Ppp1r13l (protein phosphatase 1, regulatory subunit 13 like) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ppp1r13l (protein phosphatase 1, regulatory subunit 13 like) Rattus norvegicus
Analyze
Symbol: Ppp1r13l
Name: protein phosphatase 1, regulatory subunit 13 like
RGD ID: 1593681
Description: Predicted to enable identical protein binding activity. Involved in positive regulation of cell differentiation. Predicted to be located in cell junction; cytosol; and intercellular bridge. Orthologous to human PPP1R13L (protein phosphatase 1 regulatory subunit 13 like); PARTICIPATES IN p53 signaling pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; aconitine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC686781; relA-associated inhibitor; similar to NFkB interacting protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,139,000 - 88,158,714 (+)NCBIGRCr8
mRatBN7.2179,010,997 - 79,030,714 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,011,745 - 79,030,712 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0180,271,288 - 80,290,946 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,279,706 - 80,290,408 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,537,577 - 81,557,255 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4178,727,071 - 78,896,831 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera173,473,041 - 73,492,645 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell junction  (IEA,ISO)
cytosol  (IEA,ISO)
intercellular bridge  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transcriptional regulation by p53. Beckerman R and Prives C, Cold Spring Harb Perspect Biol. 2010 Aug;2(8):a000935. doi: 10.1101/cshperspect.a000935. Epub 2010 Apr 28.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Involvement of RelA-associated inhibitor in regulation of trophoblast differentiation via interaction with transcriptional factor specificity protein-1. Minekawa R, etal., Endocrinology. 2007 Dec;148(12):5803-10. Epub 2007 Sep 13.
4. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:15661756   PMID:18275817   PMID:23623661   PMID:25468996  


Genomics

Comparative Map Data
Ppp1r13l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,139,000 - 88,158,714 (+)NCBIGRCr8
mRatBN7.2179,010,997 - 79,030,714 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,011,745 - 79,030,712 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0180,271,288 - 80,290,946 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,279,706 - 80,290,408 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,537,577 - 81,557,255 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4178,727,071 - 78,896,831 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera173,473,041 - 73,492,645 (+)NCBICelera
Cytogenetic Map1q21NCBI
PPP1R13L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381945,379,638 - 45,406,361 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1945,379,638 - 45,406,349 (-)EnsemblGRCh38hg38GRCh38
GRCh371945,882,896 - 45,909,619 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361950,574,736 - 50,600,129 (-)NCBINCBI36Build 36hg18NCBI36
Build 341950,574,735 - 50,588,265NCBI
Celera1942,688,993 - 42,715,713 (-)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1942,315,788 - 42,339,935 (-)NCBIHuRef
CHM1_11945,886,191 - 45,912,899 (-)NCBICHM1_1
T2T-CHM13v2.01948,206,875 - 48,234,343 (-)NCBIT2T-CHM13v2.0
Ppp1r13l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39719,093,639 - 19,112,465 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl719,093,674 - 19,112,458 (+)EnsemblGRCm39 Ensembl
GRCm38719,359,724 - 19,378,540 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,359,749 - 19,378,533 (+)EnsemblGRCm38mm10GRCm38
MGSCv37719,946,565 - 19,963,882 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36718,519,768 - 18,536,530 (+)NCBIMGSCv36mm8
Celera716,767,970 - 16,785,307 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.62NCBI
Ppp1r13l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555552,372,259 - 2,389,626 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555552,373,088 - 2,390,973 (-)NCBIChiLan1.0ChiLan1.0
PPP1R13L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22051,540,765 - 51,567,201 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11953,408,236 - 53,438,745 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01942,328,814 - 42,355,088 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11950,915,901 - 50,950,837 (-)NCBIpanpan1.1PanPan1.1panPan2
PPP1R13L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11110,149,393 - 110,166,029 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1110,156,749 - 110,165,915 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1109,633,886 - 109,650,563 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01110,682,231 - 110,698,908 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1110,682,994 - 110,698,895 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,357,858 - 110,374,530 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01109,992,017 - 110,008,687 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01110,861,328 - 110,878,230 (+)NCBIUU_Cfam_GSD_1.0
Ppp1r13l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,488,020 - 17,504,030 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367061,837,001 - 1,846,494 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367061,835,306 - 1,846,821 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP1R13L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl651,763,227 - 51,781,058 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1651,763,214 - 51,779,902 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PPP1R13L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1638,828,564 - 38,853,760 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607318,432,658 - 18,457,840 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp1r13l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249072,269,815 - 2,286,184 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249072,269,341 - 2,285,909 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ppp1r13l
110 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:62
Interacting mature miRNAs:63
Transcripts:ENSRNOT00000047105
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)17843075491209302Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat

Markers in Region
D1Rat177  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,054,642 - 79,054,836 (+)MAPPERmRatBN7.2
Rnor_6.0180,314,765 - 80,314,958NCBIRnor6.0
Rnor_5.0181,581,037 - 81,581,230UniSTSRnor5.0
RGSC_v3.4178,755,354 - 78,755,548RGDRGSC3.4
RGSC_v3.4178,755,355 - 78,755,548UniSTSRGSC3.4
RGSC_v3.1178,833,466 - 78,833,659RGD
Celera173,516,569 - 73,516,762UniSTS
RH 3.4 Map1787.8UniSTS
RH 3.4 Map1787.8RGD
SHRSP x BN Map140.2499UniSTS
SHRSP x BN Map140.2499RGD
Cytogenetic Map1q21UniSTS
D1Got80  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,161,513 - 79,161,692 (+)MAPPERmRatBN7.2
Rnor_6.0180,420,441 - 80,420,619NCBIRnor6.0
Rnor_5.0181,686,462 - 81,686,640UniSTSRnor5.0
RGSC_v3.4178,865,133 - 78,865,311RGDRGSC3.4
RGSC_v3.4178,865,134 - 78,865,312UniSTSRGSC3.4
RGSC_v3.1178,943,244 - 78,943,422RGD
Celera173,621,099 - 73,621,277UniSTS
RH 3.4 Map1787.4UniSTS
RH 3.4 Map1787.4RGD
RH 2.0 Map1498.9RGD
Cytogenetic Map1q21UniSTS
D1Got81  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,110,512 - 79,110,777 (+)MAPPERmRatBN7.2
