FBXO17 (F-box protein 17) - Rat Genome Database

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Gene: FBXO17 (F-box protein 17) Canis lupus familiaris
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Symbol: FBXO17
Name: F-box protein 17
RGD ID: 12127548
Description: INVOLVED IN protein ubiquitination (inferred); FOUND IN SCF ubiquitin ligase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: F-box only protein 17; LOW QUALITY PROTEIN: F-box only protein 17
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11114,161,226 - 114,188,354 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1114,161,051 - 114,188,356 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1113,562,792 - 113,590,778 (+)NCBI
ROS_Cfam_1.01114,760,868 - 114,788,221 (+)NCBI
UMICH_Zoey_3.11114,318,765 - 114,346,749 (+)NCBI
UNSW_CanFamBas_1.01113,951,952 - 113,979,923 (+)NCBI
UU_Cfam_GSD_1.01114,947,660 - 114,975,657 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
FBXO17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11114,161,226 - 114,188,354 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1114,161,051 - 114,188,356 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1113,562,792 - 113,590,778 (+)NCBI
ROS_Cfam_1.01114,760,868 - 114,788,221 (+)NCBI
UMICH_Zoey_3.11114,318,765 - 114,346,749 (+)NCBI
UNSW_CanFamBas_1.01113,951,952 - 113,979,923 (+)NCBI
UU_Cfam_GSD_1.01114,947,660 - 114,975,657 (+)NCBI
FBXO17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1938,941,401 - 38,975,742 (-)EnsemblGRCh38hg38GRCh38
GRCh381938,941,401 - 38,975,742 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371939,432,041 - 39,466,382 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361944,123,882 - 44,158,220 (-)NCBINCBI36hg18NCBI36
Celera1936,234,470 - 36,268,805 (-)NCBI
Cytogenetic Map19q13.2NCBI
HuRef1935,878,641 - 35,912,924 (-)NCBIHuRef
CHM1_11939,432,437 - 39,466,836 (-)NCBICHM1_1
Fbxo17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39728,416,176 - 28,437,570 (+)NCBIGRCm39mm39
GRCm39 Ensembl728,416,229 - 28,437,569 (+)Ensembl
GRCm38728,716,749 - 28,738,145 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl728,716,804 - 28,738,144 (+)EnsemblGRCm38mm10GRCm38
MGSCv37729,501,809 - 29,523,163 (+)NCBIGRCm37mm9NCBIm37
MGSCv36728,425,633 - 28,446,904 (+)NCBImm8
Celera723,285,120 - 23,298,551 (+)NCBICelera
Cytogenetic Map7B1NCBI
Fbxo17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2184,002,276 - 84,024,455 (+)NCBI
Rnor_6.0 Ensembl186,914,137 - 86,919,236 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0186,903,762 - 86,919,238 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0188,084,918 - 88,100,373 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4183,828,307 - 83,843,719 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1183,906,417 - 83,921,828 (+)NCBI
Celera178,401,477 - 78,416,889 (+)NCBICelera
Cytogenetic Map1q21NCBI
Fbxo17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955468591,650 - 598,544 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955468591,653 - 598,370 (+)NCBIChiLan1.0ChiLan1.0
FBXO17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11944,590,799 - 44,624,871 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1944,590,799 - 44,624,871 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01936,041,892 - 36,075,757 (-)NCBIMhudiblu_PPA_v0panPan3
LOC101974318
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934913,448,060 - 13,482,064 (-)NCBI
SpeTri2.0NW_0049366611,876,129 - 1,904,964 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl647,732,303 - 47,759,606 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1647,733,064 - 47,759,646 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2643,280,735 - 43,326,470 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FBXO17
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1633,555,689 - 33,590,776 (-)NCBI
ChlSab1.1 Ensembl633,555,240 - 33,590,723 (-)Ensembl
Fbxo17
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479412,275,383 - 12,303,527 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 8
Low 5 3 18 6 5 6 6 12 10 3
Below cutoff 2 4 6 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000009044   ⟹   ENSCAFP00000008388
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1114,161,051 - 114,188,356 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000046387   ⟹   ENSCAFP00000037266
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1114,181,976 - 114,187,208 (+)Ensembl
RefSeq Acc Id: XM_022425826   ⟹   XP_022281534
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11114,161,226 - 114,188,354 (+)NCBI
Dog10K_Boxer_Tasha1113,562,792 - 113,589,997 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038468203   ⟹   XP_038324131
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11114,318,765 - 114,345,968 (+)NCBI
RefSeq Acc Id: XM_038528960   ⟹   XP_038384888
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01114,947,660 - 114,974,876 (+)NCBI
RefSeq Acc Id: XM_038593234   ⟹   XP_038449162
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01113,951,952 - 113,979,142 (+)NCBI
RefSeq Acc Id: XM_038657060   ⟹   XP_038512988
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01114,760,868 - 114,788,221 (+)NCBI
RefSeq Acc Id: XR_005310172
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1113,562,792 - 113,590,778 (+)NCBI
RefSeq Acc Id: XR_005321031
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11114,318,765 - 114,346,749 (+)NCBI
RefSeq Acc Id: XR_005354645
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01114,947,660 - 114,975,657 (+)NCBI
RefSeq Acc Id: XR_005389217
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01113,951,952 - 113,979,923 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_022281534   ⟸   XM_022425826
- Sequence:
RefSeq Acc Id: ENSCAFP00000008388   ⟸   ENSCAFT00000009044
RefSeq Acc Id: ENSCAFP00000037266   ⟸   ENSCAFT00000046387
RefSeq Acc Id: XP_038324131   ⟸   XM_038468203
RefSeq Acc Id: XP_038449162   ⟸   XM_038593234
RefSeq Acc Id: XP_038512988   ⟸   XM_038657060
RefSeq Acc Id: XP_038384888   ⟸   XM_038528960
Protein Domains
FBA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000005622 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000008388 UniProtKB/TrEMBL
  ENSCAFP00000037266 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000009044 UniProtKB/TrEMBL
  ENSCAFT00000046387 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.260 UniProtKB/TrEMBL
InterPro F-box-assoc_dom UniProtKB/TrEMBL
  F-box_only UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
NCBI Gene FBXO17 ENTREZGENE
PANTHER PTHR12125 UniProtKB/TrEMBL
Pfam FBA UniProtKB/TrEMBL
PROSITE FBA UniProtKB/TrEMBL
SMART FBA UniProtKB/TrEMBL
Superfamily-SCOP SSF49785 UniProtKB/TrEMBL
UniProt E2RE11_CANLF UniProtKB/TrEMBL
  J9NVS4_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:40764 ENTREZGENE