Cd37 (CD37 molecule) - Rat Genome Database

Name: Cd37
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Cd37 (CD37 molecule) Rattus norvegicus

Analyze

Symbol:

Cd37

Name:

CD37 molecule

RGD ID:

62035

Description:

Predicted to act upstream of or within several processes, including defense response to protozoan; negative regulation of leukocyte activation; and positive regulation of immunoglobulin production. Predicted to be located in immunological synapse. Orthologous to human CD37 (CD37 molecule); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

CD37 antigen; leukocyte antigen CD37; MRC OX-44

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CD37 (CD37 molecule)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Cd37 (CD37 antigen)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cd37 (CD37 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CD37 (CD37 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CD37 (CD37 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cd37 (CD37 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CD37 (CD37 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CD37 (CD37 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cd37 (CD37 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TVP23A (trans-golgi network vesicle protein 23 homolog A)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Cd37 (CD37 antigen)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CD37 (CD37 molecule)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cd37	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	Tsp96F	Alliance	DIOPT (Ensembl Compara\|InParanoid\|PANTHER)
Caenorhabditis elegans (roundworm):	tsp-20	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	cd37	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	95,719,171 - 95,724,662 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	95,719,190 - 95,724,648 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	101,104,579 - 101,109,734 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	1	109,577,250 - 109,582,405 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	1	102,867,647 - 102,872,802 (-)	NCBI	Rnor_WKY
Rnor_6.0	1	101,230,470 - 101,236,061 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	101,230,533 - 101,236,065 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	102,295,444 - 102,300,935 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	95,709,961 - 95,715,116 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	95,788,071 - 95,793,227 (-)	NCBI
Celera	1	89,977,460 - 89,982,615 (-)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy 12 (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-di-tert-butyl-4-methylphenol (ISO)

2-butoxyethanol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (EXP)

4-hydroxyphenyl retinamide (ISO)

9-cis-retinoic acid (EXP)

acetamide (EXP)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bexarotene (EXP)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

carbon nanotube (ISO)

chloroprene (ISO)

choline (ISO)

chrysene (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

Cuprizon (EXP)

dichloromethane (EXP)

dimethylarsinic acid (ISO)

ethylbenzene (EXP)

flavonoids (EXP)

folic acid (ISO)

gentamycin (EXP)

glycidol (EXP)

hexachlorobenzene (EXP)

isotretinoin (ISO)

L-methionine (ISO)

lead(0) (ISO)

lead(2+) (ISO)

methotrexate (ISO)

methylarsonic acid (ISO)

N-nitrosodiethylamine (ISO)

nickel atom (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

piperonyl butoxide (ISO)

prothioconazole (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

Tesaglitazar (EXP)

testosterone (ISO)

tetraphene (ISO)

trichloroethene (EXP)

triptonide (ISO)

troglitazone (EXP,ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

defense response to protozoan (ISO)

negative regulation of myeloid dendritic cell activation (ISO)

negative regulation of T cell proliferation (ISO)

positive regulation of immunoglobulin production (ISO)

regulation of defense response to virus (ISO)

regulation of humoral immune response (ISO)

T cell proliferation (ISO)

Cellular Component

immunological synapse (IEA,ISO)

membrane (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	The rat leukocyte antigen MRC OX-44 is a member of a new family of cell surface proteins which appear to be involved in growth regulation.	Bellacosa A, etal., Mol Cell Biol 1991 May;11(5):2864-72.
2.	The primary structure of the human leukocyte antigen CD37, a species homologue of the rat MRC OX-44 antigen.	Classon BJ, etal., J Exp Med 1990 Sep 1;172(3):1007.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	GOA pipeline	RGD automated data pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
9.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
10.	Characterisation of mouse CD37: cDNA and genomic cloning.	Tomlinson MG and Wright MD, Mol Immunol 1996 Jul;33(10):867-72.