Rnor_6.0180,369,283 - 80,369,547NCBIRnor6.0
Rnor_5.0181,635,555 - 81,635,819UniSTSRnor5.0
RGSC_v3.4178,811,154 - 78,811,419RGDRGSC3.4
RGSC_v3.4178,811,155 - 78,811,419UniSTSRGSC3.4
RGSC_v3.1178,889,265 - 78,889,530RGD
Celera173,570,104 - 73,570,368UniSTS
RH 2.0 Map1512.9RGD
BF400777  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,171,901 - 79,172,016 (+)MAPPERmRatBN7.2
Rnor_6.0180,430,829 - 80,430,943NCBIRnor6.0
Rnor_5.0181,696,850 - 81,696,964UniSTSRnor5.0
RGSC_v3.4178,875,522 - 78,875,636UniSTSRGSC3.4
Celera173,631,485 - 73,631,599UniSTS
RH 3.4 Map4593.9UniSTS
Cytogenetic Map1q21UniSTS
PMC125755P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,064,827 - 79,065,021 (+)MAPPERmRatBN7.2
Rnor_6.0180,324,950 - 80,325,143NCBIRnor6.0
Rnor_5.0181,591,222 - 81,591,415UniSTSRnor5.0
RGSC_v3.4178,765,540 - 78,765,733UniSTSRGSC3.4
Celera173,526,734 - 73,526,927UniSTS
Cytogenetic Map1q21UniSTS
RH129012  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,143,977 - 79,144,158 (+)MAPPERmRatBN7.2
Rnor_6.0180,402,894 - 80,403,074NCBIRnor6.0
Rnor_5.0181,669,051 - 81,669,231UniSTSRnor5.0
RGSC_v3.4178,846,861 - 78,847,041UniSTSRGSC3.4
Celera173,603,657 - 73,603,837UniSTS
RH 3.4 Map1819.1UniSTS
RH134037  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,030,471 - 79,030,658 (+)MAPPERmRatBN7.2
Rnor_6.0180,290,704 - 80,290,890NCBIRnor6.0
Rnor_5.0181,557,013 - 81,557,199UniSTSRnor5.0
RGSC_v3.4178,896,589 - 78,896,775UniSTSRGSC3.4
Celera173,492,403 - 73,492,589UniSTS
RH142672  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,156,035 - 79,156,157 (+)MAPPERmRatBN7.2
Rnor_6.0180,414,963 - 80,415,084NCBIRnor6.0
Rnor_5.0181,680,984 - 81,681,105UniSTSRnor5.0
RGSC_v3.4178,859,656 - 78,859,777UniSTSRGSC3.4
Celera173,615,621 - 73,615,742UniSTS
RH 3.4 Map1818.2UniSTS
Cytogenetic Map1q21UniSTS
RH144210  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,024,294 - 79,024,413 (+)MAPPERmRatBN7.2
Rnor_6.0180,284,529 - 80,284,647NCBIRnor6.0
Rnor_5.0181,550,838 - 81,550,956UniSTSRnor5.0
RGSC_v3.4178,890,413 - 78,890,531UniSTSRGSC3.4
Celera173,486,255 - 73,486,373UniSTS
RH 3.4 Map1819.5UniSTS
D1Bda2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,071,431 - 79,071,698 (+)MAPPERmRatBN7.2
Rnor_6.0180,331,552 - 80,331,818NCBIRnor6.0
Rnor_5.0181,597,824 - 81,598,090UniSTSRnor5.0
RGSC_v3.4178,772,393 - 78,772,659UniSTSRGSC3.4
Celera173,533,692 - 73,533,958UniSTS
Cytogenetic Map1q21UniSTS
BE107128  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,180,875 - 79,181,012 (-)MAPPERmRatBN7.2
mRatBN7.2179,180,875 - 79,181,012 (+)MAPPERmRatBN7.2
mRatBN7.2149,826,424 - 49,826,561 (-)MAPPERmRatBN7.2
mRatBN7.2149,826,424 - 49,826,561 (+)MAPPERmRatBN7.2
Rnor_6.0150,014,365 - 50,014,501NCBIRnor6.0
Rnor_6.0180,439,800 - 80,439,936NCBIRnor6.0
Rnor_5.0149,739,855 - 49,739,991UniSTSRnor5.0
Rnor_5.0181,705,821 - 81,705,957UniSTSRnor5.0
RGSC_v3.4178,884,493 - 78,884,629UniSTSRGSC3.4
RGSC_v3.4144,315,802 - 44,315,938UniSTSRGSC3.4
Celera145,610,880 - 45,611,016UniSTS
Celera173,640,456 - 73,640,592UniSTS
RH 3.4 Map1589.6UniSTS
Cytogenetic Map1q11UniSTS
Cytogenetic Map1q21UniSTS
RH94390  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,071,612 - 79,071,710 (+)MAPPERmRatBN7.2
Rnor_6.0180,331,733 - 80,331,830NCBIRnor6.0
Rnor_5.0181,598,005 - 81,598,102UniSTSRnor5.0
RGSC_v3.4178,772,574 - 78,772,671UniSTSRGSC3.4
Celera173,533,873 - 73,533,970UniSTS
RH 3.4 Map1787.5UniSTS
Cytogenetic Map5q36UniSTS
Cytogenetic Map1q21UniSTS
RH138712  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,071,461 - 79,071,600 (+)MAPPERmRatBN7.2
Rnor_6.0180,331,582 - 80,331,720NCBIRnor6.0
Rnor_5.0181,597,854 - 81,597,992UniSTSRnor5.0
