Mir330 (microRNA 330) - Rat Genome Database

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Gene: Mir330 (microRNA 330) Rattus norvegicus
Analyze
Symbol: Mir330
Name: microRNA 330
RGD ID: 2325620
Description: Predicted to act upstream of or within several processes, including cellular response to forskolin; juxtaglomerular apparatus development; and long-term synaptic potentiation. Orthologous to human MIR330 (microRNA 330); INTERACTS WITH 2,5-hexanedione; atrazine; bleomycin A2.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA mir-330; rno-mir-330
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8187,961,207 - 87,961,303 (+)NCBIGRCr8
mRatBN7.2178,833,178 - 78,833,274 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,833,178 - 78,833,274 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx184,222,262 - 84,222,358 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0192,779,863 - 92,779,959 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0185,977,353 - 85,977,449 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0180,092,681 - 80,092,777 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,092,681 - 80,092,777 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,358,760 - 81,358,856 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera173,298,803 - 73,298,899 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mir330RatAcute Lung Injury  IEP 11553933associated with Disseminated Intravascular Coagulation and RNA:increased expression:lung:RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mir330RatMyocardial Reperfusion Injury  ISOMIR330 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:22050707

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mir330Rat1,3,5-trinitro-1,3,5-triazinane decreases expressionISOMir330 (Mus musculus)6480464cyclonite results in decreased expression of MIR330 mRNA modified formCTDPMID:19270793
Mir330Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine decreases expressionISOMir330 (Mus musculus)64804641-Methyl-4-phenyl-1 more ...CTDPMID:29071302
Mir330Rat17beta-estradiol decreases expressionISOMIR330 (Homo sapiens)6480464Estradiol results in decreased expression of MIR330 mRNACTDPMID:24877718
Mir330Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOMIR330 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of MIR330 mRNACTDPMID:30096437
Mir330Rat2,5-hexanedione increases expressionEXP 64804642 and 5-hexanedione results in increased expression of MIR330 mRNACTDPMID:31760062
Mir330Ratatrazine decreases expressionEXP 6480464Atrazine results in decreased expression of MIR330 mRNACTDPMID:31185338
Mir330Ratbenzo[a]pyrene increases methylationISOMIR330 (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of MIR330 promoterCTDPMID:27901495
Mir330Ratbis(2-ethylhexyl) phthalate decreases expressionISOMir330 (Mus musculus)6480464Diethylhexyl Phthalate results in decreased expression of MIR330 mRNACTDPMID:32105654
Mir330Ratbleomycin A2 decreases expressionEXP 6480464Bleomycin results in decreased expression of MIR330 mRNACTDPMID:25933445
Mir330Ratcadmium atom multiple interactionsISOMir330 (Mus musculus)6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of MIR330 mRNACTDPMID:28892167
Mir330Ratcadmium dichloride multiple interactionsISOMir330 (Mus musculus)6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of MIR330 mRNACTDPMID:28892167
Mir330Ratdexmedetomidine multiple interactionsEXP 6480464Dexmedetomidine affects the reaction [MIR330 protein affects the expression of HSPD1 mRNA] more ...CTDPMID:34590382
Mir330Ratformaldehyde decreases expressionISOMIR330 (Homo sapiens)6480464Formaldehyde results in decreased expression of MIR330 mRNACTDPMID:21147603
Mir330Rathydrogen peroxide increases expressionISOMIR330 (Homo sapiens)6480464Hydrogen Peroxide results in increased expression of MIR330 mRNACTDPMID:26339600
Mir330Ratlead diacetate increases expressionISOMir330 (Mus musculus)6480464lead acetate results in increased expression of MIR330 mRNACTDPMID:36183778
Mir330Ratnitrofen increases expressionEXP 6480464nitrofen results in increased expression of MIR330 mRNACTDPMID:26720608
Mir330Ratparacetamol decreases expressionEXP 6480464Acetaminophen results in decreased expression of MIR330 mRNACTDPMID:22112502
Mir330Ratparacetamol increases expressionEXP 6480464Acetaminophen results in increased expression of MIR330 mRNACTDPMID:22112502
Mir330Ratphenoxymethylpenicillin decreases expressionEXP 6480464Penicillin V results in decreased expression of MIR330 mRNACTDPMID:22112502
Mir330RatPhIP decreases expressionISOMIR330 (Homo sapiens)64804642-amino-1-methyl-6-phenylimidazo(4 and 5-b)pyridine results in decreased expression of MIR330 mRNACTDPMID:24877718

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Biological Process

  


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. miR-96 and miR-330 overexpressed and targeted AQP5 in lipopolysaccharide-induced rat lung damage of disseminated intravascular coagulation. Zhang Y, etal., Blood Coagul Fibrinolysis. 2014 Oct;25(7):731-7. doi: 10.1097/MBC.0000000000000133.
PMID:14691248   PMID:16381832   PMID:17604727   PMID:20403161   PMID:21993888   PMID:25858512   PMID:30015907   PMID:32360974   PMID:33508876   PMID:35451738   PMID:36794530   PMID:37584866  



Mir330
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8187,961,207 - 87,961,303 (+)NCBIGRCr8
mRatBN7.2178,833,178 - 78,833,274 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,833,178 - 78,833,274 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx184,222,262 - 84,222,358 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0192,779,863 - 92,779,959 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0185,977,353 - 85,977,449 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0180,092,681 - 80,092,777 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,092,681 - 80,092,777 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,358,760 - 81,358,856 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera173,298,803 - 73,298,899 (+)NCBICelera
Cytogenetic Map1q21NCBI
MIR330
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381945,638,994 - 45,639,087 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1945,638,994 - 45,639,087 (-)EnsemblGRCh38hg38GRCh38
GRCh371946,142,252 - 46,142,345 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361950,834,091 - 50,834,184 (-)NCBINCBI36Build 36hg18NCBI36
Celera1942,948,362 - 42,948,455 (-)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1942,571,370 - 42,571,463 (-)NCBIHuRef
CHM1_11946,145,522 - 46,145,615 (-)NCBICHM1_1
T2T-CHM13v2.01948,466,260 - 48,466,353 (-)NCBIT2T-CHM13v2.0
Mir330
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39718,915,390 - 18,915,487 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl718,915,390 - 18,915,487 (+)EnsemblGRCm39 Ensembl
GRCm38719,181,465 - 19,181,562 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,181,465 - 19,181,562 (+)EnsemblGRCm38mm10GRCm38
MGSCv37719,766,814 - 19,766,911 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera716,593,315 - 16,593,412 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.46NCBI
MIR330
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11109,922,138 - 109,922,226 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1109,922,124 - 109,922,231 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1109,407,206 - 109,407,294 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01110,455,335 - 110,455,423 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11110,130,892 - 110,130,980 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01109,765,521 - 109,765,609 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01110,634,432 - 110,634,520 (+)NCBIUU_Cfam_GSD_1.0

.

Predicted Targets
Summary Value
Count of predictions:17907
Count of gene targets:8907
Count of transcripts:9723
Interacting mature miRNAs:rno-miR-330-3p, rno-miR-330-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


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The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat

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circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
2 37 7 6 3 6 3 14 11 34 12 3


RefSeq Transcripts NR_031777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000053688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl178,833,178 - 78,833,274 (+)Ensembl
Rnor_6.0 Ensembl180,092,681 - 80,092,777 (+)Ensembl
RefSeq Acc Id: NR_031777
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8187,961,207 - 87,961,303 (+)NCBI
mRatBN7.2178,833,178 - 78,833,274 (+)NCBI
Rnor_6.0180,092,681 - 80,092,777 (+)NCBI
Rnor_5.0181,358,760 - 81,358,856 (+)NCBI
Celera173,298,803 - 73,298,899 (+)NCBI
Sequence:

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 10 of 10 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-60523 BioCyc
Ensembl Genes ENSRNOG00000035565 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000053688 ENTREZGENE
miRBase MI0000606 ENTREZGENE
NCBI Gene 100313974 ENTREZGENE
PhenoGen Mir330 PhenoGen
RatGTEx ENSRNOG00000035565 RatGTEx
RNAcentral URS00003380C1 RNACentral
  URS00004CBBFA RNACentral
  URS00006834ED RNACentral
1 to 10 of 10 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-14 Mir330  microRNA 330  Mir330  microRNA mir-330  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-06-02 Mir330  microRNA mir-330      Symbol and Name status set to provisional 70820 PROVISIONAL