Additional References at PubMed

PMID:2466944	PMID:10891477	PMID:15489334	PMID:19946888	PMID:20458337	PMID:20709950	PMID:21930792

Genomics

Comparative Map Data

Cd37
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	95,719,171 - 95,724,662 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	95,719,190 - 95,724,648 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	101,104,579 - 101,109,734 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	1	109,577,250 - 109,582,405 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	1	102,867,647 - 102,872,802 (-)	NCBI	Rnor_WKY
Rnor_6.0	1	101,230,470 - 101,236,061 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	101,230,533 - 101,236,065 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	102,295,444 - 102,300,935 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	95,709,961 - 95,715,116 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	95,788,071 - 95,793,227 (-)	NCBI
Celera	1	89,977,460 - 89,982,615 (-)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI

CD37
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	49,335,406 - 49,340,606 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	19	49,335,171 - 49,343,335 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	49,838,663 - 49,843,863 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	54,530,489 - 54,535,675 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	54,530,546 - 54,535,613	NCBI
Celera	19	46,705,529 - 46,710,715 (+)	NCBI		Celera
Cytogenetic Map	19	q13.33	NCBI
HuRef	19	46,215,487 - 46,220,673 (+)	NCBI		HuRef
CHM1_1	19	49,840,523 - 49,845,709 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	52,332,834 - 52,338,034 (+)	NCBI		T2T-CHM13v2.0

Cd37
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	44,883,056 - 44,888,701 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	44,883,056 - 44,888,539 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	45,233,632 - 45,239,340 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	45,233,632 - 45,239,115 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	52,489,002 - 52,494,209 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	45,101,674 - 45,106,882 (-)	NCBI		MGSCv36	mm8
Celera	7	40,689,498 - 40,694,754 (-)	NCBI		Celera
Cytogenetic Map	7	B3	NCBI
cM Map	7	29.2	NCBI

Cd37
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955559	1,465,937 - 1,471,249 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955559	1,465,937 - 1,471,249 (-)	NCBI	ChiLan1.0	ChiLan1.0

CD37
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	19	57,373,489 - 57,378,483 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	46,349,845 - 46,355,294 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	55,273,914 - 55,279,562 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	55,273,914 - 55,279,562 (+)	Ensembl	panpan1.1		panPan2

CD37
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	107,130,553 - 107,136,602 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	107,128,996 - 107,136,081 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	106,713,852 - 106,719,859 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	107,650,867 - 107,656,876 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	1	107,323,776 - 107,329,780 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	106,965,941 - 106,971,950 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	107,807,087 - 107,813,087 (-)	NCBI		UU_Cfam_GSD_1.0

Cd37
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	21,619,176 - 21,624,634 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936664	3,237,597 - 3,242,806 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936664	3,237,747 - 3,242,824 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CD37
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	54,440,727 - 54,448,188 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	54,431,413 - 54,448,195 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CD37
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	42,516,901 - 42,522,695 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	42,517,571 - 42,525,598 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	22,439,360 - 22,444,685 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cd37
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	4,837,247 - 4,841,756 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624832	4,837,247 - 4,842,126 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cd37
3 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	149
Count of miRNA genes:	111
Interacting mature miRNAs:	119
Transcripts:	ENSRNOT00000066834
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	56732668	98773277	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	56949932	101949932	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	57336763	151090257	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	65789093	115540829	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	66023617	118608521	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	77494165	122494165	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	77857876	122857876	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	77876254	106047988	Rat
61344	Bp29	Blood pressure QTL 29	7.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	78350581	123350581	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	78430536	123430536	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	78479925	123479925	Rat
4889494	Scort2	Serum corticosterone level QTL 2	4.2		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	80592172	125592172	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	82174743	118944897	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)	1	83547917	128547917	Rat
2300324	Fetw1	Fetal weight QTL 1	12.1	0.005	fetal growth trait (VT:0004201)	fetal body weight (CMO:0002080)	1	85424647	100358001	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	87580395	150700247	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	90508614	173018436	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	90508614	180359386	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	90532338	123479925	Rat
1300153	Bp171	Blood pressure QTL 171	3.37		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	90664883	143200202	Rat
2293142	Bp314	Blood pressure QTL 314			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	92184926	137184926	Rat
724567	Tcas6	Tongue tumor susceptibility QTL 6	6.85		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	1	92948896	144267916	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	94494440	117601394	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94494440	172949803	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	94494440	181830018	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	94494440	198211706	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	94494440	198324465	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94642722	214537671	Rat

Markers in Region

RH128432

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	95,718,880 - 95,719,085 (+)	MAPPER	mRatBN7.2
mRatBN7.2	8	122,576,421 - 122,576,626 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	132,007,713 - 132,007,917	NCBI	Rnor6.0
Rnor_6.0	1	101,230,178 - 101,230,382	NCBI	Rnor6.0
Rnor_5.0	1	102,295,152 - 102,295,356	UniSTS	Rnor5.0
Rnor_5.0	8	131,162,510 - 131,162,714	UniSTS	Rnor5.0
RGSC_v3.4	1	95,709,662 - 95,709,866	UniSTS	RGSC3.4
RGSC_v3.4	8	127,666,927 - 127,667,131	UniSTS	RGSC3.4
Celera	1	89,977,161 - 89,977,365	UniSTS
Cytogenetic Map	8	q32	UniSTS
Cytogenetic Map	1	q22	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2		10	2	19	2					3	9
Low	1	33	47	39		39	8	11	68	35	35	2	8
Below cutoff		8							6		3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_017124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC099450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC059144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X53517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000066834 ⟹ ENSRNOP00000059092

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	95,719,636 - 95,724,648 (-)	Ensembl
Rnor_6.0 Ensembl	1	101,230,533 - 101,236,065 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000114337 ⟹ ENSRNOP00000077102

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	95,719,190 - 95,724,371 (-)	Ensembl

RefSeq Acc Id:

NM_017124 ⟹ NP_058820

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	95,719,180 - 95,724,335 (-)	NCBI
Rnor_6.0	1	101,230,477 - 101,235,633 (-)	NCBI
Rnor_5.0	1	102,295,444 - 102,300,935 (-)	NCBI
RGSC_v3.4	1	95,709,961 - 95,715,116 (-)	RGD
Celera	1	89,977,460 - 89,982,615 (-)	RGD

Sequence:

show sequence

GGCCAACACCTCTTCTGTCTGGGTTCCTCAAGCTGCTCGCTCCCCATCTAGGCGAAGATGTCCG
CCCAAGAGAGTTGCCTCAGCCTCATCAAGTACTTCCTCTTCGTTTTCAACCTCTTCTTCTTTGT
ACTAGGAGGCCTGATTTTCTGCTTTGGCACCTGGATCCTCATTGACAAGACCAGCTTCGTGTCC
TTTGTGGGCTTGTCCTTCGTGCCACTGCAGACCTGGTCCAAGGTCCTGTCGGTCTCGGGTGTCC
TCACCATGGCCCTGGCTCTCCTGGGCTGTGTGGGGGCTCTAAAGGAGCTGCGCTGTCTTCTGGG
CCTGTATTTCGGAATGCTGCTGCTCCTGTTTGCCACACAGATTACCTTGGGGATCCTCATTTCC
ACTCAGCGAGTCCGGCTGGAGCGAAGGGTGCAGGAATTGGTGTTACGGACCATCCAGAGCTACC
GCACGAATCCGGATGAGACAGCTGCTGAGGAGAGCTGGGACTATGCGCAGTTTCAGCTGCGCTG
CTGCGGTTGGCAATCTCCGCGGGACTGGAACAAGGCCCAGATGCTGAAAGCAAACGGGTCCGAA
GAGCTCTTTGTGCCCTGCTCCTGCTACAATTCCACCGCGACCAATGACTCCTCCGGCTTTGATA
AGCTCTTTCTCTCCCAGCTAAGCCGGCTGGGGCCGCGGGCGAAGCTGAGGCAGACTGCTGACAT
ATGTGCACTCCCCGCAAAAGCCCATATATACCGTGAGGGCTGCGCGCGGAGCCTCCAGAAGTGG
CTGCACAACAATATCATCTCCATAGTGGGAATTTGTCTGGGAGTCGGTCTTCTTGAGCTCGGCT
TCATGACACTCTCGATATTCCTGTGTAGAAATCTGGATCACGTCTATGACCGGCTGGCCCGGTA
CCGCTAGGCCCCAACCCACCGGTTGGCACCCACGCACCTCCATGCAGTCAGGAACTGTTTCCTT
CCTGGTTGGTTACAGGCTTGGAGCCCTGTGCCTCAGGCCTCATTCTCTGGGGACCCAGATGTCT
GCCCTAAGACAGCCTTCACTTCCCCCACAGGGCCAGGGACTTTCGAGCCCAGCTTCCTTCCCTG
CTCCCTCCTCCCCACACCATCTGTCTGCCACCTCCCACATGACACCTCAAATAAATCCCCTTCT
TTTTTG

hide sequence

RefSeq Acc Id:

XM_006228981 ⟹ XP_006229043

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	95,719,171 - 95,724,653 (-)	NCBI
Rnor_6.0	1	101,230,470 - 101,236,052 (-)	NCBI
Rnor_5.0	1	102,295,444 - 102,300,935 (-)	NCBI

Sequence:

show sequence

AGCATGCCAGTTCAAGGGCAATGGGTGCTAAGCAGAAGCCCACAAGATGCAAGGGGCGGAGCCA
GTAGCCAGTGAGGTCAGAGTGTCTGTGAGGTTGGCCTCTGCAGACAGACAGGGCCCTGAGGTCC
CAGGACCCAAGTGAGTGGAAGTCCATCAGAAGCCCCTGTGCGTCCTGCCTGAGCCATGGACACC
CACAAGGAACCCCCCATTGTGTCCCTGGTCCCCGCATATTCTAAGGACCCTCAGGCGAAGATGT
CCGCCCAAGAGAGTTGCCTCAGCCTCATCAAGTACTTCCTCTTCGTTTTCAACCTCTTCTTCTT
TGTACTAGGAGGCCTGATTTTCTGCTTTGGCACCTGGATCCTCATTGACAAGACCAGCTTCGTG
TCCTTTGTGGGCTTGTCCTTCGTGCCACTGCAGACCTGGTCCAAGGTCCTGTCGGTCTCGGGTG
TCCTCACCATGGCCCTGGCTCTCCTGGGCTGTGTGGGGGCTCTAAAGGAGCTGCGCTGTCTTCT
GGGCCTGTATTTCGGAATGCTGCTGCTCCTGTTTGCCACACAGATTACCTTGGGGATCCTCATT
TCCACTCAGCGAGTCCGGCTGGAGCGAAGGGTGCAGGAATTGGTGTTACGGACCATCCAGAGCT
ACCGCACGAATCCGGATGAGACAGCTGCTGAGGAGAGCTGGGACTATGCGCAGTTTCAGCTGCG
CTGCTGCGGTTGGCAATCTCCGCGGGACTGGAACAAGGCCCAGATGCTGAAAGCAAACGGGTCC
GAAGAGCTCTTTGTGCCCTGCTCCTGCTACAATTCCACCGCGACCAATGACTCCTCCGGCTTTG
ATAAGCTCTTTCTCTCCCAGCTAAGCCGGCTGGGGCCGCGGGCGAAGCTGAGGCAGACTGCTGA
CATATGTGCACTCCCCGCAAAAGCCCATATATACCGTGAGGGCTGCGCGCGGAGCCTCCAGAAG
TGGCTGCACAACAATATCATCTCCATAGTGGGAATTTGTCTGGGAGTCGGTCTTCTTGAGCTCG
GCTTCATGACACTCTCGATATTCCTGTGTAGAAATCTGGATCACGTCTATGACCGGCTGGCCCG
GTACCGCTAGGCCCCAACCCACCGGTTGGCACCCACGCACCTCCATGCAGTCAGGAACTGTTTC
CTTCCTGGTTGGTTACAGGCTTGGAGCCCTGTGCCTCAGGCCTCATTCTCTGGGGACCCAGATG
TCTGCCCTAAGACAGCCTTCACTTCCCCCACAGGGCCAGGGACTTTCGAGCCCAGCTTCCTTCC
CTGCTCCCTCCTCCCCACACCATCTGTCTGCCACCTCCCACATGACACCTCAAATAAATCCCCT
TCTTTTTTGGTAAAAA

hide sequence

RefSeq Acc Id:

XM_017588850 ⟹ XP_017444339

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	95,719,594 - 95,724,662 (-)	NCBI
Rnor_6.0	1	101,230,470 - 101,236,061 (-)	NCBI

Sequence:

show sequence

GACAGAGAGAGCATGCCAGTTCAAGGGCAATGGGTGCTAAGCAGAAGCCCACAAGATGCAAGGG
GCGGAGCCAGTAGCCAGTGAGGTCAGAGTGTCTGTGAGGTTGGCCTCTGCAGACAGACAGGGCC
CTGAGGTCCCAGGACCCAAGTGAGTGGAAGTCCATCAGAAGCCCCTGTGCGTCCTGCCTGAGCC
ATGGACACCCACAAGGAACCCCCCATTGTGTCCCTGGTCCCCGCATATTCTAAGGACCCTCAGG
CGAAGATGTCCGCCCAAGAGAGTTGCCTCAGCCTCATCAAGTACTTCCTCTTCGTTTTCAACCT
CTTCTTCTTTGTACTAGGAGGCCTGATTTTCTGCTTTGGCACCTGGATCCTCATTGACAAGACC
AGCTTCGTGTCCTTTGTGGGCTTGTCCTTCGTGCCACTGCAGACCTGGTCCAAGGTCCTGTCGG
TCTCGGGTGTCCTCACCATGGCCCTGGCTCTCCTGGGCTGTGTGGGGGCTCTAAAGGAGCTGCG
CTGTCTTCTGGGCCTGTATTTCGGAATGCTGCTGCTCCTGTTTGCCACACAGATTACCTTGGGG
ATCCTCATTTCCACTCAGCGAGTCCGGCTGGAGCGAAGGGTGCAGGAATTGGTGTTACGGACCA
TCCAGAGCTACCGCACGAATCCGGATGAGACAGCTGCTGAGGAGAGCTGGGACTATGCGCAGTT
TCAGCTGCGCTGCTGCGGTTGGCAATCTCCGCGGGACTGGAACAAGGCCCAGATGCTGAAAGCA
AACGGGTCCGAAGAGCTCTTTGTGCCCTGCTCCTGCTACAATTCCACCGCGACCAATGACTCCT
CCGGCTTTGATAAGCTCTTTCTCTCCCAGCTAAGCCGGCTGGGGCCGCGGGCGAAGCTGAGGCA
GACTGCTGACATATGTGCACTCCCCGCAAAAGCCCATATATACCGTGAGGGCTGCGCGCGGAGC
CTCCAGAAGTGGCTGCACAACAATATCATCTCCATAGTGGGAATTTGTCTGGGAGTCGGTCTTC
TTGAGGTGAGCGGGATGGCGCTGTGTCTGCAGCTACAGCGCCGAGCTATGGGCGGAGAGCCTGC
GCTGCCGCTGCCGGGAGCCGAGGGTTCGAACCCTACGCCAGGGCTGAACGCTGAAGGCAGCGGC
GGGCGCTGGGGCGGGCTAAGCAGCTGCAGCGGACGCAGTAGCATCCCGTGGGGCAGCTGGGGCA
TGGCGGGTGCCTGCCCCACATGGGGGGACAAGGCTCCACAAGGCAAGCTACCCATGGCACTGGG
CCCCTGGCCCTTGTGGGATTCAGAGGAGGAACCACCTGAGACCGAAAGTGCGGGAACTGAGGAG
GTCGAGGCACATCCGGAGGCTGCCGAGCCTCCAGAATAAAGGACCCTAGGCTTGCCTTGAGCTT
TTGCAGACTGCTGCTTGAGCTTTCTGTTCTCAACGCTGCCAATCCCAGCTCTTATGCGTACCCG
TTCTTTGCCTCCCCCTTTGAGTACCACCCCTTCTCCAACCCTGAACCATCTCCTTTTTCCCCAG
CTCGGCTTCATGACACTCTCGATATTCCTGTGTAGAAATCTGGATCACGTCTATGACCGGCTGG
CCCGGTACCGCTAGGCCCCAACCCACCGGTTGGCACCCACGCACCTCCATGCAGTCAGGAACTG
TTTCCTTCCTGGTTGGTTACAGGCTTGGAGCCCTGTGCCTCAGGCCTCATTCTCTGGGGACCCA
GATGTCTGCCCTAAGACAGCCTTCACTTCCCCCACAGGGCCAGGGACTTTCGAGCCCAGCTTCC
TTCCCTGCTCCCTCCTCCCCACACCATCTGTCTGCCACCTCCCACATGACACCTCAAATAAATC
CCCTTCTTTTTTGGTAAAAA

hide sequence

RefSeq Acc Id:

XM_017588851 ⟹ XP_017444340

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	95,719,594 - 95,724,345 (-)	NCBI
Rnor_6.0	1	101,230,470 - 101,235,778 (-)	NCBI

Sequence:

show sequence

GAAGAAGATAGGGCCCTAGCTGGCAGTCCCTAAATGAGCAGGGCTGGGTGGAGCTCCACCCCCG
GAACTTCCTCTTTCTCTGCCCTCTTCCTTTGTGCCTCTCAGTCTCAGTCTTTCTCTGTCCATTA
TCCCCCTTCCCCCCTGTGGCCAACACCTCTTCTGTCTGGGTTCCTCAAGCTGCTCGCTCCCCAT
CTAGGCGAAGATGTCCGCCCAAGAGAGTTGCCTCAGCCTCATCAAGTACTTCCTCTTCGTTTTC
AACCTCTTCTTCTTTGTACTAGGAGGCCTGATTTTCTGCTTTGGCACCTGGATCCTCATTGACA
AGACCAGCTTCGTGTCCTTTGCTTGTCCTTCGTGCCACTGCAGACCTGGTCCAAGGTCCTGTCG
GTCTCGGGTGTCCTCACCATGGCCCTGGCTCTCCTGGGCTGTGTGGGGGCTCTAAAGGAGCTGC
GCTGTCTTCTGGGCCTGTATTTCGGAATGCTGCTGCTCCTGTTTGCCACACAGATTACCTTGGG
GATCCTCATTTCCACTCAGCGAGTCCGGCTGGAGCGAAGGGTGCAGGAATTGGTGTTACGGACC
ATCCAGAGCTACCGCACGAATCCGGATGAGACAGCTGCTGAGGAGAGCTGGGACTATGCGCAGT
TTCAGCTGCGCTGCTGCGGTTGGCAATCTCCGCGGGACTGGAACAAGGCCCAGATGCTGAAAGC
AAACGGGTCCGAAGAGCTCTTTGTGCCCTGCTCCTGCTACAATTCCACCGCGACCAATGACTCC
TCCGGCTTTGATAAGCTCTTTCTCTCCCAGCTAAGCCGGCTGGGGCCGCGGGCGAAGCTGAGGC
AGACTGCTGACATATGTGCACTCCCCGCAAAAGCCCATATATACCGTGAGGGCTGCGCGCGGAG
CCTCCAGAAGTGGCTGCACAACAATATCATCTCCATAGTGGGAATTTGTCTGGGAGTCGGTCTT
CTTGAGGTGAGCGGGATGGCGCTGTGTCTGCAGCTACAGCGCCGAGCTATGGGCGGAGAGCCTG
CGCTGCCGCTGCCGGGAGCCGAGGGTTCGAACCCTACGCCAGGGCTGAACGCTGAAGGCAGCGG
CGGGCGCTGGGGCGGGCTAAGCAGCTGCAGCGGACGCAGTAGCATCCCGTGGGGCAGCTGGGGC
ATGGCGGGTGCCTGCCCCACATGGGGGGACAAGGCTCCACAAGGCAAGCTACCCATGGCACTGG
GCCCCTGGCCCTTGTGGGATTCAGAGGAGGAACCACCTGAGACCGAAAGTGCGGGAACTGAGGA
GGTCGAGGCACATCCGGAGGCTGCCGAGCCTCCAGAATAAAGGACCCTAGGCTTGCCTTGAGCT
TTTGCAGACTGCTGCTTGAGCTTTCTGTTCTCAACGCTGCCAATCCCAGCTCTTATGCGTACCC
GTTCTTTGCCTCCCCCTTTGAGTACCACCCCTTCTCCAACCCTGAACCATCTCCTTTTTCCCCA
GCTCGGCTTCATGACACTCTCGATATTCCTGTGTAGAAATCTGGATCACGTCTATGACCGGCTG
GCCCGGTACCGCTAGGCCCCAACCCACCGGTTGGCACCCACGCACCTCCATGCAGTCAGGAACT
GTTTCCTTCCTGGTTGGTTACAGGCTTGGAGCCCTGTGCCTCAGGCCTCATTCTCTGGGGACCC
AGATGTCTGCCCTAAGACAGCCTTCACTTCCCCCACAGGGCCAGGGACTTTCGAGCCCAGCTTC
CTTCCCTGCTCCCTCCTCCCCACACCATCTGTCTGCCACCTCCCACATGACACCTCAAATAAAT
CCCCTTCTTTTTTGGTAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_058820	(Get FASTA)	NCBI Sequence Viewer
	XP_006229043	(Get FASTA)	NCBI Sequence Viewer
	XP_017444339	(Get FASTA)	NCBI Sequence Viewer
	XP_017444340	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH59144	(Get FASTA)	NCBI Sequence Viewer
	CAA37596	(Get FASTA)	NCBI Sequence Viewer
	EDM07382	(Get FASTA)	NCBI Sequence Viewer
	EDM07383	(Get FASTA)	NCBI Sequence Viewer
	P31053	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_058820 ⟸ NM_017124

- UniProtKB:

P31053 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MSAQESCLSLIKYFLFVFNLFFFVLGGLIFCFGTWILIDKTSFVSFVGLSFVPLQTWSKVLSVS
GVLTMALALLGCVGALKELRCLLGLYFGMLLLLFATQITLGILISTQRVRLERRVQELVLRTIQ
SYRTNPDETAAEESWDYAQFQLRCCGWQSPRDWNKAQMLKANGSEELFVPCSCYNSTATNDSSG
FDKLFLSQLSRLGPRAKLRQTADICALPAKAHIYREGCARSLQKWLHNNIISIVGICLGVGLLE
LGFMTLSIFLCRNLDHVYDRLARYR

hide sequence

RefSeq Acc Id:	XP_006229043 ⟸ XM_006228981
- Peptide Label:	isoform X3
- UniProtKB:	A0A0H2UI08 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDTHKEPPIVSLVPAYSKDPQAKMSAQESCLSLIKYFLFVFNLFFFVLGGLIFCFGTWILIDKT SFVSFVGLSFVPLQTWSKVLSVSGVLTMALALLGCVGALKELRCLLGLYFGMLLLLFATQITLG ILISTQRVRLERRVQELVLRTIQSYRTNPDETAAEESWDYAQFQLRCCGWQSPRDWNKAQMLKA NGSEELFVPCSCYNSTATNDSSGFDKLFLSQLSRLGPRAKLRQTADICALPAKAHIYREGCARS LQKWLHNNIISIVGICLGVGLLELGFMTLSIFLCRNLDHVYDRLARYR hide sequence

RefSeq Acc Id:

XP_017444339 ⟸ XM_017588850

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDTHKEPPIVSLVPAYSKDPQAKMSAQESCLSLIKYFLFVFNLFFFVLGGLIFCFGTWILIDKT
SFVSFVGLSFVPLQTWSKVLSVSGVLTMALALLGCVGALKELRCLLGLYFGMLLLLFATQITLG
ILISTQRVRLERRVQELVLRTIQSYRTNPDETAAEESWDYAQFQLRCCGWQSPRDWNKAQMLKA
NGSEELFVPCSCYNSTATNDSSGFDKLFLSQLSRLGPRAKLRQTADICALPAKAHIYREGCARS
LQKWLHNNIISIVGICLGVGLLEVSGMALCLQLQRRAMGGEPALPLPGAEGSNPTPGLNAEGSG
GRWGGLSSCSGRSSIPWGSWGMAGACPTWGDKAPQGKLPMALGPWPLWDSEEEPPETESAGTEE
VEAHPEAAEPPE

hide sequence

RefSeq Acc Id:

XP_017444340 ⟸ XM_017588851

- Peptide Label:

isoform X2

- Sequence:

show sequence

MALALLGCVGALKELRCLLGLYFGMLLLLFATQITLGILISTQRVRLERRVQELVLRTIQSYRT
NPDETAAEESWDYAQFQLRCCGWQSPRDWNKAQMLKANGSEELFVPCSCYNSTATNDSSGFDKL
FLSQLSRLGPRAKLRQTADICALPAKAHIYREGCARSLQKWLHNNIISIVGICLGVGLLEVSGM
ALCLQLQRRAMGGEPALPLPGAEGSNPTPGLNAEGSGGRWGGLSSCSGRSSIPWGSWGMAGACP
TWGDKAPQGKLPMALGPWPLWDSEEEPPETESAGTEEVEAHPEAAEPPE

hide sequence

RefSeq Acc Id:

ENSRNOP00000059092 ⟸ ENSRNOT00000066834

RefSeq Acc Id:

ENSRNOP00000077102 ⟸ ENSRNOT00000114337

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P31053-F1-model_v2	AlphaFold	P31053	1-281	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:62035	AgrOrtholog
BioCyc Gene	G2FUF-59698	BioCyc
Ensembl Genes	ENSRNOG00000020699	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000059092	ENTREZGENE
	ENSRNOP00000059092.3	UniProtKB/TrEMBL
	ENSRNOP00000077102.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000066834	ENTREZGENE
	ENSRNOT00000066834.3	UniProtKB/TrEMBL
	ENSRNOT00000114337.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.1450.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:6887407	IMAGE-MGC_LOAD
InterPro	Tetraspanin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Tetraspanin/Peripherin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Tetraspanin_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Tetraspanin_EC2_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:29185	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:72894	IMAGE-MGC_LOAD
NCBI Gene	29185	ENTREZGENE
PANTHER	LEUKOCYTE ANTIGEN CD37	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR19282	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Tetraspanin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cd37	PhenoGen
PIRSF	Tetraspanin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS	TMFOUR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	TM4_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF48652	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR	TC233683
UniProt	A0A0H2UI08	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y7F5_RAT	UniProtKB/TrEMBL
	CD37_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-06-27	Cd37	CD37 molecule	Cd37	CD37 antigen	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

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Imported Disease Annotations - ClinVar