RGSC_v3.4178,772,423 - 78,772,561UniSTSRGSC3.4
Celera173,533,722 - 73,533,860UniSTS
RH 3.4 Map1819.7UniSTS
Cytogenetic Map1q21UniSTS
RH138979  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,124,440 - 79,124,637 (+)MAPPERmRatBN7.2
Rnor_6.0180,383,214 - 80,383,410NCBIRnor6.0
Rnor_5.0181,649,371 - 81,649,567UniSTSRnor5.0
RGSC_v3.4178,826,000 - 78,826,196UniSTSRGSC3.4
Celera173,584,120 - 73,584,316UniSTS
RH 3.4 Map1820.2UniSTS
Ckmm  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,064,837 - 79,066,141 (+)MAPPERmRatBN7.2
Rnor_6.0180,324,960 - 80,326,263NCBIRnor6.0
Rnor_5.0181,591,232 - 81,592,535UniSTSRnor5.0
RGSC_v3.4178,765,550 - 78,766,853UniSTSRGSC3.4
Celera173,526,744 - 73,528,047UniSTS
Cytogenetic Map1q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 35 7 1
Low 3 8 43 33 9 33 3 68 33 32 10
Below cutoff 13 7 10 7 8 8 6 2 2 8

Sequence


RefSeq Acc Id: ENSRNOT00000047105   ⟹   ENSRNOP00000050977
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,011,745 - 79,030,712 (+)Ensembl
Rnor_6.0 Ensembl180,279,706 - 80,290,408 (+)Ensembl
RefSeq Acc Id: NM_001427130   ⟹   NP_001414059
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,140,532 - 88,158,714 (+)NCBI
RefSeq Acc Id: XM_006228495   ⟹   XP_006228557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,139,289 - 88,158,714 (+)NCBI
mRatBN7.2179,012,646 - 79,030,714 (+)NCBI
Rnor_6.0180,271,288 - 80,290,946 (+)NCBI
Rnor_5.0181,537,577 - 81,557,255 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063274155   ⟹   XP_063130225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,139,264 - 88,158,714 (+)NCBI
RefSeq Acc Id: XM_063274161   ⟹   XP_063130231
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,139,000 - 88,158,714 (+)NCBI
RefSeq Acc Id: XM_063274166   ⟹   XP_063130236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,139,264 - 88,158,714 (+)NCBI
RefSeq Acc Id: XM_063274170   ⟹   XP_063130240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,139,267 - 88,158,714 (+)NCBI
RefSeq Acc Id: XP_006228557   ⟸   XM_006228495
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000050977   ⟸   ENSRNOT00000047105
RefSeq Acc Id: XP_063130231   ⟸   XM_063274161
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063130225   ⟸   XM_063274155
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063130236   ⟸   XM_063274166
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063130240   ⟸   XM_063274170
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001414059   ⟸   NM_001427130
- UniProtKB: F1LW07 (UniProtKB/TrEMBL)
Protein Domains
SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LW07-F1-model_v2 AlphaFold F1LW07 1-825 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593681 AgrOrtholog
BioCyc Gene G2FUF-60509 BioCyc
Ensembl Genes ENSRNOG00000025350 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047105.5 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  iASPP UniProtKB/TrEMBL
  SH3-like_dom UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  SH3_iASPP UniProtKB/TrEMBL
NCBI Gene 686781 ENTREZGENE
PANTHER PTHR24164 UniProtKB/TrEMBL
  RELA-ASSOCIATED INHIBITOR UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  SH3_9 UniProtKB/TrEMBL
PhenoGen Ppp1r13l PhenoGen
PRINTS SH3DOMAIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000025350 RatGTEx
SMART ANK UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
UniProt F1LW07 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-02 Ppp1r13l  protein phosphatase 1, regulatory subunit 13 like  LOC686781  similar to NFkB interacting protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC686781  similar to NFkB interacting protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL