Snord35a (small nucleolar RNA, C/D box 35A) - Rat Genome Database

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Gene: Snord35a (small nucleolar RNA, C/D box 35A) Rattus norvegicus
Analyze
Symbol: Snord35a
Name: small nucleolar RNA, C/D box 35A
RGD ID: 41294442
Description: Predicted to act upstream of or within glucose metabolic process; insulin secretion; and reactive oxygen species metabolic process; INTERACTS WITH 17beta-estradiol (ortholog); benzo[a]pyrene (ortholog); bisphenol A (ortholog).
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC120100348; small nucleolar RNA SNORD35
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,746,648 - 104,746,727 (-)NCBIGRCr8
mRatBN7.2195,610,185 - 95,610,264 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,610,185 - 95,610,264 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1101,121,136 - 101,121,215 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:27820699  


Genomics

Comparative Map Data
Snord35a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,746,648 - 104,746,727 (-)NCBIGRCr8
mRatBN7.2195,610,185 - 95,610,264 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,610,185 - 95,610,264 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1101,121,136 - 101,121,215 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1q22NCBI
SNORD35A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,491,175 - 49,491,260 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,491,175 - 49,491,260 (+)EnsemblGRCh38hg38GRCh38
GRCh371949,994,432 - 49,994,517 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,686,244 - 54,686,329 (+)NCBINCBI36Build 36hg18NCBI36
Celera1946,863,755 - 46,863,840 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,371,971 - 46,372,056 (+)NCBIHuRef
CHM1_11949,995,706 - 49,995,791 (+)NCBICHM1_1
T2T-CHM13v2.01952,491,140 - 52,491,225 (+)NCBIT2T-CHM13v2.0
Snord35a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,775,771 - 44,775,859 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,775,770 - 44,775,859 (-)EnsemblGRCm39 Ensembl
GRCm38745,126,347 - 45,126,435 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,126,346 - 45,126,435 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,381,717 - 52,381,805 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,994,389 - 44,994,477 (-)NCBIMGSCv36mm8
Celera740,579,439 - 40,579,527 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.14NCBI
LOC119869908
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1106,594,503 - 106,594,589 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01107,531,290 - 107,531,376 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11107,204,340 - 107,204,426 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,846,394 - 106,846,480 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,687,511 - 107,687,597 (-)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)185424647100358001Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)194494440117601394Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)190532338123479925Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)192948896144267916Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)190664883143200202Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)15034351099980958Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192184926137184926Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005500116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000079563
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl195,610,185 - 95,610,264 (-)Ensembl
RefSeq Acc Id: XR_005500116
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,746,648 - 104,746,727 (-)NCBI
mRatBN7.2195,610,185 - 95,610,264 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-59717 BioCyc
Ensembl Genes ENSRNOG00000060031 Ensembl
NCBI Gene LOC120100348 ENTREZGENE
PhenoGen Snord35a PhenoGen
RatGTEx ENSRNOG00000060031 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-08 Snord35a  small nucleolar RNA, C/D box 35A  LOC120100348  small nucleolar RNA SNORD35  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120100348  small nucleolar RNA SNORD35  Snord35a  small nucleolar RNA, C/D box 35A  Data merged from RGD:15013016 737654 PROVISIONAL
2021-01-27 LOC120100348  small nucleolar RNA SNORD35      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 Snord35a  small nucleolar RNA, C/D box 35A      Symbol and Name status set to provisional 45752 PROVISIONAL