Apoe (apolipoprotein E) - Rat Genome Database
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Gene: Apoe (apolipoprotein E) Rattus norvegicus
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Symbol: Apoe
Name: apolipoprotein E
RGD ID: 2138
Description: Exhibits several functions, including amyloid-beta binding activity; hydroxyapatite binding activity; and phospholipid binding activity. Involved in several processes, including cellular response to alcohol; neurogenesis; and regulation of lipid metabolic process. Localizes to several cellular components, including discoidal high-density lipoprotein particle; low-density lipoprotein particle; and triglyceride-rich plasma lipoprotein particle. Colocalizes with early endosome and microtubule. Used to study artery disease (multiple); familial hyperlipidemia; fatty liver disease (multiple); glomerulosclerosis; and middle cerebral artery infarction. Biomarker of several diseases, including glomerulonephritis (multiple); hyperhomocysteinemia; hypertension; sciatic neuropathy; and transient cerebral ischemia. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease (multiple); artery disease (multiple); cerebrovascular disease (multiple); eye disease (multiple); and familial hyperlipidemia (multiple). Orthologous to human APOE (apolipoprotein E); PARTICIPATES IN altered lipoprotein metabolic pathway; lipoprotein metabolic pathway; Alzheimer's disease pathway; INTERACTS WITH (+)-schisandrin B; (25R)-cholest-5-ene-3beta,26-diol; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: apo-E; APOEA
Orthologs:
Homo sapiens (human) : APOE (apolipoprotein E)  HGNC  Alliance
Mus musculus (house mouse) : Apoe (apolipoprotein E)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Apoe (apolipoprotein E)
Pan paniscus (bonobo/pygmy chimpanzee) : APOE (apolipoprotein E)
Canis lupus familiaris (dog) : APOE (apolipoprotein E)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Apoe (apolipoprotein E)
Sus scrofa (pig) : APOE (apolipoprotein E)
Chlorocebus sabaeus (African green monkey) : APOE (apolipoprotein E)
Heterocephalus glaber (naked mole-rat) : Apoe (apolipoprotein E)
more info ...
Allele / Splice: Apoeem8Mcwi   Apoeem7Mcwi   Apoeem9Mcwi   Apoeem1Sage  
Genetic Models: SD-Apoeem1Sage SS-Apoeem9Mcwi SS-Apoeem8Mcwi SS-Apoeem7Mcwi
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0180,612,894 - 80,616,820 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,612,895 - 80,617,057 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,878,372 - 81,882,298 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4179,003,634 - 79,006,387 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1179,081,854 - 79,083,684 (-)NCBI
Celera173,813,122 - 73,817,046 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
abdominal aortic aneurysm  (ISO)
adenocarcinoma  (ISO)
age related macular degeneration 1  (ISO)
Alzheimer's disease  (IEP,ISO)
Alzheimer's disease 2  (ISO)
Alzheimer's disease 3  (ISO)
Alzheimer's disease 4  (ISO)
amyloidosis  (ISO)
amyotrophic lateral sclerosis  (ISO)
angle-closure glaucoma  (ISO)
aortic atherosclerosis  (IMP)
arteriosclerosis  (ISO)
atherosclerosis  (ISO)
atopic dermatitis  (ISO)
B-Cell Chronic Lymphocytic Leukemia  (ISO)
beta thalassemia  (ISO)
bile duct cancer  (ISO)
Brain Injuries  (ISO)
breast cancer  (ISO)
Broad-Betalipoproteinemia  (ISO)
cardiovascular system disease  (ISO)
carotid artery disease  (ISO)
carotid stenosis  (ISO)
cerebral amyloid angiopathy  (ISO)
Cerebral Hemorrhage  (ISO)
cerebral infarction  (ISO)
cerebrovascular disease  (ISO)
Chemical and Drug Induced Liver Injury  (ISO)
cholelithiasis  (ISO)
cholestasis  (ISO)
Chronic Brain Injury  (ISO)
Chronic Cerebral Hypoperfusion  (IEP)
Chronic Hepatitis B  (ISO)
Chronic Hepatitis C  (ISO)
cognitive disorder  (ISO)
Cognitive Dysfunction  (ISO)
congestive heart failure  (ISO)
coronary artery disease  (IMP,ISO)
Coronary Disease  (ISO)
Coumarin Sensitivity  (ISO)
dementia  (ISO)
diabetes mellitus  (ISO)
