Nanos2 (nanos C2HC-type zinc finger 2)

Gene: Nanos2 (nanos C2HC-type zinc finger 2) Rattus norvegicus

Analyze

Symbol:

Nanos2

Name:

nanos C2HC-type zinc finger 2

RGD ID:

1562436

Description:

Predicted to enable mRNA binding activity. Predicted to be involved in several processes, including germ-line stem cell population maintenance; negative regulation of meiotic nuclear division; and regulation of gene expression. Predicted to act upstream of or within spermatogenesis. Predicted to be located in P-body and nucleus. Predicted to be active in perinuclear region of cytoplasm. Orthologous to human NANOS2 (nanos C2HC-type zinc finger 2); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; bisphenol A; thioacetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC365213; nanos homolog 2; nanos homolog 2 (Drosophila); RGD1562436; similar to Nanos2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NANOS2 (nanos C2HC-type zinc finger 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Nanos2 (nanos C2HC-type zinc finger 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nanos2 (nanos C2HC-type zinc finger 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NANOS2 (nanos C2HC-type zinc finger 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NANOS2 (nanos C2HC-type zinc finger 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nanos2 (nanos C2HC-type zinc finger 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NANOS2 (nanos C2HC-type zinc finger 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NANOS2 (nanos C2HC-type zinc finger 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nanos2 (nanos C2HC-type zinc finger 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	NANOS2 (nanos C2HC-type zinc finger 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Nanos2 (nanos C2HC-type zinc finger 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nanos2 (nanos homolog 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	nos-1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	nos	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	nos	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	nos-2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	87,763,716 - 87,765,176 (+)	NCBI		GRCr8
mRatBN7.2	1	78,635,668 - 78,637,128 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	78,635,668 - 78,637,128 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	84,024,658 - 84,026,118 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	92,582,270 - 92,583,730 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	85,779,762 - 85,781,222 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	79,894,450 - 79,895,910 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	79,894,450 - 79,895,910 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	81,155,091 - 81,156,551 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	78,341,105 - 78,342,565 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	73,101,755 - 73,103,215 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

male infertility (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,2',5,5'-tetrachlorobiphenyl (ISO)

4,4'-sulfonyldiphenol (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

busulfan (ISO)

fulvestrant (ISO)

mono(2-ethylhexyl) phthalate (ISO)

PCB138 (ISO)

resveratrol (ISO)

silver atom (ISO)

silver(0) (ISO)

thioacetamide (EXP)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

germ-line stem cell population maintenance (ISO)

mRNA catabolic process (ISO)

negative regulation of meiotic nuclear division (ISO)

negative regulation of translation (IBA,ISO)

oogenesis (IBA)

positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (ISO)

spermatogenesis (ISO)

Cellular Component

cytoplasm (ISO)

nucleus (ISO)

P-body (ISO)

perinuclear region of cytoplasm (IBA,ISO)

Molecular Function

mRNA binding (IBA,ISO)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12947200	PMID:18281459	PMID:19168545	PMID:19745153	PMID:20133598	PMID:22190708	PMID:22899867	PMID:24183939	PMID:24736845	PMID:30888312

Genomics

Comparative Map Data

Nanos2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	87,763,716 - 87,765,176 (+)	NCBI		GRCr8
mRatBN7.2	1	78,635,668 - 78,637,128 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	78,635,668 - 78,637,128 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	84,024,658 - 84,026,118 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	92,582,270 - 92,583,730 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	85,779,762 - 85,781,222 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	79,894,450 - 79,895,910 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	79,894,450 - 79,895,910 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	81,155,091 - 81,156,551 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	78,341,105 - 78,342,565 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	73,101,755 - 73,103,215 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

NANOS2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	45,913,214 - 45,914,778 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	45,913,214 - 45,914,778 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	46,416,472 - 46,418,036 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	51,108,312 - 51,109,876 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	51,108,314 - 51,109,876	NCBI
Celera	19	43,221,499 - 43,223,063 (-)	NCBI		Celera
Cytogenetic Map	19	q13.32	NCBI
HuRef	19	42,844,824 - 42,846,388 (-)	NCBI		HuRef
CHM1_1	19	46,418,965 - 46,420,529 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	48,740,655 - 48,742,219 (-)	NCBI		T2T-CHM13v2.0

Nanos2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	18,721,449 - 18,722,887 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	18,721,325 - 18,722,887 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	18,987,524 - 18,988,962 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	18,987,400 - 18,988,962 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	19,572,873 - 19,574,311 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	18,146,046 - 18,147,484 (+)	NCBI		MGSCv36	mm8
Celera	7	16,399,407 - 16,400,845 (+)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	9.45	NCBI

