Fbxo17 (F-box protein 17) - Rat Genome Database

Name: Fbxo17
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Fbxo17 (F-box protein 17) Rattus norvegicus

Analyze

Symbol:

Fbxo17

Name:

F-box protein 17

RGD ID:

1308308

Description:

Predicted to contribute to ubiquitin protein ligase activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; glycoprotein catabolic process; and ubiquitin-dependent ERAD pathway. Predicted to localize to SCF ubiquitin ligase complex and cytoplasm. Orthologous to human FBXO17 (F-box protein 17); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

F-box only protein 17; Fbg4; Fbx17; Fbxo26; LOC292757

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FBXO17 (F-box protein 17)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Fbxo17 (F-box protein 17)	HGNC	EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Fbxo17 (F-box protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FBXO17 (F-box protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FBXO17 (F-box protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fbxo17 (F-box protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FBXO17 (F-box protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	FBXO17 (F-box protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fbxo17 (F-box protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	FBXO27 (F-box protein 27)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	FBXO17 (F-box protein 17)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Mus musculus (house mouse):	Fbxo17 (F-box protein 17)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	C14B1.3	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	1	86,903,762 - 86,919,238 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	86,914,137 - 86,919,236 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	88,084,918 - 88,100,373 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	83,828,307 - 83,843,719 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	83,906,417 - 83,921,828 (+)	NCBI
Celera	1	78,401,477 - 78,416,889 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

aflatoxin B2 (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

decabromodiphenyl ether (EXP)

dioxygen (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

folic acid (ISO)

methapyrilene (ISO)

methylparaben (ISO)

phenylmercury acetate (ISO)

quercetin (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

glycoprotein catabolic process (IBA)

protein ubiquitination (IEA)

SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (IBA)

ubiquitin-dependent ERAD pathway (IBA)

Cellular Component

cytoplasm (IBA)

SCF ubiquitin ligase complex (IBA,ISO,ISS)

Molecular Function

protein binding (ISO,ISS)

ubiquitin protein ligase activity (IBA)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated data pipeline
3.	RGD automated import pipeline for gene-chemical interactions
4.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:8889548	PMID:10531037	PMID:15489334	PMID:15520277	PMID:18203720	PMID:19028597

Genomics

Comparative Map Data

Fbxo17
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	1	86,903,762 - 86,919,238 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	86,914,137 - 86,919,236 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	88,084,918 - 88,100,373 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	83,828,307 - 83,843,719 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	83,906,417 - 83,921,828 (+)	NCBI
Celera	1	78,401,477 - 78,416,889 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

FBXO17
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	38,941,401 - 38,975,742 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	38,941,401 - 38,975,742 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	39,432,041 - 39,466,453 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	44,123,882 - 44,158,220 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	19	36,234,470 - 36,268,805 (-)	NCBI
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	35,878,641 - 35,912,924 (-)	NCBI		HuRef
CHM1_1	19	39,432,437 - 39,466,836 (-)	NCBI		CHM1_1

Fbxo17
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	28,416,176 - 28,437,570 (+)	NCBI	GRCm39		mm39
GRCm38	7	28,716,749 - 28,738,145 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	28,716,804 - 28,738,144 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	29,501,809 - 29,523,163 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	7	28,425,633 - 28,446,904 (+)	NCBI			mm8
Celera	7	23,285,120 - 23,298,551 (+)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI

Fbxo17
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	591,650 - 598,544 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	591,653 - 598,370 (+)	NCBI	ChiLan1.0	ChiLan1.0

FBXO17
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	44,590,799 - 44,624,871 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	44,590,799 - 44,624,871 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	19	36,041,892 - 36,075,757 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

FBXO17
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	1	114,161,051 - 114,188,356 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	1	114,161,226 - 114,188,354 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Fbxo17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936661	1,876,129 - 1,904,964 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FBXO17
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	47,732,303 - 47,759,606 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	47,733,064 - 47,759,646 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	43,280,735 - 43,326,470 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FBXO17
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	33,555,689 - 33,590,776 (-)	NCBI
ChlSab1.1 Ensembl	6	33,555,240 - 33,590,723 (-)	Ensembl

Fbxo17
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624794	12,275,383 - 12,303,527 (-)	NCBI

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	254393	86904217	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5655769	122614963	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	23406428	108057505	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	25951907	130917265	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34993530	173445086	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	35377508	94364229	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	35377692	217372257	Rat
2302059	Pia36	Pristane induced arthritis QTL 36	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	41907249	86907249	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43579208	126240667	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43579208	126240667	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43579208	126240667	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43579208	126240667	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43579208	126240667	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	cortical volumetric bone mineral density (CMO:0001730)	1	43579208	126240667	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43579208	126240667	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	49147799	156446783	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49578577	94578577	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49578577	169852184	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49578693	217054291	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	50522714	94225616	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	57761301	104391981	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	58209327	103209327	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	58354072	161711996	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	64588516	125875986	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	66113339	122614963	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	67227683	94201552	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	79134941	113593716	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	79689548	124689548	Rat
61433	Cia2	Collagen induced arthritis QTL 2	5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	79689765	94909507	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	82788437	239853971	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	83502376	128502376	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	83656882	126240667	Rat
61344	Bp29	Blood pressure QTL 29	7.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	85779320	130779320	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	85917265	130917265	Rat
4889494	Scort2	Serum corticosterone level QTL 2	4.2		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	86776571	131776571	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	260
Count of miRNA genes:	182
Interacting mature miRNAs:	192
Transcripts:	ENSRNOT00000027006
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium											1
Low	1	27	11		12		2	2	69	18	38	6	2
Below cutoff	1	16	29	24	7	24	6	9	5	17	2	5	6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AABR07002848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AABR07002849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01004462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BE120593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000027006 ⟹ ENSRNOP00000027006

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	86,914,137 - 86,919,236 (+)	Ensembl

RefSeq Acc Id:

NM_001013064 ⟹ NP_001013082

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	86,903,826 - 86,919,238 (+)	NCBI
Rnor_5.0	1	88,084,918 - 88,100,373 (+)	NCBI
RGSC_v3.4	1	83,828,307 - 83,843,719 (+)	RGD
Celera	1	78,401,477 - 78,416,889 (+)	RGD

Sequence:

show sequence

GCTCCTCTAGAGGACCCAGGTTCAACTTCCGGTACCTACATGGCCGCTCACAACCATTTCTAAT
TCCAGTCCTGGGGTTATGTCGCCCTCTTCTGGCCTCACAGGTATTTACTCAAGAGAATGCAGCC
TATGCCCACATAGACCTTCATGCATGAACACACTCACAGCGGCTTCATTCCTAGCAGCTCCAAA
TGGGAGACAACTCAAGCGTCCATCAAGGCATCCTGACTAGGTCTGTGACCTTGGGAGGCTGACG
CACCGACTCCACTTCACCCAGAGGACACCGGCGTCAGGACATGGGAGCCCAGCCCTCGCGACGG
CGGATGACCGAAGCTCAGCACATGGCTTTGGCCGAGCTGCCCCCGGAGTTGCTGCTGCAGGTGC
TGAGCCATGTGCCTCCTCGCGCGTTAGTGACCCGCTGCCGGCCGGTGTGCCGCGCCTGGCGCGA
CCTAGTAGATGGCCCAAGCGTATGGCTGCTGCAACTGGCTCGCGACCGCAGCGCGGAGGGCAGA
GCCCTCTACGCCTTGGCCCAGAGCTGCCCGGCCGACCGCAACGGCCACGACGACTTCCCACTCT
GTGCTCTGGCCCGCTTCTGCCTGCTAGCGCCGCTTGGCCGCAACCTCATCTACAACTCCTGCGG
AGAACAGGGCTTCAGAGGTTGGGAAGTGGAACATGGCGGGAACGGCTGGGCTGTGGAAAAGAAT
CTGACGATGGTGCCAGGGGCTCCTTCTCAAACCTGCTTCGTGACTTCTTTTGAGTGGTGCTTCA
AGAGGCAGCTTGTAGACCTGGTGAAGGAAGGAGTGTGGCAGGAGCTGCTGGACAGTGCCCAGAT
TGAGATCTACATAGCTGACTGGTGGGGCGCCCGTGAGAACTGCGGCTGCATCTACAGGCTTCGG
GTCCGCCTACTGGACGAACATGAAAACGAAGTGGTCAAGTTCTCTGCCTCACCCAACCCAGTCC
TTCAGTGGACTGAGAGGAGCTGCCGACAAGTCTCTCACGTCTTCACTGACTTTGGCAAGGGCAT
CCGCTATGTGTCCTTTGAGCAGTATGGAAGAGACACTCGTTCCTGGGTGGGACACTATGGTGCC
CTCGTGACCCACTCCACTGTGCGGGTCAGGATCCGTCTGTCCTAGCTGACTGGCTTGACACACT
GCCTTCTCCTGGATGGAATTAAAACCAAAGGTGGTTTTGCAGTCCCCAGCTGACAGCTATCTGG
GGGGAAAAGGAGATCCTGGGTGGCCCTCCTGCTGGGACAAACCAGGGACTACCAGCTTGTTCAG
AGCCTCCGTCTCTCAAGCAGGGACTACCATGAGGTGACGCAGTCATCTCTAGGTTGCTAAGCCT
GAGACCCACTTCATGTGTGGATCCCAGGGGGTAAACTGTTCAAAACAGCAGACCGAGCCGGACC
TGACAGCACACACTTCTAGTCCCAGCATTCTAGGTAGATGCAGGAGGGTTGGGAGTTCAAAGTC
ATCCTCAGCTACATGAGAGCCTGTCAAAAACAAAACAAAAAAACAAACAAAAACATCCAACAAA
CCAAGCTTGGAATTATAACAAAAGGCTACTTAAAAGAATACAGTGACAAAATTTTTTAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017588901 ⟹ XP_017444390

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	86,913,181 - 86,919,202 (+)	NCBI

Sequence:

show sequence

ATCGTCCACTGTCTGTTGGATTATATTTATACCCTTTCCAAACATCCCATGTTCTCTCGTGTGT
CTGCTCTAGCAAAATATCAAATGCCCTTTTCCCAGGCAGCTTCCAGAAAAACATGTCTGTCTTC
AGTCAAACAGCCTCCCACATGTCTGCTTCAGCAGAAACATCTTCTCGTAAGACAGTTTCCAGAA
AAACATCACATGACACAACCGAATCTCCAGATAAACCAGAAGTTTCCACTTCAGGGACTTAACT
TCAGAGAGACGTGAGGCTGCCAAGTAAGACTGTATTGTTCCTGTGGGTATAGGCACAGAGGAAC
TCAGAGCTGGAATTCAAACTACACTAGGTGTGAGAAGAAGCTAAGGGGTCGAGAGTGCATGCAA
GACTTTTAATGGTCAGCCATGGACTTGAAGCTGAAAGGGTGTAGGAACATAGGATTGGTGACCA
AAGTGACCTGGAAGGGTCGTAGGTCTCCAAGACACCAGAGAAAGTGAAGGAGAAAAGGAAATGA
TGGGCCCTGGGTCAGAATATGGTAGGCGGTGGACTCACCCCCACTCTGTAACAGATCTTCAGAA
GGGGGCCTGGTGGAGGGTAGAGACGGAATGATCTGGGTGCTCAGAGGAGCAAGGACGCTACTAC
TGGTCTGGAAGGAGCAAGAGAGGACATAAGAGGAGACTTGGATTCTAAAATAAGTTCAGGAAGA
AAGTGACGAGATATATAGTAAATTCCAAGGCCCAAGTGGATGGCACAAGTCTGAACAGTATGGT
TTTCCCCTCATTGTTGTTTGTAAAAGGTCTATGTGGGACAGGCTAAACTCAAATTCTCCTGCCT
CTGCTCCAGAGTGCTGTCATTACAGGCAGGCATGCACTCCACCACACCCTGCTGGGACTATATT
AGACTTGGAGGGGGTCTTTGGCCCCGGAGGAACAGGTGTGCTCTATATCCTTGTCTGCTGCCAG
GCATCCTGACTAGGTCTGTGACCTTGGGAGGCTGACGCACCGACTCCACTTCACCCAGAGGACA
CCGGCGTCAGGACATGGGAGCCCAGCCCTCGCGACGGCGGATGACCGAAGCTCAGCACATGGCT
TTGGCCGAGCTGCCCCCGGAGTTGCTGCTGCAGGTGCTGAGCCATGTGCCTCCTCGCGCGTTAG
TGACCCGCTGCCGGCCGGTGTGCCGCGCCTGGCGCGACCTAGTAGATGGCCCAAGCGTATGGCT
GCTGCAACTGGCTCGCGACCGCAGCGCGGAGGGCAGAGCCCTCTACGCCTTGGCCCAGAGCTGC
CCGGCCGACCGCAACGGCCACGACGACTTCCCACTCTGTGCTCTGGCCCGCTTCTGCCTGCTAG
CGCCGCTTGGCCGCAACCTCATCTACAACTCCTGCGGAGAACAGGGCTTCAGAGGTTGGGAAGT
GGAACATGGCGGGAACGGCTGGGCTGTGGAAAAGAATCTGACGATGGTGCCAGGGGCTCCTTCT
CAAACCTGCTTCGTGACTTCTTTTGAGTGGTGCTTCAAGAGGCAGCTTGTAGACCTGGTGAAGG
AAGGAGTGTGGCAGGAGCTGCTGGACAGTGCCCAGATTGAGATCTACATAGCTGACTGGTGGGG
CGCCCGTGAGAACTGCGGCTGCATCTACAGGCTTCGGGTCCGCCTACTGGACGAACATGAAAAC
GAAGTGGTCAAGTTCTCTGCCTCACCCAACCCAGTCCTTCAGTGGACTGAGAGGAGCTGCCGAC
AAGTCTCTCACGTCTTCACTGACTTTGGCAAGGGCATCCGCTATGTGTCCTTTGAGCAGTATGG
AAGAGACACTCGTTCCTGGGTGGGACACTATGGTGCCCTCGTGACCCACTCCACTGTGCGGGTC
AGGATCCGTCTGTCCTAGCTGACTGGCTTGACACACTGCCTTCTCCTGGATGGAATTAAAACCA
AAGGTGGTTTTGCAGTCCCCAGCTGACAGCTATCTGGGGGGAAAAGGAGATCCTGGGTGGCCCT
CCTGCTGGGACAAACCAGGGACTACCAGCTTGTTCAGAGCCTCCGTCTCTCAAGCAGGGACTAC
CATGAGGTGACGCAGTCATCTCTAGGTTGCTAAGCCTGAGACCCACTTCATGTGTGGATCCCAG
GGGGTAAACTGTTCAAAACAGCAGACCGAGCCGGACCTGACAGCACACACTTCTAGTCCCAGCA
TTCTAGGTAGATGCAGGAGGGTTGGGAGTTCAAAGTCATCCTCAGCTACATGAGAGCCTGTCAA
AAACAAAACAAAAAAACAAACAAAAACATCCAACAAACCAAGCTTGGAATTATAACAAAA

hide sequence

RefSeq Acc Id:

XM_017588902 ⟹ XP_017444391

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	86,912,095 - 86,919,202 (+)	NCBI

Sequence:

show sequence

AAACAAACAGGAAAAGGGACTAAAGGATTTCCCTTTTGGCCAGCAGTTAACCATTGCTAGGGCT
AACCAGTGAGTACTCAGTTTAAAAGAATCAGGTGATCCAAAAAAACTATCTCGTGGCCAGTCAT
TAGGGATGGATTGGAATGCCAATGGGGAAGTCAAGAATCAGGAAAAACAGCTGGGTATGGTGGC
TCACACCATGAATCCTGAAGCAGAGGCAGGTGAGTTCAAGGCCAATCTGTTCTACATAAGGTGT
TCCAGGTCAGCTAGCACCTATAGTGAGACTCTGTCACAAAAACAGAACAAAGCAGAAACCACAA
AACAAACAAAAAACAAAATAAACCGAAATGGTTCTAGGGACCATATGACTTCAGTTTGGGGAAT
TGTTTGACAAGATGGGGGAGCCTTATAAAAATGGGATGGCCGTGGCTAACACTTGGGAGGCAGA
GGGGGACGCTGGGTTTAAGGACAATAGCCTAGACATCACAGGGAAGAGGAAGGGAGAAAGGGAA
GGAAGAAGGAAGGGAGGGAGGGAGGAAGATGGGAGGAGAGAAAGAGGAAAGAATAAATGAGAAT
CTGATTCCCAGGTAGCGCTGAAGAGAGAGTGATGGGGTGGGGCTTGTAGGTGGATATTTTTCAA
AACCTACTTTGCTAAGGGTTCTTAAACACTTTAACTTCCCCTCTAGCCCACCGCCCGCCAGAGG
TAGTGGAAAGGAAGGATTAACAGGGCAAAGGAGGATGTGGGCTGTTTAGAAGCAGTTCTCTGGG
GCGATTCCCATCTTCTTTGTCAGGATATCAGCAGTTCAGTTCACAGGAATCATCGCTAGCTTAA
CCCACTTGCAAACACCACTCTCGAATCAGCAATGGCAGTTTGATTCAGAAGAAACCACCAGGCT
CTGTCAACTGGACTCAAGTCCAAGGAAAGGGCAAGAAGTCCCCAGAACACCATCAGAGTCCTTT
GGTGCGTTTCTCTCTATGAAGTCGTGACAAAGGATGATCAGCAAAGAGTGGCAGCATGCTGAAC
CAATGCCCATCATCGTCAATGAAGACCAGCAAAGAGTGGCAAGGCAGCTTCCAGAAAAACATGT
CTGTCTTCAGTCAAACAGCCTCCCACATGTCTGCTTCAGCAGAAACATCTTCTCGTAAGACAGT
TTCCAGAAAAACATCACATGACACAACCGAATCTCCAGATAAACCAGAAGTTTCCACTTCAGGG
ACTTAACTTCAGAGAGACGTGAGGCTGCCAAGTAAGACTGTATTGTTCCTGTGGGTATAGGCAC
AGAGGAACTCAGAGCTGGAATTCAAACTACACTAGGTGTGAGAAGAAGCTAAGGGGTCGAGAGT
GCATGCAAGACTTTTAATGGTCAGCCATGGACTTGAAGCTGAAAGGGTGTAGGAACATAGGATT
GGTGACCAAAGTGACCTGGAAGGGTCGTAGGTCTCCAAGACACCAGAGAAAGTGAAGGAGAAAA
GGAAATGATGGGCCCTGGGTCAGAATATGGTAGGCGGTGGACTCACCCCCACTCTGTAACAGAT
CTTCAGAAGGGGGCCTGGTGGAGGGTAGAGACGGAATGATCTGGGTGCTCAGAGGAGCAAGGAC
GCTACTACTGGTCTGGAAGGAGCAAGAGAGGACATAAGAGGAGACTTGGATTCTAAAATAAGTT
CAGGAAGAAAGTGACGAGATATATAGTAAATTCCAAGGCCCAAGTGGATGGCACAAGTCTGAAC
AGTATGGTTTTCCCCTCATTGTTGTTTGTAAAAGGTCTATGTGGGACAGGCTAAACTCAAATTC
TCCTGCCTCTGCTCCAGAGTGCTGTCATTACAGGCAGGCATGCACTCCACCACACCCTGCTGGG
ACTATATTAGACTTGGAGGGGGTCTTTGGCCCCGGAGGAACAGGTGTGCTCTATATCCTTGTCT
GCTGCCAGGCATCCTGACTAGGTCTGTGACCTTGGGAGGCTGACGCACCGACTCCACTTCACCC
AGAGGACACCGGCGTCAGGACATGGGAGCCCAGCCCTCGCGACGGCGGATGACCGAAGCTCAGC
ACATGGCTTTGGCCGAGCTGCCCCCGGAGTTGCTGCTGCAGGTGCTGAGCCATGTGCCTCCTCG
CGCGTTAGTGACCCGCTGCCGGCCGGTGTGCCGCGCCTGGCGCGACCTAGTAGATGGCCCAAGC
GTATGGCTGCTGCAACTGGCTCGCGACCGCAGCGCGGAGGGCAGAGCCCTCTACGCCTTGGCCC
AGAGCTGCCCGGCCGACCGCAACGGCCACGACGACTTCCCACTCTGTGCTCTGGCCCGCTTCTG
CCTGCTAGCGCCGCTTGGCCGCAACCTCATCTACAACTCCTGCGGAGAACAGGGCTTCAGAGGT
TGGGAAGTGGAACATGGCGGGAACGGCTGGGCTGTGGAAAAGAATCTGACGATGGTGCCAGGGG
CTCCTTCTCAAACCTGCTTCGTGACTTCTTTTGAGTGGTGCTTCAAGAGGCAGCTTGTAGACCT
GGTGAAGGAAGGAGTGTGGCAGGAGCTGCTGGACAGTGCCCAGATTGAGATCTACATAGCTGAC
TGGTGGGGCGCCCGTGAGAACTGCGGCTGCATCTACAGGCTTCGGGTCCGCCTACTGGACGAAC
ATGAAAACGAAGTGGTCAAGTTCTCTGCCTCACCCAACCCAGTCCTTCAGTGGACTGAGAGGAG
CTGCCGACAAGTCTCTCACGTCTTCACTGACTTTGGCAAGGGCATCCGCTATGTGTCCTTTGAG
CAGTATGGAAGAGACACTCGTTCCTGGGTGGGACACTATGGTGCCCTCGTGACCCACTCCACTG
TGCGGGTCAGGATCCGTCTGTCCTAGCTGACTGGCTTGACACACTGCCTTCTCCTGGATGGAAT
TAAAACCAAAGGTGGTTTTGCAGTCCCCAGCTGACAGCTATCTGGGGGGAAAAGGAGATCCTGG
GTGGCCCTCCTGCTGGGACAAACCAGGGACTACCAGCTTGTTCAGAGCCTCCGTCTCTCAAGCA
GGGACTACCATGAGGTGACGCAGTCATCTCTAGGTTGCTAAGCCTGAGACCCACTTCATGTGTG
GATCCCAGGGGGTAAACTGTTCAAAACAGCAGACCGAGCCGGACCTGACAGCACACACTTCTAG
TCCCAGCATTCTAGGTAGATGCAGGAGGGTTGGGAGTTCAAAGTCATCCTCAGCTACATGAGAG
CCTGTCAAAAACAAAACAAAAAAACAAACAAAAACATCCAACAAACCAAGCTTGGAATTATAAC
AAAA

hide sequence

RefSeq Acc Id:

XM_017588903 ⟹ XP_017444392

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	86,913,144 - 86,919,202 (+)	NCBI

Sequence:

show sequence

CCAGCAAAGAGTGGCAAGCTTCCAGAAAAACATGTCTGTCTTCAGTCAAACAGCCTCCCACATG
TCTGCTTCAGCAGAAACATCTTCTCGTAAGACAGTTTCCAGAAAAACATCACATGACACAACCG
AATCTCCAGATAAACCAGAAGTTTCCACTTCAGGGACTTAACTTCAGAGAGACGTGAGGCTGCC
AAGTAAGACTGTATTGTTCCTGTGGGTATAGGCACAGAGGAACTCAGAGCTGGAATTCAAACTA
CACTAGGTGTGAGAAGAAGCTAAGGGGTCGAGAGTGCATGCAAGACTTTTAATGGTCAGCCATG
GACTTGAAGCTGAAAGGGTGTAGGAACATAGGATTGGTGACCAAAGTGACCTGGAAGGGTCGTA
GGTCTCCAAGACACCAGAGAAAGTGAAGGAGAAAAGGAAATGATGGGCCCTGGGTCAGAATATG
GTAGGCGGTGGACTCACCCCCACTCTGTAACAGATCTTCAGAAGGGGGCCTGGTGGAGGGTAGA
GACGGAATGATCTGGGTGCTCAGAGGAGCAAGGACGCTACTACTGGTCTGGAAGGAGCAAGAGA
GGACATAAGAGGAGACTTGGATTCTAAAATAAGTTCAGGAAGAAAGTGACGAGATATATAGTAA
ATTCCAAGGCCCAAGTGGATGGCACAAGTCTGAACAGTATGGTTTTCCCCTCATTGTTGTTTGT
AAAAGGTCTATGTGGGACAGGCTAAACTCAAATTCTCCTGCCTCTGCTCCAGAGTGCTGTCATT
ACAGGCAGGCATGCACTCCACCACACCCTGCTGGGACTATATTAGACTTGGAGGGGGTCTTTGG
CCCCGGAGGAACAGGTGTGCTCTATATCCTTGTCTGCTGCCAGGCATCCTGACTAGGTCTGTGA
CCTTGGGAGGCTGACGCACCGACTCCACTTCACCCAGAGGACACCGGCGTCAGGACATGGGAGC
CCAGCCCTCGCGACGGCGGATGACCGAAGCTCAGCACATGGCTTTGGCCGAGCTGCCCCCGGAG
TTGCTGCTGCAGGTGCTGAGCCATGTGCCTCCTCGCGCGTTAGTGACCCGCTGCCGGCCGGTGT
GCCGCGCCTGGCGCGACCTAGTAGATGGCCCAAGCGTATGGCTGCTGCAACTGGCTCGCGACCG
CAGCGCGGAGGGCAGAGCCCTCTACGCCTTGGCCCAGAGCTGCCCGGCCGACCGCAACGGCCAC
GACGACTTCCCACTCTGTGCTCTGGCCCGCTTCTGCCTGCTAGCGCCGCTTGGCCGCAACCTCA
TCTACAACTCCTGCGGAGAACAGGGCTTCAGAGGTTGGGAAGTGGAACATGGCGGGAACGGCTG
GGCTGTGGAAAAGAATCTGACGATGGTGCCAGGGGCTCCTTCTCAAACCTGCTTCGTGACTTCT
TTTGAGTGGTGCTTCAAGAGGCAGCTTGTAGACCTGGTGAAGGAAGGAGTGTGGCAGGAGCTGC
TGGACAGTGCCCAGATTGAGATCTACATAGCTGACTGGTGGGGCGCCCGTGAGAACTGCGGCTG
CATCTACAGGCTTCGGGTCCGCCTACTGGACGAACATGAAAACGAAGTGGTCAAGTTCTCTGCC
TCACCCAACCCAGTCCTTCAGTGGACTGAGAGGAGCTGCCGACAAGTCTCTCACGTCTTCACTG
ACTTTGGCAAGGGCATCCGCTATGTGTCCTTTGAGCAGTATGGAAGAGACACTCGTTCCTGGGT
GGGACACTATGGTGCCCTCGTGACCCACTCCACTGTGCGGGTCAGGATCCGTCTGTCCTAGCTG
ACTGGCTTGACACACTGCCTTCTCCTGGATGGAATTAAAACCAAAGGTGGTTTTGCAGTCCCCA
GCTGACAGCTATCTGGGGGGAAAAGGAGATCCTGGGTGGCCCTCCTGCTGGGACAAACCAGGGA
CTACCAGCTTGTTCAGAGCCTCCGTCTCTCAAGCAGGGACTACCATGAGGTGACGCAGTCATCT
CTAGGTTGCTAAGCCTGAGACCCACTTCATGTGTGGATCCCAGGGGGTAAACTGTTCAAAACAG
CAGACCGAGCCGGACCTGACAGCACACACTTCTAGTCCCAGCATTCTAGGTAGATGCAGGAGGG
TTGGGAGTTCAAAGTCATCCTCAGCTACATGAGAGCCTGTCAAAAACAAAACAAAAAAACAAAC
AAAAACATCCAACAAACCAAGCTTGGAATTATAACAAAA

hide sequence

RefSeq Acc Id:

XM_017588904 ⟹ XP_017444393

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	86,908,971 - 86,919,202 (+)	NCBI

Sequence:

show sequence

GAAAAAAAATGGATTTAGAGTGGGAGGACAAAGATAGATGGTTGCATAACTAATGATTTTGTTT
TCTTTTGGTGCTCTGGGAACTAATTGGGCTCAGCCTACTCAGGGGTCCTATATCTCATCTATAA
GACGGAAGAGGAGGCTGGGTCACCTCATAATGGCTTCTGCATTGCTGCACGTGCTGGGAATGCT
AAAAGAGCTGACCCATCCCTGCTGTCTTCAGCACACTGCCCCCAAGTGGCCAGCTGCAATGACA
GCAGCTGACTCGGGCAAGGATGTGCTTGCAAGGCTCAAGCGATAAACTGCCTGCATTGATTTCC
GACCTGGCAGCGCTGGGGCCTCAGCTGGGCAGTACGGTTGTGTGATTCACACCCCAGGCAGCAA
CCAAGGCTATAAACATCAGTCTGCCCACCCACCCCCGTCCTAGCCAGTTGTTAACTACTTAGCA
ACGCTCTAGGACTCCTGAGAGGGATCGTGACTCTACAGGGAGACAGAGACATTTTTAGACTGCC
ACCTGGAAAATCCCTTGGCAGTGCCACTTCTCCAGTGACAGAGGCCTTGTGACTTGCAGGATTA
TGGAGCCACGTGTTAGATAGGAAGTACCATCGTAGTCCTTTTTGGAATGTACAGTCATAGGTCC
TTGCAGATGGAATGTTAGCAGCATCCCTGGTTACCATGCCAACCAAAGATAACCAACCAACAAA
CATGCAAGCTCAGACTCTTACCAGTAGCCGAGTATCTGATTTCCCCCACCCAAACTGGTCTCAG
CCAGTGATTGGCATTTAGCCTCCAGACTGTGGGAGTGAGGTACCATGCACATCCCCACAGAGGG
GCCTGGAGTTCCTACATGCAGCAGACAGGTTTCAAGCTTTGCTTGGCTCAGCCTTGTGCCCCCT
CCCTCTACTTCTTTTTCCTCTCCATCTCCCTTTCTTGAGGTTCCAACCAGGGCATCATGCAAAT
GAGGAAAAAGCTTTTCCTCCTGGCCCAGTCTCTCAGGGACCCAGCCCAATAGGAAGGAAGCACA
GAGCCAGGAGATGGCGGTGGTGCAGTCGAGAGCCAATGAGACCTAAGGTTCAAAGATCATCTCT
GACAGGCCATCAGAGCAGCCACCAAACGAGGCATCCTGACTAGGTCTGTGACCTTGGGAGGCTG
ACGCACCGACTCCACTTCACCCAGAGGACACCGGCGTCAGGACATGGGAGCCCAGCCCTCGCGA
CGGCGGATGACCGAAGCTCAGCACATGGCTTTGGCCGAGCTGCCCCCGGAGTTGCTGCTGCAGG
TGCTGAGCCATGTGCCTCCTCGCGCGTTAGTGACCCGCTGCCGGCCGGTGTGCCGCGCCTGGCG
CGACCTAGTAGATGGCCCAAGCGTATGGCTGCTGCAACTGGCTCGCGACCGCAGCGCGGAGGGC
AGAGCCCTCTACGCCTTGGCCCAGAGCTGCCCGGCCGACCGCAACGGCCACGACGACTTCCCAC
TCTGTGCTCTGGCCCGCTTCTGCCTGCTAGCGCCGCTTGGCCGCAACCTCATCTACAACTCCTG
CGGAGAACAGGGCTTCAGAGGTTGGGAAGTGGAACATGGCGGGAACGGCTGGGCTGTGGAAAAG
AATCTGACGATGGTGCCAGGGGCTCCTTCTCAAACCTGCTTCGTGACTTCTTTTGAGTGGTGCT
TCAAGAGGCAGCTTGTAGACCTGGTGAAGGAAGGAGTGTGGCAGGAGCTGCTGGACAGTGCCCA
GATTGAGATCTACATAGCTGACTGGTGGGGCGCCCGTGAGAACTGCGGCTGCATCTACAGGCTT
CGGGTCCGCCTACTGGACGAACATGAAAACGAAGTGGTCAAGTTCTCTGCCTCACCCAACCCAG
TCCTTCAGTGGACTGAGAGGAGCTGCCGACAAGTCTCTCACGTCTTCACTGACTTTGGCAAGGG
CATCCGCTATGTGTCCTTTGAGCAGTATGGAAGAGACACTCGTTCCTGGGTGGGACACTATGGT
GCCCTCGTGACCCACTCCACTGTGCGGGTCAGGATCCGTCTGTCCTAGCTGACTGGCTTGACAC
ACTGCCTTCTCCTGGATGGAATTAAAACCAAAGGTGGTTTTGCAGTCCCCAGCTGACAGCTATC
TGGGGGGAAAAGGAGATCCTGGGTGGCCCTCCTGCTGGGACAAACCAGGGACTACCAGCTTGTT
CAGAGCCTCCGTCTCTCAAGCAGGGACTACCATGAGGTGACGCAGTCATCTCTAGGTTGCTAAG
CCTGAGACCCACTTCATGTGTGGATCCCAGGGGGTAAACTGTTCAAAACAGCAGACCGAGCCGG
ACCTGACAGCACACACTTCTAGTCCCAGCATTCTAGGTAGATGCAGGAGGGTTGGGAGTTCAAA
GTCATCCTCAGCTACATGAGAGCCTGTCAAAAACAAAACAAAAAAACAAACAAAAACATCCAAC
AAACCAAGCTTGGAATTATAACAAAA

hide sequence

RefSeq Acc Id:

XM_017588905 ⟹ XP_017444394

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	86,913,434 - 86,919,202 (+)	NCBI

Sequence:

show sequence

ACTTCAGAGAGACGCATCCTGACTAGGTCTGTGACCTTGGGAGGCTGACGCACCGACTCCACTT
CACCCAGAGGACACCGGCGTCAGGACATGGGAGCCCAGCCCTCGCGACGGCGGATGACCGAAGC
TCAGCACATGGCTTTGGCCGAGCTGCCCCCGGAGTTGCTGCTGCAGGTGCTGAGCCATGTGCCT
CCTCGCGCGTTAGTGACCCGCTGCCGGCCGGTGTGCCGCGCCTGGCGCGACCTAGTAGATGGCC
CAAGCGTATGGCTGCTGCAACTGGCTCGCGACCGCAGCGCGGAGGGCAGAGCCCTCTACGCCTT
GGCCCAGAGCTGCCCGGCCGACCGCAACGGCCACGACGACTTCCCACTCTGTGCTCTGGCCCGC
TTCTGCCTGCTAGCGCCGCTTGGCCGCAACCTCATCTACAACTCCTGCGGAGAACAGGGCTTCA
GAGGTTGGGAAGTGGAACATGGCGGGAACGGCTGGGCTGTGGAAAAGAATCTGACGATGGTGCC
AGGGGCTCCTTCTCAAACCTGCTTCGTGACTTCTTTTGAGTGGTGCTTCAAGAGGCAGCTTGTA
GACCTGGTGAAGGAAGGAGTGTGGCAGGAGCTGCTGGACAGTGCCCAGATTGAGATCTACATAG
CTGACTGGTGGGGCGCCCGTGAGAACTGCGGCTGCATCTACAGGCTTCGGGTCCGCCTACTGGA
CGAACATGAAAACGAAGTGGTCAAGTTCTCTGCCTCACCCAACCCAGTCCTTCAGTGGACTGAG
AGGAGCTGCCGACAAGTCTCTCACGTCTTCACTGACTTTGGCAAGGGCATCCGCTATGTGTCCT
TTGAGCAGTATGGAAGAGACACTCGTTCCTGGGTGGGACACTATGGTGCCCTCGTGACCCACTC
CACTGTGCGGGTCAGGATCCGTCTGTCCTAGCTGACTGGCTTGACACACTGCCTTCTCCTGGAT
GGAATTAAAACCAAAGGTGGTTTTGCAGTCCCCAGCTGACAGCTATCTGGGGGGAAAAGGAGAT
CCTGGGTGGCCCTCCTGCTGGGACAAACCAGGGACTACCAGCTTGTTCAGAGCCTCCGTCTCTC
AAGCAGGGACTACCATGAGGTGACGCAGTCATCTCTAGGTTGCTAAGCCTGAGACCCACTTCAT
GTGTGGATCCCAGGGGGTAAACTGTTCAAAACAGCAGACCGAGCCGGACCTGACAGCACACACT
TCTAGTCCCAGCATTCTAGGTAGATGCAGGAGGGTTGGGAGTTCAAAGTCATCCTCAGCTACAT
GAGAGCCTGTCAAAAACAAAACAAAAAAACAAACAAAAACATCCAACAAACCAAGCTTGGAATT
ATAACAAAA

hide sequence

RefSeq Acc Id:

XM_017588906 ⟹ XP_017444395

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	86,913,180 - 86,918,737 (+)	NCBI

Sequence:

show sequence

CATCGTCCACTGTCTGTTGGATTATATTTATACCCTTTCCAAACATCCCATGTTCTCTCGTGTG
TCTGCTCTAGCAAAATATCAAATGCCCTTTTCCCAGGCAGCTTCCAGAAAAACATGTCTGTCTT
CAGTCAAACAGCCTCCCACATGTCTGCTTCAGCAGAAACATCTTCTCGTAAGACAGTTTCCAGA
AAAACATCACATGACACAACCGAATCTCCAGATAAACCAGAAGTTTCCACTTCAGGGACTTAAC
TTCAGAGAGACGTGAGGCTGCCAAGTAAGACTGTATTGTTCCTGTGGGTATAGGCACAGAGGAA
CTCAGAGCTGGAATTCAAACTACACTAGGTGTGAGAAGAAGCTAAGGGGTCGAGAGTGCATGCA
AGACTTTTAATGGTCAGCCATGGACTTGAAGCTGAAAGGGTGTAGGAACATAGGATTGGTGACC
AAAGTGACCTGGAAGGGTCGTAGGTCTCCAAGACACCAGAGAAAGTGAAGGAGAAAAGGAAATG
ATGGGCCCTGGGTCAGAATATGGTAGGCGGTGGACTCACCCCCACTCTGTAACAGATCTTCAGA
AGGGGGCCTGGTGGAGGGTAGAGACGGAATGATCTGGGTGCTCAGAGGAGCAAGGACGCTACTA
CTGGTCTGGAAGGAGCAAGAGAGGACATAAGAGGAGACTTGGATTCTAAAATAAGTTCAGGAAG
AAAGTGACGAGATATATAGTAAATTCCAAGGCCCAAGTGGATGGCACAAGTCTGAACAGTATGG
TTTTCCCCTCATTGTTGTTTGTAAAAGGTCTATGTGGGACAGGCTAAACTCAAATTCTCCTGCC
TCTGCTCCAGAGTGCTGTCATTACAGGCAGGCATGCACTCCACCACACCCTGCTGGGACTATAT
TAGACTTGGAGGGGGTCTTTGGCCCCGGAGGAACAGGTGTGCTCTATATCCTTGTCTGCTGCCA
GGCATCCTGACTAGGTCTGTGACCTTGGGAGGCTGACGCACCGACTCCACTTCACCCAGAGGAC
ACCGGCGTCAGGACATGGGAGCCCAGCCCTCGCGACGGCGGATGACCGAAGCTCAGCACATGGC
TTTGGCCGAGCTGCCCCCGGAGTTGCTGCTGCAGGTGCTGAGCCATGTGCCTCCTCGCGCGTTA
GTGACCCGCTGCCGGCCGGTGTGCCGCGCCTGGCGCGACCTAGTAGATGGCCCAAGCGTATGGC
TGCTGCAACTGGCTCGCGACCGCAGCGCGGAGGGCAGAGCCCTCTACGCCTTGGCCCAGAGCTG
CCCGGCCGACCGCAACGGCCACGACGACTTCCCACTCTGTGCTCTGGCCCGCTTCTGCCTGCTA
GCGCCGCTTGGCCGCAACCTCATCTACAACTCCTGCGGAGAACAGGGCTTCAGAGGTTGGGAAG
TGGAACATGGCGGGAACGGCTGGGCTGTGGAAAAGAATCTGACGATGGTGCCAGGGGCTCCTTC
TCAAACCTGCTTCGTGACTTCTTTTGAGTGGTGCTTCAAGAGGCAGCTTGTAGACCTGGTGAAG
GAAGGAGTGTGGCAGGAGCTGCTGGACAGTGCCCAGATTGAGATCTACATAGCTGACTGGTGGG
GCGCCCGTGAGAACTGCGGCTGCATCTACAGGCTTCGGGTCCGCCTACTGGACGAACATGAAAA
CGAAGTGGTCAAGTTCTCTGCCTCACCCAACCCAGTCCTTCAGTGGACTGAGAGGAGCTGCCGA
CAAGTGAGTCCGGACTGCTCACTCAACCCTGGCCTGCTCCAAGGTCTCTCACGTCTTCACTGAC
TTTGGCAAGGGCATCCGCTATGTGTCCTTTGAGCAGTATGGAAGAGACACTCGTTCCTGGGTGG
GACACTATGGTGCCCTCGTG

hide sequence

RefSeq Acc Id:

XM_017588907 ⟹ XP_017444396

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	86,903,762 - 86,919,238 (+)	NCBI

Sequence:

show sequence

AGCCTACATCTTCTAAAGGTTCCCTGGGACTGGAGAAATAGCCAAGTGATTTAGAACATGGGCG
GCTCCTCTAGAGGACCCAGGTTCAACTTCCGGTACCTACATGGCCGCTCACAACCATTTCTAAT
TCCAGTCCTGGGGTTATGTCGCCCTCTTCTGGCCTCACAGGTATTTACTCAAGAGAATGCAGCC
TATGCCCACATAGACCTTCATGCATGAACACACTCACAGCGGCTTCATTCCTAGCAGCTCCAAA
TGGGAGACAACTCAAGCGTCCATCAAGGCATCCTGACTAGGTCTGTGACCTTGGGAGGCTGACG
CACCGACTCCACTTCACCCAGAGGACACCGGCGTCAGGACATGGGAGCCCAGCCCTCGCGACGG
CGGATGACCGAAGCTCAGCACATGGCTTTGGCCGAGCTGCCCCCGGAGTTGCTGCTGCAGGTGC
TGAGCCATGTGCCTCCTCGCGCGTTAGTGACCCGCTGCCGGCCGGTGTGCCGCGCCTGGCGCGA
CCTAGTAGATGGCCCAAGCGTATGGCTGCTGCAACTGGCTCGCGACCGCAGCGCGGAGGGCAGA
GCCCTCTACGCCTTGGCCCAGAGCTGCCCGGCCGACCGCAACGGCCACGACGACTTCCCACTCT
GTGCTCTGGCCCGCTTCTGCCTGCTAGCGCCGCTTGGCCGCAACCTCATCTACAACTCCTGCGG
AGAACAGGGCTTCAGAGGTTGGGAAGTGGAACATGGCGGGAACGGCTGGGCTGTGGAAAAGAAT
CTGACGATGGTGCCAGGGGCTCCTTCTCAAACCTGCTTCGTGACTTCTTTTGAGTGGTGCTTCA
AGAGGCAGCTTGTAGACCTGGTGAAGGAAGGAGTGTGGCAGGAGCTGCTGGACAGTGCCCAGAT
TGAGATCTACATAGCTGACTGGTGGGGCGCCCGTGAGAACTGCGGCTGCATCTACAGGCTTCGG
GTCCGCCTACTGGACGAACATGAAAACGAAGTGGTCAAGTTCTCTGCCTCACCCAACCCAGTCC
TTCAGTGGACTGAGAGGAGCTGCCGACAAGTGAGTCCGGACTGCTCACTCAACCCTGGCCTGCT
CCAAGGTCTCTCACGTCTTCACTGACTTTGGCAAGGGCATCCGCTATGTGTCCTTTGAGCAGTA
TGGAAGAGACACTCGTTCCTGGGTGGGACACTATGGTGCCCTCGTGACCCACTCCACTGTGCGG
GTCAGGATCCGTCTGTCCTAGCTGACTGGCTTGACACACTGCCTTCTCCTGGATGGAATTAAAA
CCAAAGGTGGTTTTGCAGTCCCCAGCTGACAGCTATCTGGGGGGAAAAGGAGATCCTGGGTGGC
CCTCCTGCTGGGACAAACCAGGGACTACCAGCTTGTTCAGAGCCTCCGTCTCTCAAGCAGGGAC
TACCATGAGGTGACGCAGTCATCTCTAGGTTGCTAAGCCTGAGACCCACTTCATGTGTGGATCC
CAGGGGGTAAACTGTTCAAAACAGCAGACCGAGCCGGACCTGACAGCACACACTTCTAGTCCCA
GCATTCTAGGTAGATGCAGGAGGGTTGGGAGTTCAAAGTCATCCTCAGCTACATGAGAGCCTGT
CAAAAACAAAACAAAAAAACAAACAAAAACATCCAACAAACCAAGCTTGGAATTATAACAAAAG
GCTACTTAAAAGAATACAGTGACAAAATTTTTTAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001013082	(Get FASTA)	NCBI Sequence Viewer
	XP_017444390	(Get FASTA)	NCBI Sequence Viewer
	XP_017444391	(Get FASTA)	NCBI Sequence Viewer
	XP_017444392	(Get FASTA)	NCBI Sequence Viewer
	XP_017444393	(Get FASTA)	NCBI Sequence Viewer
	XP_017444394	(Get FASTA)	NCBI Sequence Viewer
	XP_017444395	(Get FASTA)	NCBI Sequence Viewer
	XP_017444396	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79218	(Get FASTA)	NCBI Sequence Viewer
	Q6AY27	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001013082 ⟸ NM_001013064

- UniProtKB:

Q6AY27 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MGAQPSRRRMTEAQHMALAELPPELLLQVLSHVPPRALVTRCRPVCRAWRDLVDGPSVWLLQLA
RDRSAEGRALYALAQSCPADRNGHDDFPLCALARFCLLAPLGRNLIYNSCGEQGFRGWEVEHGG
NGWAVEKNLTMVPGAPSQTCFVTSFEWCFKRQLVDLVKEGVWQELLDSAQIEIYIADWWGAREN
CGCIYRLRVRLLDEHENEVVKFSASPNPVLQWTERSCRQVSHVFTDFGKGIRYVSFEQYGRDTR
SWVGHYGALVTHSTVRVRIRLS

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RefSeq Acc Id:	XP_017444396 ⟸ XM_017588907
- Peptide Label:	isoform X2
- UniProtKB:	Q6AY27 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGAQPSRRRMTEAQHMALAELPPELLLQVLSHVPPRALVTRCRPVCRAWRDLVDGPSVWLLQLA RDRSAEGRALYALAQSCPADRNGHDDFPLCALARFCLLAPLGRNLIYNSCGEQGFRGWEVEHGG NGWAVEKNLTMVPGAPSQTCFVTSFEWCFKRQLVDLVKEGVWQELLDSAQIEIYIADWWGAREN CGCIYRLRVRLLDEHENEVVKFSASPNPVLQWTERSCRQVSPDCSLNPGLLQGLSRLH hide sequence

RefSeq Acc Id:

XP_017444393 ⟸ XM_017588904

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGAQPSRRRMTEAQHMALAELPPELLLQVLSHVPPRALVTRCRPVCRAWRDLVDGPSVWLLQLA
RDRSAEGRALYALAQSCPADRNGHDDFPLCALARFCLLAPLGRNLIYNSCGEQGFRGWEVEHGG
NGWAVEKNLTMVPGAPSQTCFVTSFEWCFKRQLVDLVKEGVWQELLDSAQIEIYIADWWGAREN
CGCIYRLRVRLLDEHENEVVKFSASPNPVLQWTERSCRQVSHVFTDFGKGIRYVSFEQYGRDTR
SWVGHYGALVTHSTVRVRIRLS

hide sequence

RefSeq Acc Id:

XP_017444391 ⟸ XM_017588902

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGAQPSRRRMTEAQHMALAELPPELLLQVLSHVPPRALVTRCRPVCRAWRDLVDGPSVWLLQLA
RDRSAEGRALYALAQSCPADRNGHDDFPLCALARFCLLAPLGRNLIYNSCGEQGFRGWEVEHGG
NGWAVEKNLTMVPGAPSQTCFVTSFEWCFKRQLVDLVKEGVWQELLDSAQIEIYIADWWGAREN
CGCIYRLRVRLLDEHENEVVKFSASPNPVLQWTERSCRQVSHVFTDFGKGIRYVSFEQYGRDTR
SWVGHYGALVTHSTVRVRIRLS

hide sequence

RefSeq Acc Id:

XP_017444392 ⟸ XM_017588903

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGAQPSRRRMTEAQHMALAELPPELLLQVLSHVPPRALVTRCRPVCRAWRDLVDGPSVWLLQLA
RDRSAEGRALYALAQSCPADRNGHDDFPLCALARFCLLAPLGRNLIYNSCGEQGFRGWEVEHGG
NGWAVEKNLTMVPGAPSQTCFVTSFEWCFKRQLVDLVKEGVWQELLDSAQIEIYIADWWGAREN
CGCIYRLRVRLLDEHENEVVKFSASPNPVLQWTERSCRQVSHVFTDFGKGIRYVSFEQYGRDTR
SWVGHYGALVTHSTVRVRIRLS

hide sequence

RefSeq Acc Id:	XP_017444395 ⟸ XM_017588906
- Peptide Label:	isoform X2
- UniProtKB:	Q6AY27 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGAQPSRRRMTEAQHMALAELPPELLLQVLSHVPPRALVTRCRPVCRAWRDLVDGPSVWLLQLA RDRSAEGRALYALAQSCPADRNGHDDFPLCALARFCLLAPLGRNLIYNSCGEQGFRGWEVEHGG NGWAVEKNLTMVPGAPSQTCFVTSFEWCFKRQLVDLVKEGVWQELLDSAQIEIYIADWWGAREN CGCIYRLRVRLLDEHENEVVKFSASPNPVLQWTERSCRQVSPDCSLNPGLLQGLSRLH hide sequence

RefSeq Acc Id:

XP_017444390 ⟸ XM_017588901

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGAQPSRRRMTEAQHMALAELPPELLLQVLSHVPPRALVTRCRPVCRAWRDLVDGPSVWLLQLA
RDRSAEGRALYALAQSCPADRNGHDDFPLCALARFCLLAPLGRNLIYNSCGEQGFRGWEVEHGG
NGWAVEKNLTMVPGAPSQTCFVTSFEWCFKRQLVDLVKEGVWQELLDSAQIEIYIADWWGAREN
CGCIYRLRVRLLDEHENEVVKFSASPNPVLQWTERSCRQVSHVFTDFGKGIRYVSFEQYGRDTR
SWVGHYGALVTHSTVRVRIRLS

hide sequence

RefSeq Acc Id:

XP_017444394 ⟸ XM_017588905

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGAQPSRRRMTEAQHMALAELPPELLLQVLSHVPPRALVTRCRPVCRAWRDLVDGPSVWLLQLA
RDRSAEGRALYALAQSCPADRNGHDDFPLCALARFCLLAPLGRNLIYNSCGEQGFRGWEVEHGG
NGWAVEKNLTMVPGAPSQTCFVTSFEWCFKRQLVDLVKEGVWQELLDSAQIEIYIADWWGAREN
CGCIYRLRVRLLDEHENEVVKFSASPNPVLQWTERSCRQVSHVFTDFGKGIRYVSFEQYGRDTR
SWVGHYGALVTHSTVRVRIRLS

hide sequence

RefSeq Acc Id:

ENSRNOP00000027006 ⟸ ENSRNOT00000027006

Protein Domains

F-box FBA

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
1	88095477	88095478	G	A	snv	SDLEF7/Barth (UDEL)
1	88099883	88099884	T	G	snv	GK/Ox (KNAW)

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
1	86918751	86918752	T	G	snv	GK/Ox (RGD)

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
1	83843232	83843233	T	G	snv	GK/Ox (ICL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308308	AgrOrtholog
Ensembl Genes	ENSRNOG00000019942	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000027006	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000027006	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	2.60.120.260	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7131902	IMAGE-MGC_LOAD
InterPro	F-box-assoc_dom	UniProtKB/Swiss-Prot
	F-box-like_dom_sf	UniProtKB/Swiss-Prot
	F-box_dom	UniProtKB/Swiss-Prot
	F-box_only	UniProtKB/Swiss-Prot
	Galactose-bd-like_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:292757	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94281	IMAGE-MGC_LOAD
NCBI Gene	292757	ENTREZGENE
PANTHER	PTHR12125	UniProtKB/Swiss-Prot
Pfam	F-box-like	UniProtKB/Swiss-Prot
	FBA	UniProtKB/Swiss-Prot
PhenoGen	Fbxo17	PhenoGen
PROSITE	FBA	UniProtKB/Swiss-Prot
	FBOX	UniProtKB/Swiss-Prot
SMART	FBA	UniProtKB/Swiss-Prot
	FBOX	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF49785	UniProtKB/Swiss-Prot
	SSF81383	UniProtKB/Swiss-Prot
UniGene	Rn.53606	ENTREZGENE
UniProt	FBX17_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Fbxo17	F-box protein 17	Fbxo17	F-box only protein 17	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Fbxo17	F-box only protein 17	Fbxo17_predicted	F-box only protein 17 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Fbxo17_predicted	F-box only protein 17 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)