniProtKB: F7EU61 (UniProtKB/TrEMBL),   B5DF42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943367   ⟸   XM_039087439
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038943376   ⟸   XM_039087448
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038943374   ⟸   XM_039087446
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038943380   ⟸   XM_039087452
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038943394   ⟸   XM_039087466
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038943363   ⟸   XM_039087435
- Peptide Label: isoform X1
- UniProtKB: A6JB04 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943408   ⟸   XM_039087480
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063127059   ⟸   XM_063270989
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063127054   ⟸   XM_063270984
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063127063   ⟸   XM_063270993
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063127096   ⟸   XM_063271026
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063127101   ⟸   XM_063271031
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063127095   ⟸   XM_063271025
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063127077   ⟸   XM_063271007
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063127093   ⟸   XM_063271023
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063127069   ⟸   XM_063270999
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063127099   ⟸   XM_063271029
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063127092   ⟸   XM_063271022
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063127110   ⟸   XM_063271040
- Peptide Label: isoform X14

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F7EU61-F1-model_v2 AlphaFold F7EU61 1-709 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562492 AgrOrtholog
BioCyc Gene G2FUF-59696 BioCyc
Ensembl Genes ENSRNOG00000037219 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000051280.6 UniProtKB/TrEMBL
InterPro Na/ntran_symport UniProtKB/TrEMBL
  SNS_sf UniProtKB/TrEMBL
KEGG Report rno:499151 UniProtKB/TrEMBL
NCBI Gene 499151 ENTREZGENE
PANTHER Na/ntran_symport UniProtKB/TrEMBL
  TRANSPORTER UniProtKB/TrEMBL
Pfam SNF UniProtKB/TrEMBL
PhenoGen Slc6a21 PhenoGen
PRINTS NANEUSMPORT UniProtKB/TrEMBL
PROSITE NA_NEUROTRAN_SYMP_1 UniProtKB/TrEMBL
  NA_NEUROTRAN_SYMP_3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000037219 RatGTEx
Superfamily-SCOP SSF161070 UniProtKB/TrEMBL
UniProt A6JB04 ENTREZGENE, UniProtKB/TrEMBL
  B5DF42 ENTREZGENE, UniProtKB/TrEMBL
  F7EU61 ENTREZGENE
UniProt Secondary F7EU61 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-10-20 Slc6a21  solute carrier family 6 member 21  RGD1562492  similar to Orphan sodium- and chloride-dependent neurotransmitter transporter NTT5 (Solute carrier family 6 member 16)  Name and Symbol changed 629549 APPROVED
2008-04-30 RGD1562492  similar to Orphan sodium- and chloride-dependent neurotransmitter transporter NTT5 (Solute carrier family 6 member 16)   RGD1562492_predicted  similar to Orphan sodium- and chloride-dependent neurotransmitter transporter NTT5 (Solute carrier family 6 member 16) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-10 RGD1562492_predicted  similar to Orphan sodium- and chloride-dependent neurotransmitter transporter NTT5 (Solute carrier family 6 member 16) (predicted)      Name updated 1299863 APPROVED
2006-03-07 RGD1562492_predicted  similar to Orphan sodium- and chloride-dependent neurotransmitter transporter NTT5 (Solute carrier family 6 member 16) (predicted)  LOC499151  similar to Orphan sodium- and chloride-dependent neurotransmitter transporter NTT5 (Solute carrier family 6 member 16)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499151  similar to Orphan sodium- and chloride-dependent neurotransmitter transporter NTT5 (Solute carrier family 6 member 16)      Symbol and Name status set to provisional 70820 PROVISIONAL