Nanos2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955574	333,116 - 333,529 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955574	333,007 - 333,529 (-)	NCBI	ChiLan1.0	ChiLan1.0

NANOS2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	52,077,294 - 52,086,515 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	53,948,686 - 53,957,908 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	42,922,655 - 42,924,679 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	51,458,466 - 51,460,116 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	51,459,529 - 51,459,945 (-)	Ensembl	panpan1.1		panPan2

NANOS2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	109,716,634 - 109,717,701 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	109,716,699 - 109,717,115 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	109,202,035 - 109,203,102 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	110,251,017 - 110,252,084 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	110,251,082 - 110,251,498 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	109,925,501 - 109,926,568 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	109,560,220 - 109,561,287 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	110,428,944 - 110,430,011 (+)	NCBI		UU_Cfam_GSD_1.0

Nanos2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	17,884,913 - 17,885,868 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936706	2,232,265 - 2,232,657 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936706	2,232,265 - 2,232,657 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NANOS2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	52,219,418 - 52,219,834 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	52,218,889 - 52,219,834 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	47,481,251 - 47,481,667 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NANOS2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	39,359,581 - 39,361,699 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	39,360,640 - 39,361,056 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	19,001,703 - 19,003,343 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nanos2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624832	7,309,334 - 7,310,645 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Nanos2
12 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	116
Count of miRNA genes:	96
Interacting mature miRNAs:	106
Transcripts:	ENSRNOT00000057963
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	11481312	82174945	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	11481312	82174945	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	11481312	82174945	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	11481312	82174945	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	32737273	90665040	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	34836858	79836858	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2302059	Pia36	Pristane induced arthritis QTL 36	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	43333002	88333002	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	49361465	82174945	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49393172	94393172	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	53863041	90532583	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	53895117	82174945	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	53895117	82174945	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	56732668	98773277	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	56949932	101949932	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	57336763	151090257	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	65789093	115540829	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	66023617	118608521	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	72197680	90508767	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	77494165	122494165	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	77857876	122857876	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	77876254	106047988	Rat
61344	Bp29	Blood pressure QTL 29	7.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	78350581	123350581	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	78430536	123430536	Rat
61433	Cia2	Collagen induced arthritis QTL 2	5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	78430754	91209302	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	78479925	123479925	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	circulatory system	endocrine system	hemolymphoid system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium								2
Low						4		11
Below cutoff	2	9	10	1	1	60	1	15	9	1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC110846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000057963 ⟹ ENSRNOP00000054772

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	78,635,668 - 78,637,128 (+)	Ensembl
Rnor_6.0 Ensembl	1	79,894,450 - 79,895,910 (+)	Ensembl

RefSeq Acc Id:

NM_001108908 ⟹ NP_001102378

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	87,763,716 - 87,765,176 (+)	NCBI
mRatBN7.2	1	78,635,668 - 78,637,128 (+)	NCBI
Rnor_6.0	1	79,894,450 - 79,895,910 (+)	NCBI
Rnor_5.0	1	81,155,091 - 81,156,551 (+)	NCBI
RGSC_v3.4	1	78,341,105 - 78,342,565 (+)	RGD
Celera	1	73,101,755 - 73,103,215 (+)	RGD

Sequence:

show sequence

ATAACTCCTGCTCCTGCCTTCTGACCTCACAGCCCCTGTCCCAGACCCTCTCCAGTGCCCACAG
CCACACATAAGTGTCATGGACCTGCCACCCTTTGACAGGTGGAGAGACTACTTTAACCTGAGCC
AGGTGGTGCTGGGTATAATTCAGAGCCGGAAGCAAAGACTGGAGGATGAGGTGTCTGAGGAACT
GGCCTCCAGGCCCCAAGGGATGAGTGAGCGGGGCCTGGAGGTCTCCCCCGGAAGTCTGGCTACT
GCATGCAACTTTTGCAAGCACAACGGAGAGTCTCGTCACGTCTACACCTCACACCAGCTGAAGA
CGCCTGAAGGGGTGGTAGTGTGTCCCATCCTGAGGCATTACGTATGTCCTCTCTGTGGGGCCAC
TGGCGACCAGGCGCATACACTCAAGTATTGCCCACTCAACAGCAGCCAGCAGTCTCTCTACCGT
CGCAGTGGACGAAACTCAGCTGGTCGCAGAGTCAAGCGATAAGTGAGGCCCTGTGAGGTACCTA
TCACCCATGTCCCAGACCCTCCTTCTGATCCTAGCACCCTCTGCTATGCTCACCCAGCCCTCTG
GAGGTCCCTGGATCTTAACGTTCTCTGTGCCTTCAAGATCCTGAAACATTGGGAAATACTGGCA
GCCCAGACTGTGTCTCAGACAGTCCTGGTTACTGGGAGAACCATTCTCCATGGACCGTGTGAAT
CTTGGGTAGCTTCTTTTGGATTATGAGGGACTGGTGATGATGCTAAGATGGTCTCTTTGACTTC
TCAGTTCCCCTGTGAAGATCCCTTGGGGGATCCTTGGATTTGCCATCCTGTAGAATTCTAGTCT
GACGGGCCAGTCTTCAGAATCTGGGGACAGGGCCAGAGACGGATCCTGATTGTCACTGCCAAGA
AGTTGATGCTGGCGCTGACTGAGAGACCATCCATCTACCTTCACCTTCAGCACTGGCAGACTCA
AAATTTCTCCATGGACCATTCAAGTTCAGCCCTCAGTTCCATGATTGTGCCGTCTGTCCGAAAT
AAGAGGGTTCAGGAACGAGAGGAGGGTCGGTCGAGAGGAGGGTCGGGTCGGGACCCCCTGGGAA
GGCTGCCAGATTATTTGTAACCTCACAGACTGCTTCGGGTGAGCTCAAGCCCACAGATCTCTCG
CTTCATTACTAACCCCAGTTCACTCTGTTCCTGCTCCCAGCCCCAGTCGTTGATGGATCCCTAC
CCCCGACCCCTGTGGGTGATAGACATGTCTCTCTTCCACCTGTACAGTATTGTTGAGTGTGTTA
AGTCAGTGTGCGTCCCACGGTGAGGAGAGTCTGAGACCTCATGGGAATGGCGACTGCTTAGGTT
TTAATTTTAGGGTCAGAAAAGAATGCCAATTGGGTTTTATGCTGTTTAAGAGGTGGGCTTGGAT
ATTGGATGAGGAGTGGGTGCTGTCTCCTGAATAAAGTGTTGTTGTTAGTCGGC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102378	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM08248	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000054772
	ENSRNOP00000054772.2

RefSeq Acc Id:	NP_001102378 ⟸ NM_001108908
- UniProtKB:	D4A4B3 (UniProtKB/TrEMBL), A6J8I6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLPPFDRWRDYFNLSQVVLGIIQSRKQRLEDEVSEELASRPQGMSERGLEVSPGSLATACNFC KHNGESRHVYTSHQLKTPEGVVVCPILRHYVCPLCGATGDQAHTLKYCPLNSSQQSLYRRSGRN SAGRRVKR hide sequence

RefSeq Acc Id:

ENSRNOP00000054772 ⟸ ENSRNOT00000057963

Protein Domains

Nanos-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A4B3-F1-model_v2	AlphaFold	D4A4B3	1-136	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562436	AgrOrtholog
BioCyc Gene	G2FUF-60546	BioCyc
Ensembl Genes	ENSRNOG00000038088	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000057963	ENTREZGENE
	ENSRNOT00000057963.3	UniProtKB/TrEMBL
Gene3D-CATH	4.10.60.30	UniProtKB/TrEMBL
InterPro	Nanos_sf	UniProtKB/TrEMBL
	Znf_Nanos	UniProtKB/TrEMBL
	Znf_nanos-typ	UniProtKB/TrEMBL
KEGG Report	rno:365213	UniProtKB/TrEMBL
NCBI Gene	365213	ENTREZGENE
PANTHER	NANOS HOMOLOG 2	UniProtKB/TrEMBL
	Znf_Nanos	UniProtKB/TrEMBL
Pfam	zf-nanos	UniProtKB/TrEMBL
PhenoGen	Nanos2	PhenoGen
PROSITE	ZF_NANOS	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000038088	RatGTEx
UniProt	A6J8I6	ENTREZGENE, UniProtKB/TrEMBL
	D4A4B3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-06-10	Nanos2	nanos C2HC-type zinc finger 2	Nanos2	nanos homolog 2 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-29	Nanos2	nanos homolog 2 (Drosophila)	RGD1562436_predicted	similar to Nanos2 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1562436_predicted	similar to Nanos2 (predicted)	LOC365213	similar to Nanos2	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC365213	similar to Nanos2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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