Il18 (interleukin 18) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Il18 (interleukin 18) Rattus norvegicus
Analyze
Symbol: Il18
Name: interleukin 18
RGD ID: 2889
Description: Predicted to enable cytokine activity and interleukin-18 receptor binding activity. Involved in several processes, including cellular response to hormone stimulus; positive regulation of cell population proliferation; and positive regulation of cytokine production. Located in apical plasma membrane; cytoplasm; and extracellular space. Used to study brain edema; fatty liver disease; heart disease; status epilepticus; and vasculitis. Biomarker of several diseases, including cardiac arrest; ischemia (multiple); lung disease (multiple); perinatal necrotizing enterocolitis; and urinary tract infection. Human ortholog(s) of this gene implicated in several diseases, including Kawasaki disease; allergic rhinitis; autoimmune disease (multiple); biliary atresia; and hepatitis B. Orthologous to human IL18 (interleukin 18); PARTICIPATES IN interleukin-12 signaling pathway; interleukin-23 signaling pathway; interleukin-27 signaling pathway; INTERACTS WITH (R)-mevalonic acid; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: IFN-gamma-inducing factor; IL-1 gamma; IL-18; interferon gamma-inducing factor; interferon-gamma-inducing factor; interleukin-1 gamma; interleukin-18
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2850,904,630 - 50,932,887 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl850,906,960 - 50,932,887 (+)Ensembl
Rnor_6.0855,009,666 - 55,016,286 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl854,993,859 - 55,016,299 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0853,606,988 - 53,613,608 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4853,936,584 - 53,943,228 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1853,955,637 - 53,962,282 (+)NCBI
Celera850,474,845 - 50,479,055 (+)NCBICelera
Cytogenetic Map8q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
acute kidney failure  (ISO)
Acute Lung Injury  (IEP)
alcoholic hepatitis  (ISO)
allergic contact dermatitis  (ISO)
allergic disease  (ISO)
allergic rhinitis  (ISO)
alopecia areata  (ISO)
anti-basement membrane glomerulonephritis  (ISO)
asthma  (ISO)
atherosclerosis  (IEP,ISO)
atopic dermatitis  (ISO,ISS)
autoimmune hepatitis  (ISO)
autoimmune thrombocytopenic purpura  (ISO)
bacterial pneumonia  (ISO)
Behcet's disease  (ISO)
biliary atresia  (ISO)
brain edema  (IDA)
Brain Injuries  (IMP,ISO)
brain ischemia  (IEP,ISO)
breast cancer  (ISO)
Bronchial Hyperreactivity  (ISO)
Burns  (ISO)
calcinosis  (ISO)
Carcinoma, Lewis Lung  (ISO)
cardiac arrest  (IEP)
Cardiomegaly  (ISO)
Carotid Artery Injuries  (IEP,IMP)
cataract  (IEP)
cerebral infarction  (IEP)
Chemical and Drug Induced Liver Injury  (ISO)
Chronic Hepatitis B  (ISO)
Chronic Hepatitis C  (ISO)
chronic obstructive pulmonary disease  (ISO)
contact dermatitis  (ISO)
Coronary Disease  (ISO)
COVID-19  (ISO)
cutaneous T cell lymphoma  (ISO)
cystic fibrosis  (ISO)
cystitis  (IEP)
dermatitis  (ISO)
dermatomyositis  (ISO)
diabetic retinopathy  (ISO)
disease of cellular proliferation  (ISO)
Drug Eruptions  (ISO)
Eczema  (ISO)
Edema  (IMP)
Embryo Loss  (IEP)
Experimental Arthritis  (IEP,IMP)
Experimental Autoimmune Encephalomyelitis  (IEP,IMP)
Experimental Liver Cirrhosis  (ISO)
Experimental Melanoma  (ISO)
eye disease  (ISO)
familial Mediterranean fever  (ISO)
fatty liver disease  (IDA)
glomerulonephritis  (ISO)
Graves Ophthalmopathy  (ISO)
Graves' disease  (ISO)
heart disease  (IMP)
heart valve disease  (ISO)
hemophagocytic lymphohistiocytosis  (ISO)
Hemorrhagic Shock  (ISO)
hepatitis B  (ISO)
hepatitis C  (ISO)
hepatocellular carcinoma  (ISO)
herpes simplex  (ISO)
high grade glioma  (ISO)
HIV-Associated Lipodystrophy Syndrome  (ISO)
human immunodeficiency virus infectious disease  (ISO)
Human Influenza  (ISO)
Hyperalgesia  (IMP)
Hyperoxia  (IDA)
Hyperphagia  (ISO)
IgA glomerulonephritis  (ISO)
Immediate Hypersensitivity  (ISO)
Insulin Resistance  (ISO)
intellectual disability  (ISO)
interstitial lung disease  (IEP,ISO)
intrahepatic cholestasis of pregnancy  (ISO)
invasive ductal carcinoma  (ISO)
ischemia  (IEP)
Kawasaki disease  (ISO)
Kidney Reperfusion Injury  (IMP)
Legionnaires' disease  (ISO)
leishmaniasis  (ISO)
liver cirrhosis  (ISO)
Liver Failure  (IEP)
Liver Injury  (IEP,ISO)
Liver Reperfusion Injury  (IEP,ISO)
lung disease  (ISO)
lung non-small cell carcinoma  (ISO)
lupus nephritis  (ISO)
Lymphatic Metastasis  (ISO)
Macrophage Activation Syndrome  (ISO)
Metabolic Syndrome  (IEP,ISO)
Mouth Neoplasms  (ISO)
Myocardial Reperfusion Injury  (IDA,ISO)
myositis  (ISO)
Neoplasm Metastasis  (ISO)
neuroblastoma  (ISO)
non-alcoholic fatty liver disease  (IEP,ISO)
Nontuberculous Mycobacterium Infections  (ISO)
obesity  (IEP,ISO)
Oral Lichen Planus  (ISO)
Pain  (IDA)
pancreatitis  (IEP)
paracoccidioidomycosis  (ISO)
Perennial Allergic Rhinitis  (ISO)
perinatal necrotizing enterocolitis  (IEP,ISO)
Peripheral Nerve Injuries  (IEP)
Pneumococcal Pneumonia  (ISO)
pneumonia  (IEP,ISO)
polymyositis  (ISO)
Polyomavirus Infections  (ISO)
Prostatic Neoplasms  (ISO)
Pseudomonas Aeruginosa Keratitis  (ISO)
psoriasis  (ISO)
pulmonary edema  (ISO)
pulmonary emphysema  (IEP,ISO)
pulmonary fibrosis  (ISO)