Diabetic Nephropathies  (ISO)
diabetic retinopathy  (ISO)
dilated cardiomyopathy  (ISO)
Disease Progression  (ISO)
Dyslipidemias  (ISO)
Emphysema  (ISO)
end stage renal disease  (ISO)
Endotoxemia  (ISO)
exfoliation syndrome  (ISO)
Experimental Autoimmune Encephalomyelitis  (IEP)
Experimental Diabetes Mellitus  (IEP)
familial combined hyperlipidemia  (ISO)
familial hyperlipidemia  (IDA,IMP,ISO)
fatty liver disease  (IMP)
fetal alcohol spectrum disorder  (ISO)
Fetal Growth Retardation  (IEP)
gallbladder cancer  (ISO)
glaucoma  (ISO)
glomerulonephritis  (ISO)
glomerulosclerosis  (IDA,IEP)
Habitual Abortions  (ISO)
Hearing Loss  (ISO)
hepatocellular carcinoma  (ISO)
herpes simplex  (ISO)
Herpes Simplex Encephalitis  (ISO)
herpes simplex virus keratitis  (ISO)
Hypercholesterolemia  (IMP,ISO)
hyperhomocysteinemia  (IEP)
Hyperlipoproteinemia Type II  (ISO)
hyperlipoproteinemia type III  (ISO)
hypertension  (IEP,ISO)
Hypertriglyceridemia  (IMP,ISO)
hyperuricemia  (ISO)
hypothyroidism  (IEP)
kidney failure  (ISO)
Klebsiella Infections  (ISO)
Kuhnt-Junius degeneration  (ISO)
Lewy body dementia  (ISO)
Lipoprotein Glomerulopathy  (ISO)
low tension glaucoma  (ISO)
lung carcinoma  (ISO)
Lung Neoplasms  (ISO)
macular degeneration  (ISO)
malaria  (ISO)
Mammary Neoplasms, Experimental  (ISO)
membranous glomerulonephritis  (IEP)
Memory Disorders  (ISO)
Mercury Poisoning  (ISO)
middle cerebral artery infarction  (IDA)
multiple myeloma  (ISO)
multiple sclerosis  (ISO)
myocardial infarction  (ISO)
Myocardial Ischemia  (ISO)
Neoplasm Metastasis  (ISO)
nephrotic syndrome  (ISO)
Nerve Degeneration  (ISO)
non-alcoholic fatty liver disease  (IDA)
obesity  (ISO)
open-angle glaucoma  (ISO)
pancreatic cancer  (IEP)
Parkinson's disease  (ISO)
Parkinsonian Disorders  (ISO)
Peripheral Nerve Injuries  (IEP,ISO)
Plaque, Atherosclerotic  (ISO)
Pregnancy Complications, Infectious  (IEP)
Presenile and Senile Dementia  (ISO)
primary cutaneous amyloidosis  (ISO)
primary open angle glaucoma  (ISO)
proteinuria  (ISO)
psoriasis  (ISO)
Puromycin Aminonucleoside Nephrosis  (IEP)
relapsing-remitting multiple sclerosis  (ISO)
retinal disease  (ISO)
schizophrenia  (IEA,ISO)
sciatic neuropathy  (IEP)
sea-blue histiocytosis  (ISO)
sensorineural hearing loss  (ISO)
Sjogren's syndrome  (ISO)
sleep apnea  (ISO)
Spinal Cord Injuries  (IEP,ISO)
Splenomegaly  (ISO)
Spontaneous Abortions  (ISO)
Stroke  (ISO)
Subarachnoid Hemorrhage  (ISO)
transient cerebral ischemia  (IEP)
type 1 diabetes mellitus  (ISO)
type 2 diabetes mellitus  (ISO)
Vascular System Injuries  (IEP,ISO)
Venous Thrombosis  (ISO)
Ventricular Dysfunction, Left  (ISO)
visual epilepsy  (ISO)
warfarin resistance  (ISO)
warfarin sensitivity  (ISO)
Wilson disease  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(+)-schisandrin B  (EXP)
(25R)-cholest-5-ene-3beta,26-diol  (EXP)
(S)-nicotine  (ISO)
1,1-dichloroethene  (ISO)
11-dehydro-thromboxane B2  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-amino-2-deoxy-D-galactopyranose  (EXP)
2-amino-2-deoxy-D-glucopyranose  (ISO)
2-butoxyethanol  (ISO)
2-methyl-6-(phenylethynyl)pyridine  (ISO)
26-hydroxycholesterol  (EXP)
3',5'-cyclic GMP  (ISO)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5-triiodo-L-thyronine  (EXP)
3-chloropropane-1,2-diol  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (EXP)
6-oxoprostaglandin F1alpha  (ISO)
7,12-dimethyltetraphene  (ISO)
8-epi-prostaglandin F2alpha  (ISO)
acenocoumarol  (ISO)
acetamide  (EXP)
acetylcholine  (ISO)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucosamine  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
ammonium chloride  (EXP)
amphibole asbestos  (EXP)
arachidonic acid  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
aspartame  (ISO)
atorvastatin calcium  (ISO)
benzo[a]pyrene  (ISO)
beta-D-glucosamine  (ISO)
bezafibrate  (EXP,ISO)
bifenthrin  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
BQ 123  (ISO)
Brodifacoum  (EXP)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
Calcimycin  (ISO)
calcium atom  (EXP,ISO)
calcium(0)  (EXP,ISO)
capsaicin  (ISO)
captan  (ISO)
carbon nanotube  (ISO)
cerium trichloride  (ISO)
cetirizine  (ISO)
cetrorelix  (ISO)
chloropicrin  (ISO)
chloroquine  (EXP)
chlorpyrifos  (ISO)
cholesterol  (EXP,ISO)
cisplatin  (ISO)
clofibrate  (ISO)
clofibric acid  (EXP)
cobalt atom  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
curcumin  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
cypermethrin  (EXP,ISO)
D-glucose  (ISO)
DDE  (ISO)
Deoxycorticosterone acetate  (EXP)
desogestrel  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
diazinon  (EXP)
diethylstilbestrol  (ISO)
dimethylarsinic acid  (ISO)
dimethylarsinous acid  (ISO)
dipyridamole  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
elemental selenium  (ISO)
enalapril  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP,ISO)
ethanolamine  (EXP)
felodipine  (ISO)
fenvalerate  (EXP)
Fexofenadine hydrochloride  (ISO)
flusilazole  (ISO)
flutamide  (EXP)
fluvastatin  (ISO)
folic acid  (ISO)
folpet  (ISO)
furan  (EXP)
gemfibrozil  (EXP)
genistein  (ISO)
glucose  (ISO)
glutathione  (ISO)
GW 3965  (EXP,ISO)
GW 4064  (ISO)
GW 7647  (ISO)
high-density lipoprotein cholesterol  (ISO)
hydrazine  (EXP)
hydrogen peroxide  (EXP)
indometacin  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
isotretinoin  (ISO)
ivabradine  (ISO)
kaempferol  (ISO)
kainic acid  (ISO)
ketamine  (EXP,ISO)
kuwanone G  (ISO)
L-ascorbic acid  (EXP)
lansoprazole  (ISO)
lead diacetate  (EXP,ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
lipopolysaccharide  (ISO)
lovastatin  (ISO)
mechlorethamine  (EXP)
menadione  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methyl beta-cyclodextrin  (ISO)
methylmercury chloride  (ISO)
microcystin-LR  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
monosodium L-glutamate  (EXP,ISO)
morphine  (EXP)
myricitrin  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
N-tosyl-L-phenylalanyl chloromethyl ketone  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
nicotine  (ISO)
nimesulide  (ISO)
nitric oxide  (ISO)
NONOate(1-)  (ISO)
notoginsenoside R1  (ISO)
obeticholic acid  (ISO)
ochratoxin A  (EXP)
oleic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
palbociclib  (ISO)
paracetamol  (EXP,ISO)
paricalcitol  (ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (EXP)
phenobarbital  (EXP)
phenylephrine  (ISO)
phenytoin  (ISO)
phosphorus atom  (ISO)
phosphorus(.)  (ISO)
phytosterols  (ISO)
pirinixic acid  (EXP)
potassium chloride  (EXP)
probucol  (ISO)
propanal  (ISO)
Pyridostigmine bromide  (EXP)
quercetin  (ISO)
resveratrol  (EXP,ISO)
retinyl acetate  (ISO)
rotenone  (ISO)
sarin  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
simvastatin  (EXP,ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
streptozocin  (EXP,ISO)
sunitinib  (ISO)
superoxide  (ISO)
T-2 toxin  (EXP)
tamoxifen  (ISO)
taurocholic acid  (EXP)
tert-butyl hydroperoxide  (EXP,ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
theaflavin  (ISO)
titanium dioxide  (ISO)
tolcapone  (EXP)
topotecan  (EXP)
tributylstannane  (EXP)
Trihexyphenidyl  (ISO)
trimellitic anhydride  (ISO)
triolein  (EXP)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
Tropicamide  (ISO)
Tungsten carbide  (ISO)
valproic acid  (EXP,ISO)
valsartan  (ISO)
vanadyl sulfate  (EXP)
varenicline  (ISO)
vitamin E  (ISO)
vitamin K  (ISO)
vitexin  (ISO)
warfarin  (ISO)
zearalenone  (ISO)
zinc atom  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
aging  (IDA)
AMPA glutamate receptor clustering  (IEA,ISO)
amyloid precursor protein metabolic process  (IEA,ISO)
artery morphogenesis  (ISO)
axon regeneration  (ISO)
cellular calcium ion homeostasis  (ISO)
cellular oxidant detoxification  (IEA)
cellular response to cholesterol  (IEP)
cellular response to ethanol  (IEP)
cellular response to growth factor stimulus  (IEP)
cellular response to interleukin-1  (IEP)
cGMP-mediated signaling  (IEA,ISO)
cholesterol catabolic process  (IBA,ISO)
cholesterol efflux  (IEA,ISO,ISS)
cholesterol homeostasis  (IEA,ISO)
cholesterol metabolic process  (IEA,ISO)
chylomicron remnant clearance  (IEA,ISO,ISS)
circulatory system development  (ISO)
fatty acid homeostasis  (IEA,ISO)
G protein-coupled receptor signaling pathway  (IEA,ISO)
gene expression  (ISO)
high-density lipoprotein particle assembly  (IEA,ISO,ISS)
high-density lipoprotein particle clearance  (IEA,ISO)
high-density lipoprotein particle remodeling  (IEA,ISO)
intermediate-density lipoprotein particle clearance  (IEA,ISO,ISS)
intermembrane lipid transfer  (IEA)
lipid homeostasis  (ISO)
lipid metabolic process  (ISO)
lipid transport  (IDA)
lipid transport involved in lipid storage  (ISO)
lipoprotein biosynthetic process  (IEA,ISO,ISS)
lipoprotein catabolic process  (IBA,ISO)
lipoprotein metabolic process  (IDA,ISO)
locomotory exploration behavior  (IEA,ISO)
long-chain fatty acid transport  (IEA,ISO)
long-term memory  (IEA,ISO)
low-density lipoprotein particle remodeling  (ISO)
maintenance of location in cell  (ISO)
negative regulation of amyloid fibril formation  (ISO,ISS)
negative regulation of amyloid-beta formation  (IEA,ISO)
negative regulation of blood coagulation  (ISO)
negative regulation of blood vessel endothelial cell migration  (IEA,ISO)
negative regulation of canonical Wnt signaling pathway  (IEA,ISO)
negative regulation of cellular protein metabolic process  (ISO)
negative regulation of cholesterol biosynthetic process  (IDA,IEA,ISO)
negative regulation of cholesterol efflux  (ISO)
negative regulation of dendritic spine development  (ISO)
negative regulation of dendritic spine maintenance  (ISO)
negative regulation of endothelial cell migration  (ISO)
negative regulation of endothelial cell proliferation  (IEA,ISO)
negative regulation of gene expression  (ISO)
negative regulation of inflammatory response  (ISO)
negative regulation of lipid biosynthetic process  (ISO)
negative regulation of lipid transport across blood-brain barrier  (ISO)
negative regulation of long-term synaptic potentiation  (IEA,ISO)
negative regulation of MAP kinase activity  (IEA,ISO)
negative regulation of neuron apoptotic process  (IBA,IDA)
negative regulation of neuron death  (ISO)
negative regulation of neuron projection development  (IEA,ISO)
negative regulation of phospholipid efflux  (ISO)
negative regulation of platelet activation  (IEA,ISO)
negative regulation of postsynaptic membrane organization  (ISO)
negative regulation of protein secretion  (IEA,ISO)
negative regulation of triglyceride metabolic process  (ISO)
neuron projection development  (IEA,ISO)
neuron projection regeneration  (TAS)
nitric oxide mediated signal transduction  (IEA,ISO)
NMDA glutamate receptor clustering  (IEA,ISO)
oligodendrocyte differentiation  (IEP)
peripheral nervous system axon regeneration  (IEP)
phospholipid efflux  (IEA,ISO)
positive regulation by host of viral process  (IEA,ISO)
positive regulation of amyloid-beta clearance  (ISO,ISS)
positive regulation of amyloid-beta formation  (ISO)
positive regulation of axon extension  (IDA)
positive regulation of cholesterol efflux  (IEA,ISO)
positive regulation of cholesterol esterification  (IEA,ISO)
positive regulation of dendritic spine development  (IEA,ISO)
positive regulation of dendritic spine maintenance  (IEA,ISO)
positive regulation of endocytosis  (IEA,ISO)
positive regulation of ERK1 and ERK2 cascade  (IEA,ISO)
positive regulation of heparan sulfate binding  (IEA,ISO)
positive regulation of heparan sulfate proteoglycan binding  (IEA,ISO)
positive regulation of lipid biosynthetic process  (IEA,ISO)
positive regulation of lipid transport across blood-brain barrier  (IEA,ISO)
positive regulation of low-density lipoprotein particle receptor catabolic process  (IEA,ISO)
positive regulation of membrane protein ectodomain proteolysis  (IEA,ISO)
positive regulation of neurofibrillary tangle assembly  (ISO)
positive regulation of neuron death  (ISO)
positive regulation of neuron projection development  (ISO)
positive regulation of nitric-oxide synthase activity  (IBA,IEA,ISO)
positive regulation of phospholipid efflux  (IEA,ISO)
positive regulation of presynaptic membrane organization  (ISO)
positive regulation of transcription, DNA-templated  (IEA,ISO)
protein import  (IEA,ISO)
protein localization  (ISO)
receptor-mediated endocytosis  (IEA,ISO)
regulation of amyloid fibril formation  (IEA,ISO)
regulation of amyloid precursor protein catabolic process  (ISO)
regulation of amyloid-beta clearance  (IBA,IEA,ISO)
regulation of apoptotic process  (ISO)
regulation of behavioral fear response  (IEA,ISO)
regulation of Cdc42 protein signal transduction  (IEA,ISO)
regulation of cellular response to very-low-density lipoprotein particle stimulus  (IEA,ISO)
regulation of cholesterol metabolic process  (ISO)
regulation of gene expression  (ISO)
regulation of innate immune response  (ISO)
regulation of neuron death  (ISO)
regulation of plasma lipoprotein particle levels  (ISO)
regulation of proteasomal protein catabolic process  (IEA,ISO)
regulation of protein metabolic process  (ISO)
regulation of protein-containing complex assembly  (IEA,ISO)
regulation of synapse organization  (ISO)
regulation of tau-protein kinase activity  (ISO)
regulation of triglyceride metabolic process  (IDA)
response to caloric restriction  (IEA,ISO)
response to D-galactosamine  (IEP)
response to dietary excess  (ISO)
response to ethanol  (IEP)
response to insulin  (IEP)
response to oxidative stress  (ISO)
response to retinoic acid  (IEP)
response to tumor necrosis factor  (IEP)
response to zinc ion  (IEP)
reverse cholesterol transport  (IEA,ISO)
triglyceride homeostasis  (ISO)
triglyceride metabolic process  (IEA,ISO)
triglyceride-rich lipoprotein particle clearance  (ISO,ISS)
vasodilation  (ISO)
very-low-density lipoprotein particle clearance  (IEA,ISO,ISS)
very-low-density lipoprotein particle remodeling  (IEA,ISO)
virion assembly  (IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
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Additional References at PubMed
PMID:210174   PMID:210175   PMID:1384047   PMID:1423598   PMID:1530612   PMID:1911868   PMID:1917954   PMID:2280190   PMID:2745454   PMID:2762297   PMID:3020048   PMID:3771793  
PMID:3797247   PMID:4066713   PMID:6190813   PMID:7566652   PMID:7592957   PMID:7635945   PMID:7683668   PMID:7766086   PMID:7798939   PMID:8071364   PMID:8089103   PMID:8127890  
PMID:8185566   PMID:8245722   PMID:8300609   PMID:8340399   PMID:8647961   PMID:8773783   PMID:8939961   PMID:8995232   PMID:9003062   PMID:9186920   PMID:9240444   PMID:9300780  
PMID:9325076   PMID:9488694   PMID:9649566   PMID:9685360   PMID:9788969   PMID:9826706   PMID:11120757   PMID:11162594   PMID:11305869   PMID:11551841   PMID:11553788   PMID:12042316  
PMID:12401887   PMID:12870266   PMID:12950167   PMID:13130124   PMID:14595002   PMID:14741101   PMID:14754908   PMID:15269218   PMID:15489334   PMID:15654758   PMID:15866734   PMID:15950758  
PMID:16230502   PMID:16273551   PMID:16376010   PMID:16443932   PMID:16497717   PMID:16502470   PMID:16524875   PMID:16802110   PMID:16805831   PMID:16935699   PMID:17012232   PMID:17126342  
PMID:17154273   PMID:17305370   PMID:17326667   PMID:17336988   PMID:17720994   PMID:18288929   PMID:18360691   PMID:18377911   PMID:18559657   PMID:19056867   PMID:19362542   PMID:19382209  
PMID:19414061   PMID:19717566   PMID:19816508   PMID:19946888   PMID:20005821   PMID:20456011   PMID:20458337   PMID:20551380   PMID:21593558   PMID:21630459   PMID:21700703   PMID:21784977  
PMID:22206666   PMID:22516433   PMID:22637583   PMID:22674573   PMID:22871113   PMID:23103361   PMID:23142051   PMID:23376485   PMID:23533145   PMID:23620513   PMID:23640054   PMID:23658023  
PMID:23676495   PMID:23741427   PMID:23845000   PMID:24154541   PMID:24259049   PMID:24328732   PMID:24345162   PMID:24412220   PMID:24446231   PMID:24769233   PMID:24814386   PMID:25015123  
PMID:25122793   PMID:25207746   PMID:25778834   PMID:26397958   PMID:26545012   PMID:26782580   PMID:27044754   PMID:27068509   PMID:27277003   PMID:27477018   PMID:27559042   PMID:27683909  
PMID:28111074   PMID:28164773   PMID:28356228   PMID:29166645   PMID:29336888   PMID:30303984   PMID:30958617   PMID:31432127  


Genomics

Comparative Map Data
Apoe
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0180,612,894 - 80,616,820 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,612,895 - 80,617,057 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,878,372 - 81,882,298 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4179,003,634 - 79,006,387 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1179,081,854 - 79,083,684 (-)NCBI
Celera173,813,122 - 73,817,046 (-)NCBICelera
Cytogenetic Map1q21NCBI
APOE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1944,905,791 - 44,909,393 (+)EnsemblGRCh38hg38GRCh38
GRCh381944,905,796 - 44,909,393 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371945,409,039 - 45,412,650 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361950,100,879 - 50,104,490 (+)NCBINCBI36hg18NCBI36
Build 341950,100,878 - 50,104,489NCBI
Celera1942,213,361 - 42,216,972 (+)NCBI
Cytogenetic Map19q13.32NCBI
HuRef1941,839,825 - 41,843,436 (+)NCBIHuRef
CHM1_11945,411,760 - 45,415,406 (+)NCBICHM1_1
Apoe
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39719,430,169 - 19,434,326 (-)NCBI
GRCm38719,696,244 - 19,701,310 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,696,109 - 19,699,188 (-)EnsemblGRCm38mm10GRCm38
MGSCv37720,281,593 - 20,284,515 (-)NCBIGRCm37mm9NCBIm37
MGSCv36718,854,794 - 18,857,554 (-)NCBImm8
Celera717,102,329 - 17,105,251 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.94NCBI
Apoe
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555551,999,711 - 2,001,888 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555551,998,170 - 2,002,003 (+)NCBIChiLan1.0ChiLan1.0
APOE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11950,459,906 - 50,463,490 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1950,459,906 - 50,463,490 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01941,853,669 - 41,857,252 (+)NCBIMhudiblu_PPA_v0panPan3
APOE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1110,525,722 - 110,528,440 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11110,525,717 - 110,528,534 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Apoe
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049367061,512,438 - 1,516,805 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APOE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl651,372,259 - 51,377,794 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1651,373,113 - 51,375,333 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,269,973 - 47,272,195 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap6q1.2-q2.12NCBI
APOE
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl638,376,887 - 38,381,438 (+)Ensembl
ChlSab1.1638,377,154 - 38,381,219 (+)NCBI
Apoe
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249071,752,322 - 1,755,308 (+)NCBI

Position Markers
RH94767  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0180,612,708 - 80,612,942NCBIRnor6.0
Rnor_5.0181,878,186 - 81,878,420UniSTSRnor5.0
RGSC_v3.4179,003,448 - 79,003,682UniSTSRGSC3.4
Celera173,812,936 - 73,813,170UniSTS
Cytogenetic Map1q21UniSTS
RH94459  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0180,612,703 - 80,612,855NCBIRnor6.0
Rnor_5.0181,878,181 - 81,878,333UniSTSRnor5.0
RGSC_v3.4179,003,443 - 79,003,595UniSTSRGSC3.4
Celera173,812,931 - 73,813,083UniSTS
Cytogenetic Map1q21UniSTS
UniSTS:532416  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0180,613,699 - 80,614,162NCBIRnor6.0
Rnor_5.0181,879,177 - 81,879,640UniSTSRnor5.0
Celera173,813,927 - 73,814,390UniSTS
Cytogenetic Map1q21UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)125439386904217Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15655769122614963Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1565577285706974Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)11131448983657083Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11131448983657083Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11131448983657083Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11131448983657083Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11131448983657083Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11131448983657083Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11131448983657083Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123406428108057505Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)125951907130917265Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134993530173445086Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13537750894364229Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)135377692217372257Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13585416780854167Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13585416780854167Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13585416780854167Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14190724986907249Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143579208126240667Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143579208126240667Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143579208126240667Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143579208126240667Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143579208126240667Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)143579208126240667Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143579208126240667Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)149147799156446783Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14954732883657083Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14957857794578577Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149578577169852184Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149578693217054291Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15052271494225616Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15385134883657083Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15385134883657083Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)157761301104391981Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)158209327103209327Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)158354072161711996Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)164588516125875986Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)166113339122614963Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)16722768394201552Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)179134941113593716Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)179689548124689548Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)17968976594909507Rat


Genetic Models
This gene Apoe is modified in the following models/strains
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:77
Interacting mature miRNAs:84
Transcripts:ENSRNOT00000041891
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 47 35 29 28 10
Medium 3 43 23 12 19 12 8 11 46 35 31 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001270681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_138828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AABR07002678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01004212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J00705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J02582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X04979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000041891   ⟹   ENSRNOP00000050968
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl180,612,895 - 80,615,704 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000080453   ⟹   ENSRNOP00000071702
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl180,612,895 - 80,617,057 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091574   ⟹   ENSRNOP00000068937
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl180,612,895 - 80,615,525 (-)Ensembl
RefSeq Acc Id: NM_001270681   ⟹   NP_001257610
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0180,612,894 - 80,615,704 (-)NCBI
Rnor_5.0181,878,372 - 81,882,298 (-)NCBI
Celera173,813,122 - 73,815,932 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001270682   ⟹   NP_001257611
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0180,612,894 - 80,615,704 (-)NCBI
Rnor_5.0181,878,372 - 81,882,298 (-)NCBI
Celera173,813,122 - 73,815,932 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001270683   ⟹   NP_001257612
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0180,612,894 - 80,616,820 (-)NCBI
Rnor_5.0181,878,372 - 81,882,298 (-)NCBI
Celera173,813,122 - 73,817,046 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001270684   ⟹   NP_001257613
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0180,612,894 - 80,615,525 (-)NCBI
Rnor_5.0181,878,372 - 81,882,298 (-)NCBI
Celera173,813,122 - 73,815,753 (-)NCBI
Sequence:
RefSeq Acc Id: NM_138828   ⟹   NP_620183
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0180,612,894 - 80,615,704 (-)NCBI
Rnor_5.0181,878,372 - 81,882,298 (-)NCBI
RGSC_v3.4179,003,634 - 79,006,387 (-)RGD
Celera173,813,122 - 73,815,932 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001257610 (Get FASTA)   NCBI Sequence Viewer  
  NP_001257611 (Get FASTA)   NCBI Sequence Viewer  
  NP_001257612 (Get FASTA)   NCBI Sequence Viewer  
  NP_001257613 (Get FASTA)   NCBI Sequence Viewer  
  NP_620183 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA40755 (Get FASTA)   NCBI Sequence Viewer  
  AAA40756 (Get FASTA)   NCBI Sequence Viewer  
  AAH60313 (Get FASTA)   NCBI Sequence Viewer  
  AAH86581 (Get FASTA)   NCBI Sequence Viewer  
  CAA28650 (Get FASTA)   NCBI Sequence Viewer  
  EDM08150 (Get FASTA)   NCBI Sequence Viewer  
  EDM08151 (Get FASTA)   NCBI Sequence Viewer  
  EDM08152 (Get FASTA)   NCBI Sequence Viewer  
  EDM08153 (Get FASTA)   NCBI Sequence Viewer  
  EDM08154 (Get FASTA)   NCBI Sequence Viewer  
  EDM08155 (Get FASTA)   NCBI Sequence Viewer  
  EDM08156 (Get FASTA)   NCBI Sequence Viewer  
  EDM08157 (Get FASTA)   NCBI Sequence Viewer  
  EDM08158 (Get FASTA)   NCBI Sequence Viewer  
  EDM08159 (Get FASTA)   NCBI Sequence Viewer  
  EDM08160 (Get FASTA)   NCBI Sequence Viewer  
  EDM08161 (Get FASTA)   NCBI Sequence Viewer  
  EDM08162 (Get FASTA)   NCBI Sequence Viewer  
  EDM08163 (Get FASTA)   NCBI Sequence Viewer  
  EDM08164 (Get FASTA)   NCBI Sequence Viewer  
  EDM08165 (Get FASTA)   NCBI Sequence Viewer  
  EDM08166 (Get FASTA)   NCBI Sequence Viewer  
  EDM08167 (Get FASTA)   NCBI Sequence Viewer  
  EDM08168 (Get FASTA)   NCBI Sequence Viewer  
  EDM08169 (Get FASTA)   NCBI Sequence Viewer  
  P02650 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_620183   ⟸   NM_138828
- Peptide Label: precursor
- UniProtKB: P02650 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257612   ⟸   NM_001270683
- Peptide Label: precursor
- UniProtKB: P02650 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257611   ⟸   NM_001270682
- Peptide Label: precursor
- UniProtKB: P02650 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257610   ⟸   NM_001270681
- Peptide Label: precursor
- UniProtKB: P02650 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257613   ⟸   NM_001270684
- Peptide Label: precursor
- UniProtKB: P02650 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071702   ⟸   ENSRNOT00000080453
RefSeq Acc Id: ENSRNOP00000050968   ⟸   ENSRNOT00000041891
RefSeq Acc Id: ENSRNOP00000068937   ⟸   ENSRNOT00000091574

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689780
Promoter ID:EPDNEW_R304
Type:initiation region
Name:Apoe_1
Description:apolipoprotein E
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0180,615,673 - 80,615,733EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)