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Gene: Sycn (syncollin) Rattus norvegicus
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Symbol: Sycn
Name: syncollin
Description: Predicted to be involved in regulation of calcium ion-dependent exocytosis. Localizes to the secretory granule membrane. Orthologous to human SYCN (syncollin); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: proximal small intestine-specific protein 9; Syl
Orthologs:
Homo sapiens (human) : SYCN (syncollin)  HGNC  Alliance
Mus musculus (house mouse) : Sycn (syncollin)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sycn (syncollin)
Pan paniscus (bonobo/pygmy chimpanzee) : SYCN (syncollin)
Canis lupus familiaris (dog) : SYCN (syncollin)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sycn (syncollin)
Sus scrofa (pig) : SYCN (syncollin)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0185,219,827 - 85,220,239 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0186,434,274 - 86,434,686 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4183,651,275 - 83,651,687 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1183,729,387 - 83,729,798 (+)NCBI
Celera178,226,789 - 78,227,201 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Sycn
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 620862
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.