pulmonary hypertension  (ISO)
pulmonary sarcoidosis  (ISO)
pulmonary tuberculosis  (ISO)
Radiation Injuries, Experimental  (ISO)
Reperfusion Injury  (ISO)
respiratory failure  (ISO)
respiratory syncytial virus infectious disease  (ISO)
Retinal Neovascularization  (ISO)
rheumatoid arthritis  (ISO)
rhinitis  (ISO)
sarcoidosis  (ISO)
Schistosomiasis Japonica  (ISO)
Seasonal Allergic Rhinitis  (ISO)
severe acute respiratory syndrome  (ISO)
Sjogren's syndrome  (ISO)
sleep apnea  (ISO)
Spinal Cord Injuries  (IDA,IEP)
Staphylococcal Skin Infections  (ISO)
status epilepticus  (IDA)
Stroke  (IEP)
strongyloidiasis  (ISO)
temporal arteritis  (ISO)
Tibial Fractures  (IEP)
Transplant Rejection  (IMP)
type 1 diabetes mellitus  (ISO)
urinary tract infection  (IEP)
urticaria  (ISO)
uveitis  (IEP)
vasculitis  (IDA)
Venous Thrombosis  (IEP)
visceral leishmaniasis  (ISO)
Wallerian Degeneration  (IEP)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(4-oxo-3-\{[5-(trifluoromethyl)-1,3-benzothiazol-2-yl]methyl\}-3,4-dihydrophthalazin-1-yl)acetic acid  (ISO)
(E)-cinnamyl alcohol  (ISO)
(R)-mevalonic acid  (EXP)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-benzothiazole-2-thiol  (ISO)
1,4-phenylenediamine  (ISO)
1-chloro-2,4,6-trinitrobenzene  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP,ISO)
2-amino-2-deoxy-D-galactopyranose  (EXP,ISO)
2-bromo-2-(bromomethyl)pentanedinitrile  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3-chloropropane-1,2-diol  (EXP)
3-methyladenine  (ISO)
3-methylcholanthrene  (ISO)
3-phenylprop-2-enal  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-methylhistamine  (ISO)
4-nitrobenzyl bromide  (ISO)
4-phenylbutyric acid  (ISO)
5-(1,4-diazepane-1-sulfonyl)isoquinoline  (EXP)
5-fluorouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
8-Br-cAMP  (ISO)
8-chloro-2'-deoxyguanosine  (ISO)
acetamide  (EXP)
acetylsalicylic acid  (ISO)
aconitine  (EXP,ISO)
acrolein  (ISO)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
aldosterone  (EXP)
alendronic acid  (ISO)
all-trans-retinoic acid  (ISO)
allopurinol  (EXP)
aluminium sulfate (anhydrous)  (ISO)
amiodarone  (ISO)
ammonium chloride  (EXP)
amphibole asbestos  (EXP,ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
anthranilic acid  (ISO)
antirheumatic drug  (ISO)
apocynin  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
asperentin  (ISO)
ATP  (ISO)
atrazine  (ISO)
benzalkonium chloride  (ISO)
benzo[a]pyrene  (ISO)
benzocaine  (ISO)
benzylpenicillin  (ISO)
Bergenin  (EXP)
beryllium sulfate  (ISO)
bexarotene  (EXP)
bezafibrate  (EXP)
bilirubin IXalpha  (ISO)
biliverdin  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
BQ 123  (EXP)
butyric acid  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon monoxide  (ISO)
carbon nanotube  (ISO)
carbonyl cyanide p-trifluoromethoxyphenylhydrazone  (ISO)
cefaloridine  (EXP)
celastrol  (EXP)
cerium trichloride  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cimetidine  (ISO)
cinnamyl alcohol  (ISO)
cisplatin  (ISO)
citral  (ISO)
clenbuterol  (ISO)
clofibrate  (ISO)
cobalt atom  (EXP,ISO)
cobalt dichloride  (EXP,ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
Curcumol  (ISO)
cycloheximide  (EXP)
cyclophosphamide  (EXP)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
dextran sulfate  (EXP,ISO)
diarsenic trioxide  (ISO)
dibenziodolium  (ISO)
dichlorine  (EXP)
dicrotophos  (ISO)
dieckol  (ISO)
dieldrin  (EXP)
diethyl malate  (ISO)
diethyl maleate  (ISO)
diethylamine  (ISO)
dihydroartemisinin  (ISO)
Dimaprit  (ISO)
dioxygen  (EXP)
disodium selenite  (EXP)
eplerenone  (EXP)
ethanol  (ISO)
eugenol  (ISO)
famotidine  (ISO)
fasudil hydrochloride  (EXP)
felodipine  (EXP)
ferulic acid  (ISO)
folic acid  (ISO)
folpet  (ISO)
formaldehyde  (ISO)
fructose  (EXP)
fulvestrant  (ISO)
furan  (ISO)
genistein  (EXP)
gentamycin  (ISO)
geranial  (ISO)
geraniol  (ISO)
glyburide  (EXP,ISO)
glyoxal  (ISO)
graphene oxide  (ISO)
graphite  (EXP)
hemin  (ISO)
hexachlorobenzene  (EXP)
histamine  (ISO)
Honokiol  (ISO)
hydrocortisone succinate  (ISO)
hydrogen peroxide  (ISO)
IC-87114  (ISO)
ICI 118551  (ISO)
imiquimod  (ISO)
immunological adjuvant  (ISO)
indometacin  (EXP)
irinotecan  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
isoeugenol  (ISO)
isoprenaline  (EXP,ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
lipid As  (ISO)
lipopolysaccharide  (EXP,ISO)
lonafarnib  (ISO)
lovastatin  (ISO)
lucanthone  (ISO)
LY294002  (ISO)
m-xylene  (EXP)
manganese(II) chloride  (ISO)
mangiferin  (EXP)
Manumycin A  (ISO)
melittin  (ISO)
metam  (ISO)
methamphetamine  (ISO)
methotrexate  (ISO)
methoxyacetic acid  (ISO)
mifepristone  (ISO)
mitomycin C  (ISO)
Monobutylphthalate  (ISO)
monocrotaline  (ISO)
muramyl dipeptide  (ISO)
mycophenolic acid  (ISO)
mycotoxin  (ISO)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (ISO)
N-acetyl-L-cysteine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodimethylamine  (EXP,ISO)
N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine  (ISO)
nickel atom  (EXP,ISO)
nickel dichloride  (EXP,ISO)
nickel sulfate  (ISO)
nicotinamide  (EXP)
nifuroxazide  (EXP)
nilotinib  (ISO)
nitrofen  (EXP)
NMN zwitterion  (EXP,ISO)
ochratoxin A  (ISO)
olmesartan  (EXP)
oxaliplatin  (EXP)
ozone  (EXP,ISO)
paclitaxel  (ISO)
Palbinone  (EXP)
pamidronate  (ISO)
paracetamol  (ISO)
paraquat  (EXP,ISO)
PD 0325901  (ISO)
pentane-2,3-dione  (EXP)
permethrin  (ISO)
phenethyl caffeate  (ISO)
phenytoin  (ISO)
phosgene  (EXP)
phthalic anhydride  (ISO)
pioglitazone  (EXP)
pirinixic acid  (ISO)
prednisolone  (ISO)
procyanidin B2  (EXP)
progesterone  (ISO)
protein kinase inhibitor  (ISO)
Pyridostigmine bromide  (ISO)
pyrrolidine dithiocarbamate  (ISO)
quartz  (EXP)
quercetin  (EXP)
rac-lactic acid  (ISO)
ranitidine  (ISO)
reactive oxygen species  (ISO)
Rebamipide  (EXP)
reserpine  (EXP)
resorcinol  (ISO)
resveratrol  (EXP,ISO)
rifampicin  (ISO)
rolipram  (ISO)
rotenone  (EXP,ISO)
rutin  (EXP)
sarpogrelate  (ISO)
SB 203580  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (EXP,ISO)
silver atom  (ISO)
silver(0)  (ISO)
simvastatin  (EXP,ISO)
sirolimus  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP)
Soman  (EXP)
spironolactone  (EXP)
sterigmatocystin  (ISO)
streptozocin  (EXP)
sulfamic acid  (ISO)
sulfur dioxide  (EXP)
tetrachloromethane  (ISO)
thalidomide  (ISO)
thapsigargin  (ISO)
theophylline  (ISO)
thiram  (ISO)
tipifarnib  (ISO)
titanium dioxide  (ISO)
toluene 2,4-diisocyanate  (ISO)
topotecan  (EXP)
trans-isoeugenol  (ISO)
trichostatin A  (ISO)
Triptolide  (ISO)
trovafloxacin  (ISO)
tungsten  (EXP)
uranium atom  (ISO)
usnic acid  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
wortmannin  (ISO)
zearalenone  (ISO)
zinc protoporphyrin  (ISO)
zirconium atom  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
activation of protein kinase B activity  (IEA,ISO)
angiogenesis  (IEA,ISO,ISS)
cell population proliferation  (IEA,ISO)
cellular response to cAMP  (IEP)
cellular response to hydrogen peroxide  (IEP)
cellular response to interferon-gamma  (IEP)
cellular response to lipopolysaccharide  (IEP)
cellular response to mechanical stimulus  (IEP)
cellular response to organic cyclic compound  (IEA,ISO)
cellular response to parathyroid hormone stimulus  (IEP)
cellular response to peptide hormone stimulus  (IMP)
cellular response to tumor necrosis factor  (IEP)
cholesterol homeostasis  (IEA,ISO)
detection of mechanical stimulus involved in sensory perception of pain  (IDA)
digestive tract morphogenesis  (IEP)
extrinsic apoptotic signaling pathway via death domain receptors  (ISO)
inflammatory response  (IEA,ISO)
interleukin-18-mediated signaling pathway  (IEA,ISO,ISS)
learning or memory  (TAS)
lipopolysaccharide-mediated signaling pathway  (IEA,ISO)
liver regeneration  (IEP)
lung development  (IEP)
MAPK cascade  (IEA,ISO)
natural killer cell activation  (IEA,ISO)
natural killer cell mediated cytotoxicity  (IEA,ISO)
negative regulation of myoblast differentiation  (IEA,ISO)
negative regulation of neutrophil apoptotic process  (IMP)
negative regulation of peptidyl-tyrosine phosphorylation  (IMP)
neutrophil activation  (IEA,ISO)
osteoblast differentiation  (IEP)
positive regulation of activated T cell proliferation  (IEA,ISO,ISS)
positive regulation of apoptotic process  (IMP)
positive regulation of blood vessel remodeling  (IDA)
positive regulation of cell population proliferation  (ISO)
positive regulation of chemokine production  (IMP)
positive regulation of cold-induced thermogenesis  (ISO,ISS)
positive regulation of collagen biosynthetic process  (IDA)
positive regulation of gene expression  (ISO)
positive regulation of granulocyte macrophage colony-stimulating factor production  (IEA,ISO)
positive regulation of hepatocyte proliferation  (IDA)
positive regulation of interferon-gamma production  (IEA,ISO,ISS)
positive regulation of interleukin-1 beta production  (IEP)
positive regulation of interleukin-17 production  (IEA,ISO)
positive regulation of interleukin-8 production  (IDA)
positive regulation of macrophage derived foam cell differentiation  (IEA,ISO)
positive regulation of male germ cell proliferation  (IDA)
positive regulation of natural killer cell proliferation  (IEA,ISO)
positive regulation of neuron apoptotic process  (IMP)
positive regulation of NF-kappaB transcription factor activity  (IEA,ISO,ISS)
positive regulation of NIK/NF-kappaB signaling  (IEA,ISO)
positive regulation of NK T cell proliferation  (IEA,ISO)
positive regulation of phosphatidylinositol 3-kinase signaling  (IEA,ISO)
positive regulation of protein kinase B signaling  (IEA,ISO)
positive regulation of smooth muscle cell migration  (IMP)
positive regulation of smooth muscle cell proliferation  (IEA,IMP,ISO)
positive regulation of superoxide anion generation  (IMP)
positive regulation of T-helper 1 cell cytokine production  (IEA,ISO,ISS)
positive regulation of T-helper 2 cell differentiation  (IEA,ISO)
positive regulation of transcription by RNA polymerase II  (IEA,ISO)
positive regulation of tumor necrosis factor production  (IMP)
positive regulation of tyrosine phosphorylation of STAT protein  (IEA,ISO)
positive regulation of vascular permeability  (IMP)
regulation of cell adhesion  (ISO,ISS)
regulation of circadian sleep/wake cycle, non-REM sleep  (TAS)
response to cold  (IEP)
response to hyperoxia  (IEP)
response to hypoxia  (IMP)
response to peptide hormone  (IEP)
response to radiation  (IEP)
sleep  (IDA,TAS)
T-helper 1 type immune response  (IEA,ISO,ISS)
triglyceride homeostasis  (IEA,ISO)

Cellular Component

Molecular Function

References

References - curated
1. Akgun M, etal., Respirology. 2005 Jun;10(3):295-9.
2. Akhtar S, etal., Am J Physiol Gastrointest Liver Physiol. 2009 Aug;297(2):G340-7. Epub 2009 Jun 4.
3. Akhtar S, etal., Mol Med. 2011 Jan-Feb;17(1-2):88-94. doi: 10.2119/molmed.2010.00080. Epub 2010 Sep 10.
4. Altinova AE, etal., Cytokine. 2008 May;42(2):217-21. doi: 10.1016/j.cyto.2008.02.006. Epub 2008 Mar 24.
5. Alves ABRM, etal., Med Mycol. 2018 Apr 1;56(3):332-343. doi: 10.1093/mmy/myx050.
6. An P, etal., J Infect Dis. 2008 Oct 15;198(8):1159-65. doi: 10.1086/592047.
7. Ando M and Shima M, J Investig Allergol Clin Immunol. 2007;17(1):14-9.
8. Antoniou KM, etal., J Interferon Cytokine Res. 2006 Jun;26(6):400-5.
9. Bai J, etal., Tissue Antigens. 2007 Nov;70(5):390-7. Epub 2007 Sep 14.
10. Bakr NM, etal., IUBMB Life. 2018 Feb;70(2):165-174. doi: 10.1002/iub.1714. Epub 2018 Jan 17.
11. Baldini C, etal., J Intern Med. 2013 Nov;274(5):480-9. doi: 10.1111/joim.12115. Epub 2013 Aug 17.
12. Blease K, etal., Inflamm Res. 2001 Nov;50(11):552-60.
13. Borai IH, etal., J Clin Transl Hepatol. 2017 Jun 28;5(2):109-118. doi: 10.14218/JCTH.2017.00004. Epub 2017 Jun 7.
14. Brieland JK, etal., Infect Immun. 2000 Dec;68(12):6567-73.
15. Callaway CW, etal., Crit Care Med. 2008 Sep;36(9):2607-12.
16. Cardenas S, etal., Am J Physiol Lung Cell Mol Physiol. 2010 Sep;299(3):L334-44. Epub 2010 Jun 11.
17. Castelar L, etal., Tissue Antigens. 2010 Aug;76(2):126-30. doi: 10.1111/j.1399-0039.2010.01471.x. Epub 2010 Mar 14.
18. Chandrasekar B, etal., Biochem Biophys Res Commun. 2003 Apr 18;303(4):1152-8.
19. Chattergoon MA, etal., J Infect Dis. 2011 Dec 1;204(11):1730-40. doi: 10.1093/infdis/jir642. Epub 2011 Oct 7.
20. Chen S, etal., Tissue Antigens. 2010 Sep;76(3):245-9.
21. Chen SY, etal., J Clin Lab Anal. 2009;23(2):71-6. doi: 10.1002/jcla.20292.
22. Cheong JY, etal., Dig Dis Sci. 2010 Apr;55(4):1113-9. doi: 10.1007/s10620-009-0819-z. Epub 2009 May 23.
23. Chooklin S Hepatobiliary Pancreat Dis Int. 2009 Apr;8(2):186-92.
24. Conti B, etal., J Biol Chem 1997 Jan 24;272(4):2035-7.
25. Daigo E, etal., Neurosci Lett. 2012 Oct 31;529(1):39-44. doi: 10.1016/j.neulet.2012.09.007. Epub 2012 Sep 18.
26. de Rivero Vaccari JP, etal., J Neurosci. 2008 Mar 26;28(13):3404-14.
27. Ecelbarger CM, etal., Mediators Inflamm. 2010;2010:841343. Epub 2010 May 17.
28. Fan CY, etal., J Nutr Biochem. 2014 Mar;25(3):353-62. doi: 10.1016/j.jnutbio.2013.11.010. Epub 2013 Dec 4.
29. Fraser DD, etal., Crit Care Explor. 2020 Jun 22;2(6):e0144. doi: 10.1097/CCE.0000000000000144. eCollection 2020 Jun.
30. Fujioka N, etal., J Virol. 1999 Mar;73(3):2401-9.
31. GOA data from the GO Consortium
32. Gono T, etal., Rheumatology (Oxford). 2010 Oct;49(10):1878-81. Epub 2010 Jul 3.
33. Gunel N, etal., Am J Clin Oncol. 2003 Aug;26(4):416-21.
34. Gunel N, etal., Cancer. 2002 Aug 1;95(3):663-7.
35. Haas SL, etal., J Clin Immunol. 2009 Sep;29(5):620-8. doi: 10.1007/s10875-009-9302-z. Epub 2009 May 20.
36. Halpern MD, etal., Am J Physiol Gastrointest Liver Physiol. 2003 Apr;284(4):G695-702. Epub 2003 Jan 15.
37. Halpern MD, etal., Am J Physiol Gastrointest Liver Physiol. 2008 Jan;294(1):G20-6. Epub 2007 Oct 18.
38. Halpern MD, etal., Pediatr Res 2002 Jun;51(6):733-9.
39. Hamzaoui A, etal., Clin Exp Rheumatol. 2003 Jul-Aug;21(4 Suppl 30):S8-14.
40. Harada M, etal., Am J Respir Crit Care Med. 2009 Dec 1;180(11):1048-55. Epub 2009 Sep 10.
41. Harker JA, etal., J Virol. 2010 Apr;84(8):4073-82. Epub 2010 Feb 3.
42. Haznedaroglu S, etal., Clin Exp Rheumatol. 2005 Jul-Aug;23(4 Suppl 38):S77-80.
43. Hedtjarn M, etal., J Neurosci 2002 Jul 15;22(14):5910-9.
44. Hoshino T, etal., Am J Respir Cell Mol Biol. 2009 Dec;41(6):661-70. Epub 2009 Mar 5.
45. Hoshino T, etal., Am J Respir Crit Care Med. 2007 Jul 1;176(1):49-62. Epub 2007 Mar 30.
46. Hsueh KC, etal., J Rheumatol. 2008 Jul;35(7):1408-13. Epub 2008 May 15.
47. Htoon J, etal., J Rheumatol. 2011 May;38(5):962-3. doi: 10.3899/jrheum.101202.
48. Hu JZ, etal., J Neurol Sci. 2013 Jan 15;324(1-2):94-9. doi: 10.1016/j.jns.2012.10.009. Epub 2012 Nov 7.
49. Huang KJ, etal., J Med Virol. 2005 Feb;75(2):185-94. doi: 10.1002/jmv.20255.
50. Huang X, etal., J Immunol. 2002 Jun 1;168(11):5756-63.
51. Ibrahim GH, etal., Am J Rhinol Allergy. 2012 Sep-Oct;26(5):385-9. doi: 10.2500/ajra.2012.26.3806. Epub 2012 Jul 27.
52. Im SH, etal., J Interferon Cytokine Res 2002 Mar;22(3):321-8.
53. Imboden M, etal., Clin Exp Allergy. 2006 Feb;36(2):211-8.
54. Imran M, etal., Viral Immunol. 2014 Oct;27(8):404-11. doi: 10.1089/vim.2014.0044. Epub 2014 Sep 8.
55. Ino Y, etal., Clin Cancer Res. 2006 Jan 15;12(2):643-52.
56. Jander S and Stoll G, J Neuroimmunol. 1998 Nov 2;91(1-2):93-9.
57. Jander S, etal., J Cereb Blood Flow Metab. 2002 Jan;22(1):62-70.
58. Jang WC, etal., Clin Exp Rheumatol. 2005 Jul-Aug;23(4 Suppl 38):S59-63.
59. Jordan JA, etal., J Immunol 2001 Dec 15;167(12):7060-8.
60. Jung HK, etal., Brain Res. 2012 Apr 4;1447:126-34. Epub 2012 Jan 31.
61. Kalariya NM, etal., Invest Ophthalmol Vis Sci. 2012 Jun 8;53(7):3431-40. doi: 10.1167/iovs.12-9432.
62. Kawase Y, etal., J Invest Dermatol. 2003 Sep;121(3):502-9.
63. Kempster SL, etal., Am J Physiol Gastrointest Liver Physiol. 2010 Nov 18.
64. Khalili-Azad T, etal., Neoplasma. 2009;56(1):22-5.
65. Kieszko R, etal., Respir Med. 2007 Apr;101(4):722-8. Epub 2006 Oct 2.
66. Kim E, etal., Clin Exp Allergy. 2007 Jun;37(6):865-71.
67. Kim SH, etal., Br J Dermatol. 2011 Nov;165(5):976-84. doi: 10.1111/j.1365-2133.2011.10467.x. Epub 2011 Sep 15.
68. Kim SK, etal., J Interferon Cytokine Res. 2014 May;34(5):349-53. doi: 10.1089/jir.2013.0055. Epub 2014 Jan 21.
69. Kim SW, etal., Ann Otol Rhinol Laryngol. 2007 Jan;116(1):76-80.
70. Kimura K, etal., J Leukoc Biol. 2011 Mar;89(3):433-42. doi: 10.1189/jlb.0710412. Epub 2010 Nov 24.
71. Kinoshita M, etal., Infect Immun. 2011 Jul;79(7):2670-80. doi: 10.1128/IAI.01298-10. Epub 2011 May 2.
72. Kitasato Y, etal., Am J Respir Cell Mol Biol. 2004 Dec;31(6):619-25. Epub 2004 Aug 12.
73. Kolinska J, etal., J Interferon Cytokine Res. 2008 May;28(5):287-96.
74. Kratzer A, etal., Am J Respir Cell Mol Biol. 2013 Jun;48(6):725-32. doi: 10.1165/rcmb.2012-0173OC.
75. Kruse S, etal., J Allergy Clin Immunol. 2003 Jan;111(1):117-22.
76. Kubota T, etal., Am J Physiol Regul Integr Comp Physiol. 2001 Sep;281(3):R828-38.
77. Kuroda-Morimoto M, etal., Int Immunol. 2010 Jul;22(7):561-70. Epub 2010 May 23.
78. Lau HK, etal., Int J Med Sci. 2016 Jul 5;13(7):556-61. doi: 10.7150/ijms.15853. eCollection 2016.
79. Lee CC, etal., J Clin Lab Anal. 2008;22(1):39-44.
80. Lee HM, etal., Int J Pediatr Otorhinolaryngol. 2006 Jun;70(6):1085-8. Epub 2006 Jan 6.
81. Lee YJ, etal., Hum Immunol. 2006 Oct;67(10):812-8. Epub 2006 Aug 23.
82. Leu S, etal., J Transl Med. 2010 Jun 28;8:63. doi: 10.1186/1479-5876-8-63.
83. Li C, etal., Arch Ophthalmol. 2007 Jun;125(6):795-803.
84. Li C, etal., Chin Med J (Engl). 2009 Jan 5;122(1):24-9.
85. Li WW, etal., Pain. 2009 Dec 15;147(1-3):277-86. Epub 2009 Oct 22.
86. Li X, etal., Biochim Biophys Acta. 2012 Feb;1822(2):196-203. doi: 10.1016/j.bbadis.2011.09.019. Epub 2011 Oct 7.
87. Li Y, etal., Hepatogastroenterology. 2010 Jan-Feb;57(97):103-6.
88. Lian H, etal., Cancer Immunol Immunother. 2007 Feb;56(2):181-92. Epub 2006 Jun 10.
89. Liang J, etal., Gene. 2018 Nov 30;677:228-231. doi: 10.1016/j.gene.2018.07.071. Epub 2018 Jul 27.
90. Lichtnekert J, etal., PLoS One. 2011;6(10):e26778. Epub 2011 Oct 27.
91. Lim A, etal., Dis Markers. 2010;29(2):103-9.
92. Lin X, etal., Lin Chuang Er Bi Yan Hou Ke Za Zhi. 2005 Mar;19(5):195-7.
93. Lindegaard B, etal., AIDS. 2004 Sep 24;18(14):1956-8.
94. Lissoni P, etal., J Biol Regul Homeost Agents. 2000 Oct-Dec;14(4):275-7.
95. Liu X, etal., Transplantation. 2015 Oct;99(10):2109-17. doi: 10.1097/TP.0000000000000737.
96. Ludwiczek O, etal., J Clin Immunol. 2002 Nov;22(6):331-7.
97. Machura E, etal., Biomed Res Int. 2013;2013:605262. doi: 10.1155/2013/605262. Epub 2013 Dec 29.
98. Maffia P, etal., Circulation. 2006 Aug 1;114(5):430-7. Epub 2006 Jul 24.
99. Markowitz GJ, etal., Cancer Res. 2016 Apr 15;76(8):2394-405. doi: 10.1158/0008-5472.CAN-15-1548. Epub 2016 Feb 18.
100. Melnikov VY, etal., J Clin Invest. 2001 May;107(9):1145-52.
101. Menge T, etal., J Neurosci Res. 2001 Aug 15;65(4):332-9.
102. Menke J, etal., Kidney Int. 2011 Feb;79(4):452-63. Epub 2010 Oct 27.
103. MGD data from the GO Consortium
104. Micallef MJ, etal., Eur J Immunol. 1996 Jul;26(7):1647-51.
105. Miyauchi S, etal., Endocr J. 2013;60(4):449-55. Epub 2012 Dec 19.
106. Miyoshi K, etal., J Neurosci. 2008 Nov 26;28(48):12775-87. doi: 10.1523/JNEUROSCI.3512-08.2008.
107. Mo J, etal., J Cardiovasc Surg (Torino). 2012 Oct;53(5):625-30. Epub 2012 Feb 8.
108. Morel JC, etal., J Biol Chem. 2001 Oct 5;276(40):37069-75. Epub 2001 Jul 27.
109. Mukai T, etal., Thyroid. 2006 Mar;16(3):243-8.
110. Mullen AB, etal., Immunology. 2006 Nov;119(3):348-54. Epub 2006 Jul 26.
111. Mysliwiec J, etal., Int Immunopharmacol. 2003 Apr;3(4):549-52.
112. Nagai H, etal., J Invest Dermatol. 2002 Sep;119(3):541-8.
113. Nagai N, etal., Curr Eye Res. 2011 Jun;36(6):497-506. doi: 10.3109/02713683.2010.549602.
114. Nagai N, etal., J Biochem. 2007 Nov;142(5):597-603.
115. Naka T, etal., Prep Biochem Biotechnol. 2008;38(2):201-12.
116. NCBI rat LocusLink and RefSeq merged data July 26, 2002
117. Netea MG, etal., Nat Med. 2006 Jun;12(6):650-6. doi: 10.1038/nm1415. Epub 2006 May 28.
118. Nomura Y, etal., Int Arch Allergy Immunol. 2004 Oct;135(2):161-5. Epub 2004 Sep 2.
119. Novak N, etal., J Allergy Clin Immunol. 2005 Apr;115(4):828-33.
120. Ohkusu K, etal., Infect Immun. 2000 May;68(5):2449-56.
121. Oku H, etal., Eur J Pharmacol. 2008 Aug 20;590(1-3):400-8. Epub 2008 Jun 16.
122. Ono S, etal., J Surg Res. 2012 Jul;176(1):293-300. doi: 10.1016/j.jss.2011.07.053. Epub 2011 Aug 27.
123. Otulakowski G, etal., Am J Respir Cell Mol Biol. 2009 May;40(5):555-67. Epub 2008 Oct 23.
124. Palomino-Morales RJ, etal., Arthritis Res Ther. 2010;12(2):R51. doi: 10.1186/ar2962. Epub 2010 Mar 23.
125. Park CC, etal., J Immunol. 2001 Aug 1;167(3):1644-53.
126. Paterson GK, etal., J Med Microbiol. 2005 Apr;54(Pt 4):323-6.
127. Pawlik A, etal., Tissue Antigens. 2007 Oct;70(4):314-8.
128. Pazos P, etal., Sci Rep. 2015 Dec 10;5:17977. doi: 10.1038/srep17977.
129. Pietrzak A, etal., Mediators Inflamm. 2007;2007:61254.
130. Pipeline to import KEGG annotations from KEGG into RGD
131. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
132. Plitz T, etal., J Immunol. 2003 Aug 1;171(3):1164-71.
133. Puthothu B, etal., Pediatr Infect Dis J. 2007 Dec;26(12):1094-8.
134. Qiao H, etal., J Leukoc Biol. 2007 Apr;81(4):1012-21. Epub 2007 Jan 18.
135. Raggatt LJ, etal., J Biol Chem. 2008 Mar 14;283(11):6790-8. Epub 2007 Dec 28.
136. Rasmy H, etal., Arch Med Sci. 2011 Aug;7(4):713-9. doi: 10.5114/aoms.2011.24144. Epub 2011 Sep 2.
137. Reeves EP, etal., J Immunol. 2010 Feb 1;184(3):1642-52. Epub 2009 Dec 21.
138. Reyes L, etal., BMC Infect Dis. 2009 Jan 26;9:9.
139. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
140. RGD automated import pipeline for gene-chemical interactions
141. Rovina N, etal., Respir Med. 2009 Jul;103(7):1056-62. Epub 2009 Feb 8.
142. Ryu HJ, etal., Neuroscience. 2010 Oct 27;170(3):711-21. Epub 2010 Jul 29.
143. Santos KN, etal., Arq Gastroenterol. 2015 Jul-Sep;52(3):222-7. doi: 10.1590/S0004-28032015000300013.
144. Sasaki Y, etal., J Exp Med. 2005 Sep 5;202(5):607-16. Epub 2005 Aug 29.
145. Segawa S, etal., Am J Respir Cell Mol Biol. 2011 Jan 21.
146. Sekine K, etal., Shock. 2009 Nov;32(5):554-62.
147. Shao PL, etal., Cardiology. 2010;115(2):130-44. Epub 2009 Dec 2.
148. Shao Y, etal., Cell Physiol Biochem. 2017;42(4):1294-1302. doi: 10.1159/000478958. Epub 2017 Jul 11.
149. Sharma A, etal., Immunology. 2009 Sep;128(1 Suppl):e514-22. doi: 10.1111/j.1365-2567.2008.03021.x. Epub 2008 Nov 24.
150. Shi B, etal., Mediators Inflamm. 2012;2012:728417. Epub 2012 Feb 6.
151. Shimizu M, etal., Rheumatology (Oxford). 2010 Sep;49(9):1645-53. doi: 10.1093/rheumatology/keq133. Epub 2010 May 14.
152. Sifringer M, etal., Dev Neurosci. 2009;31(5):394-402. Epub 2009 Aug 11.
153. Sifringer M, etal., Neurobiol Dis. 2007 Mar;25(3):614-22. Epub 2006 Dec 22.
154. Skopinski P, etal., J Diabetes Complications. 2005 Nov-Dec;19(6):335-8.
155. Smaldone MC, etal., Urology. 2009 Feb;73(2):421-6. Epub 2008 Oct 9.
156. Sohn MH, etal., Allergy Asthma Proc. 2004 May-Jun;25(3):181-4.
157. Spahr L, etal., Liver Int. 2004 Dec;24(6):582-7. doi: 10.1111/j.1478-3231.2004.0967.x.
158. Srabovic N, etal., Med Glas (Zenica). 2011 Feb;8(1):109-15.
159. Stolina M, etal., Biomarkers. 2008 Nov;13(7):692-712.
160. Strand ML, etal., Mol Cell Endocrinol. 2005 Aug 30;240(1-2):64-73.
161. Sugama S, etal., Brain Res 2002 Dec 20;958(1):1-9.
162. Sugama S, etal., J Immunol. 2000 Dec 1;165(11):6287-92.
163. Sun Q, etal., J Biol Chem. 2013 May 31;288(22):15947-58. doi: 10.1074/jbc.M112.426791. Epub 2013 Apr 15.
164. Takeuchi D, etal., Hepatology. 2004 Mar;39(3):699-710. doi: 10.1002/hep.20117.
165. Takeuchi D, etal., J Surg Res. 2010 Jan;158(1):87-93. Epub .
166. Takiyama Y, etal., Thyroid. 2002 Nov;12(11):935-43.
167. Tan HW, etal., Atherosclerosis. 2010 Feb;208(2):350-7. Epub 2009 Aug 7.
168. Tanaka H, etal., J Allergy Clin Immunol. 2001 Feb;107(2):331-6.
169. Tanaka T, etal., Int Arch Allergy Immunol. 2001 Jul;125(3):236-40.
170. Tucci M, etal., Clin Exp Immunol. 2006 Oct;146(1):21-31.
171. Urushihara N, etal., J Pediatr Surg. 2000 Mar;35(3):446-9.
172. Valente AJ, etal., Am J Physiol Heart Circ Physiol. 2012 Aug 1;303(3):H282-96. doi: 10.1152/ajpheart.00231.2012. Epub 2012 May 25.
173. Van Der Sluijs KF, etal., Immunology. 2005 Jan;114(1):112-20.
174. Veenhuis RT, etal., Clin Infect Dis. 2017 Mar 1;64(5):589-596. doi: 10.1093/cid/ciw771. Epub 2016 Dec 7.
175. Venkatachalam K, etal., J Biol Chem. 2009 Mar 20;284(12):7853-65. Epub 2009 Jan 21.
176. Walberer M, etal., Exp Transl Stroke Med. 2010 Dec 20;2(1):22.
177. Wan X, etal., Am J Physiol Renal Physiol. 2011 Apr;300(4):F857-63. Epub 2011 Feb 2.
178. Wang HN, etal., World J Gastroenterol. 2008 Dec 21;14(47):7240-6.
179. Wang J, etal., Shock. 2012 Mar;37(3):333-40. doi: 10.1097/SHK.0b013e318240bdc8.
180. Wang L, etal., Zhen Ci Yan Jiu. 2013 Jun;38(3):208-13.
181. Wang LW, etal., World J Gastroenterol. 2012 Oct 28;18(40):5709-18. doi: 10.3748/wjg.v18.i40.5709.
182. Wang M, etal., Proc Natl Acad Sci U S A. 2009 Oct 13;106(41):17499-504. Epub 2009 Sep 25.
183. Wang Y, etal., Exp Ther Med. 2013 Nov;6(5):1322-1326. Epub 2013 Sep 4.
184. Wang Y, etal., J Reprod Immunol. 2011 Dec;92(1-2):45-53. doi: 10.1016/j.jri.2011.07.002. Epub 2011 Sep 13.
185. Wei F, etal., Acta Trop. 2009 Sep;111(3):284-8. doi: 10.1016/j.actatropica.2009.03.010. Epub 2009 May 23.
186. Wei XQ, etal., Immunol Lett. 2004 Jun 15;94(1-2):35-7.
187. Wheeler RD, etal., Cytokine. 2003 Feb 21;21(4):161-6.
188. Wieland CW, etal., Infect Immun. 2007 Oct;75(10):5068-72. Epub 2007 Jul 30.
189. Wildbaum G, etal., J Immunol. 1998 Dec 1;161(11):6368-74.
190. Xing SS, etal., Mol Med. 2010 Nov-Dec;16(11-12):465-70. Epub 2010 Jul 12.
191. Xu B, etal., J Interferon Cytokine Res. 1998 Sep;18(9):653-9.
192. Xu G, etal., Cell Biol Int. 2009 Apr;33(4):466-74. doi: 10.1016/j.cellbi.2008.07.023. Epub 2008 Aug 6.
193. Xu J, etal., J Pediatr Gastroenterol Nutr. 2011 Feb;52(2):140-6.
194. Yamagata S, etal., Clin Exp Immunol. 2008 Dec;154(3):295-304. Epub 2008 Sep 23.
195. Yamanaka K, etal., Clin Cancer Res. 2006 Jan 15;12(2):376-82.
196. Yang J, etal., Hum Gene Ther. 2007 Apr;18(4):323-32.
197. Yang LP, etal., Invest Ophthalmol Vis Sci. 2009 May;50(5):2319-27. Epub 2008 Nov 14.
198. Yang Y, etal., J Allergy Clin Immunol. 2020 Apr 29. pii: S0091-6749(20)30576-5. doi: 10.1016/j.jaci.2020.04.027.
199. Yang YJ, etal., World J Gastroenterol. 2005 Aug 7;11(29):4524-9.
200. Ye XJ, etal., Clin Exp Immunol. 2004 Jun;136(3):440-7.
201. Ye XJ, etal., Clin Exp Immunol. 2007 Sep;149(3):553-60. Epub 2007 Jul 10.
202. Zhang DQ, etal., Evid Based Complement Alternat Med. 2013;2013:731932. doi: 10.1155/2013/731932. Epub 2013 Jul 28.
203. Zhang J, etal., Gene. 2014 Mar 10;537(2):230-7. doi: 10.1016/j.gene.2013.12.062. Epub 2014 Jan 9.
204. Zhang J, etal., J Ethnopharmacol. 2013 Jul 9;148(2):563-9. doi: 10.1016/j.jep.2013.04.053. Epub 2013 May 16.
205. Zhang QX, etal., Zhonghua Gan Zang Bing Za Zhi. 2016 May 20;24(5):352-7. doi: 10.3760/cma.j.issn.1007-3418.2016.05.008.
206. Zhang R, etal., Inflammation. 2009 Apr;32(2):109-19.
207. Zhao H, etal., Br J Haematol. 2014 Sep;166(5):767-73. doi: 10.1111/bjh.12934. Epub 2014 May 7.
Additional References at PubMed
PMID:9702748   PMID:10048765   PMID:10227969   PMID:10227975   PMID:10653850   PMID:10843730   PMID:10903731   PMID:11131641   PMID:11429161   PMID:11714750   PMID:11894097   PMID:11894098  
PMID:11907086   PMID:12787406   PMID:12829194   PMID:14528293   PMID:15220916   PMID:15843532   PMID:15890643   PMID:16460811   PMID:16482511   PMID:16707557   PMID:16949315   PMID:17010950  
PMID:17220368   PMID:17352829   PMID:18504504   PMID:18662782   PMID:19088061   PMID:19666510   PMID:20027291   PMID:21147091   PMID:21273803   PMID:21321938   PMID:21323571   PMID:21442623  
PMID:21882482   PMID:22642744   PMID:23132931   PMID:23376485   PMID:23725508   PMID:23747799   PMID:23823918   PMID:23844157   PMID:24414074   PMID:24615654   PMID:24816434   PMID:25022959  
PMID:25500532   PMID:25752290   PMID:25918710   PMID:26004155   PMID:26252165   PMID:26424019   PMID:26558633   PMID:26725437   PMID:28373090   PMID:29786104   PMID:31923399   PMID:33051554  
PMID:33137409   PMID:33236152  


Genomics

Comparative Map Data
Il18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2850,904,630 - 50,932,887 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl850,906,960 - 50,932,887 (+)Ensembl
Rnor_6.0855,009,666 - 55,016,286 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl854,993,859 - 55,016,299 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0853,606,988 - 53,613,608 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4853,936,584 - 53,943,228 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1853,955,637 - 53,962,282 (+)NCBI
Celera850,474,845 - 50,479,055 (+)NCBICelera
Cytogenetic Map8q23NCBI
IL18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11112,143,253 - 112,164,096 (-)EnsemblGRCh38hg38GRCh38
GRCh3811112,143,251 - 112,164,104 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711112,013,983 - 112,034,817 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611111,519,186 - 111,540,050 (-)NCBINCBI36hg18NCBI36
Build 3411111,519,185 - 111,540,050NCBI
Celera11109,167,214 - 109,188,073 (-)NCBI
Cytogenetic Map11q23.1NCBI
HuRef11107,938,095 - 107,959,011 (-)NCBIHuRef
CHM1_111111,897,441 - 111,918,303 (-)NCBICHM1_1
Il18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39950,466,000 - 50,493,141 (+)NCBIGRCm39mm39
GRCm39 Ensembl950,466,127 - 50,493,140 (+)Ensembl
GRCm38950,554,700 - 50,581,841 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl950,554,827 - 50,581,840 (+)EnsemblGRCm38mm10GRCm38
MGSCv37950,373,473 - 50,389,942 (+)NCBIGRCm37mm9NCBIm37
MGSCv36950,317,598 - 50,334,067 (+)NCBImm8
Celera947,860,314 - 47,877,082 (+)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map927.75NCBI
Il18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541213,806,553 - 13,825,634 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541213,807,361 - 13,826,007 (-)NCBIChiLan1.0ChiLan1.0
IL18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111110,867,586 - 110,888,371 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11110,867,586 - 110,888,371 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011107,024,376 - 107,045,194 (-)NCBIMhudiblu_PPA_v0panPan3
IL18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1520,972,742 - 20,995,327 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl520,972,871 - 20,995,348 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha520,907,590 - 20,917,853 (+)NCBI
ROS_Cfam_1.0520,994,967 - 21,017,974 (+)NCBI
UMICH_Zoey_3.1521,069,981 - 21,080,260 (+)NCBI
UNSW_CanFamBas_1.0520,970,245 - 20,980,530 (+)NCBI
UU_Cfam_GSD_1.0521,018,633 - 21,028,888 (+)NCBI
Il18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494794,380,523 - 94,398,669 (-)NCBI
SpeTri2.0NW_0049366122,306,963 - 2,325,086 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl939,834,966 - 39,873,300 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1939,839,959 - 39,861,258 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2944,692,120 - 44,713,415 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IL18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11103,485,868 - 103,511,632 (-)NCBI
ChlSab1.1 Ensembl1103,482,083 - 103,510,150 (-)Ensembl
Vero_WHO_p1.0NW_02366604322,475,303 - 22,498,316 (+)NCBI
Il18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247847,294,286 - 7,312,959 (-)NCBI


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)82266233067662330Rat
2303564Gluco43Glucose level QTL 433blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82613018771130187Rat
2303572Insul13Insulin level QTL 132blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)82613018771130187Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)82720571554998217Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)82824291253961020Rat
1300146Rf17Renal function QTL 172.9renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)82824291273242912Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)82950266570386295Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815458482492Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83084815461290444Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83084815461290444Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83084815482460899Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83084815482460899Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83084815482460899Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83084815482460899Rat
1578755Pur5Proteinuria QTL 53.30.0001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83555193880551938Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83646953599083736Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84071306682925667Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84071306693965294Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)84186687675097878Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
631216Stl9Serum triglyceride level QTL 94.710.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)84186701070386132Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)84329616998968765Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)84329616998968765Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088624Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)84653172299083736Rat
2303570Gluco48Glucose level QTL 482blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)84980583194805831Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85009524982460899Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85009524982460899Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85009524982460899Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:60
Count of miRNA genes:53
Interacting mature miRNAs:56
Transcripts:ENSRNOT00000013093
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 34 18 19 18 1 11 11
Low 43 23 23 23 8 10 74 34 30 8
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_019165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC141541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF226163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ222813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY077842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY258448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ230327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ230328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ230329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U77776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U77777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y13337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000013093   ⟹   ENSRNOP00000013093
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl850,926,271 - 50,932,887 (+)Ensembl
Rnor_6.0 Ensembl854,993,859 - 55,016,299 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108779   ⟹   ENSRNOP00000082676
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl850,906,960 - 50,932,887 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119850   ⟹   ENSRNOP00000081241
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl850,906,960 - 50,932,554 (+)Ensembl
RefSeq Acc Id: NM_019165   ⟹   NP_062038
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2850,905,681 - 50,932,887 (+)NCBI
Rnor_6.0855,009,666 - 55,016,286 (+)NCBI
Rnor_5.0853,606,988 - 53,613,608 (+)NCBI
RGSC_v3.4853,936,584 - 53,943,228 (+)RGD
Celera850,474,845 - 50,479,055 (+)RGD
Sequence:
RefSeq Acc Id: XM_039080939   ⟹   XP_038936867
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2850,904,797 - 50,932,887 (+)NCBI
RefSeq Acc Id: XM_039080940   ⟹   XP_038936868
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2850,916,216 - 50,932,887 (+)NCBI
RefSeq Acc Id: XM_039080941   ⟹   XP_038936869
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2850,904,634 - 50,932,887 (+)NCBI
RefSeq Acc Id: XM_039080942   ⟹   XP_038936870
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2850,904,630 - 50,932,887 (+)NCBI
RefSeq Acc Id: XM_039080943   ⟹   XP_038936871
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2850,907,706 - 50,932,887 (+)NCBI
RefSeq Acc Id: XM_039080944   ⟹   XP_038936872
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2850,904,794 - 50,932,887 (+)NCBI
RefSeq Acc Id: XM_039080945   ⟹   XP_038936873
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2850,904,788 - 50,932,887 (+)NCBI
RefSeq Acc Id: XM_039080946   ⟹   XP_038936874
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2850,927,550 - 50,932,887 (+)NCBI
RefSeq Acc Id: XM_039080947   ⟹   XP_038936875
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2850,927,528 - 50,932,887 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_062038   ⟸   NM_019165
- Sequence:
RefSeq Acc Id: ENSRNOP00000013093   ⟸   ENSRNOT00000013093
RefSeq Acc Id: XP_038936870   ⟸   XM_039080942
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038936869   ⟸   XM_039080941
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038936873   ⟸   XM_039080945
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038936872   ⟸   XM_039080944
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038936867   ⟸   XM_039080939
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038936871   ⟸   XM_039080943
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038936868   ⟸   XM_039080940
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038936875   ⟸   XM_039080947
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038936874   ⟸   XM_039080946
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000081241   ⟸   ENSRNOT00000119850
RefSeq Acc Id: ENSRNOP00000082676   ⟸   ENSRNOT00000108779

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695945
Promoter ID:EPDNEW_R6470
Type:initiation region
Name:Il18_1
Description:interleukin 18
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0855,000,448 - 55,000,508EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: