Ncam1 (neural cell adhesion molecule 1) - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ncam1 (neural cell adhesion molecule 1) Rattus norvegicus
Analyze
Symbol: Ncam1
Name: neural cell adhesion molecule 1
RGD ID: 67378
Description: Enables LRR domain binding activity and phosphatase binding activity. Involved in several processes, including axon development; positive regulation of cardiac muscle cell proliferation; and thalamus development. Located in neuronal cell body and plasma membrane. Is active in Schaffer collateral - CA1 synapse; glutamatergic synapse; and synaptic membrane. Used to study middle cerebral artery infarction. Biomarker of Alzheimer's disease; congestive heart failure; hypothyroidism; mental depression; and myocardial infarction. Human ortholog(s) of this gene implicated in bipolar disorder; middle cerebral artery infarction; and pancreatic cancer. Orthologous to human NCAM1 (neural cell adhesion molecule 1); PARTICIPATES IN fibroblast growth factor signaling pathway; prion disease pathway; INTERACTS WITH 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Cd56; Cell adhesion molecule neural (CD56); cell adhesion molecule, neural (CD56); MGC124601; N-CAM; N-CAM-1; Ncam; NCAM-1; NCAM-C; NCAMC; neural cell adhesion molecule
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2849,865,629 - 50,165,687 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl849,865,633 - 50,166,014 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx855,369,921 - 55,670,295 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0853,648,800 - 53,949,178 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0851,513,059 - 51,813,448 (-)NCBIRnor_WKY
Rnor_6.0853,836,797 - 54,134,881 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl853,839,098 - 53,901,358 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0852,456,154 - 52,755,707 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4852,822,350 - 53,120,572 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1852,841,403 - 53,139,626 (-)NCBI
Celera849,420,106 - 49,716,981 (-)NCBICelera
RH 3.4 Map8537.1RGD
Cytogenetic Map8q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine  (EXP)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-methylcholanthrene  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-nitrophenol  (ISO)
5-azacytidine  (EXP)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
antimycin A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
camptothecin  (ISO)
chlorpyrifos  (EXP,ISO)
choline  (ISO)
cimetidine  (ISO)
curcumin  (EXP)
cyclosporin A  (ISO)
cypermethrin  (EXP)
dichloromethane  (EXP)
dioxygen  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
ethylbenzene  (EXP)
fipronil  (EXP)
flavonoids  (EXP)
fluoxetine  (EXP)
folic acid  (ISO)
fonofos  (ISO)
furan  (EXP)
gamma-aminobutyric acid  (EXP)
genistein  (ISO)
gentamycin  (EXP)
kainic acid  (EXP,ISO)
L-methionine  (ISO)
lead nitrate  (EXP)
lead(0)  (EXP,ISO)
lead(2+)  (EXP,ISO)
lead(II) chloride  (EXP)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
morphine  (EXP)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
nickel dichloride  (ISO)
nicotine  (ISO)
nitrofen  (EXP)
nitroglycerin  (EXP)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
parathion  (ISO)
PCB138  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenethyl caffeate  (EXP)
Phenoxybenzamine  (EXP)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
Ptaquiloside  (ISO)
pyrimidifen  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
terbufos  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
thimerosal  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Polysialic acid neural cell adhesion molecule (PSA-NCAM) is an adverse prognosis factor in glioblastoma, and regulates olig2 expression in glioma cell lines. Amoureux MC, etal., BMC Cancer. 2010 Mar 10;10:91. doi: 10.1186/1471-2407-10-91.
2. Association of neural cell adhesion molecule 1 gene polymorphisms with bipolar affective disorder in Japanese individuals. Arai M, etal., Biol Psychiatry 2004 Apr 15;55(8):804-10.
3. Coexpression of neural cell adhesion molecules and bcl-2 in intrahepatic cholangiocarcinoma originated from viral hepatitis: relationship to atypical reactive bile ductule. Asayama Y, etal., Pathol Int. 2002 Apr;52(4):300-6.
4. Aberrant phenotypic expression of CD15 and CD56 identifies poor prognostic acute promyelocytic leukemia patients. Breccia M, etal., Leuk Res. 2014 Feb;38(2):194-7. doi: 10.1016/j.leukres.2013.11.008. Epub 2013 Nov 18.
5. Novel cytosolic binding partners of the neural cell adhesion molecule: mapping the binding domains of PLC gamma, LANP, TOAD-64, syndapin, PP1, and PP2A. Buttner B, etal., Biochemistry. 2005 May 10;44(18):6938-47.
6. Integrin alphav and NCAM mediate the effects of GDNF on DA neuron survival, outgrowth, DA turnover and motor activity in rats. Chao CC, etal., Neurobiol Aging 2003 Jan-Feb;24(1):105-16.
7. Maternal isolation alters the expression of neural proteins during development: 'Stroking' stimulation reverses these effects. Chatterjee D, etal., Brain Res. 2007 Jul 16;1158:11-27. Epub 2007 May 3.
8. Neural cell adhesion molecule regulates chondrocyte hypertrophy in chondrogenic differentiation and experimental osteoarthritis. Cheng BF, etal., Stem Cells Transl Med. 2020 Feb;9(2):273-283. doi: 10.1002/sctm.19-0190. Epub 2019 Nov 19.
9. Tumor necrosis factor-related apoptosis-inducing ligand and CD56 expression in patients with type 1 diabetes mellitus. Cheung SS, etal., Pancreas. 2005 Mar;30(2):105-14.
10. An immunohistochemical study of the expression of adhesion molecules in gallbladder lesions. Choi YL, etal., J Histochem Cytochem. 2004 May;52(5):591-601.
11. The neural cell adhesion molecule binds to fibroblast growth factor receptor 2. Christensen C, etal., FEBS Lett. 2006 Jun 12;580(14):3386-90. Epub 2006 May 11.
12. The clinical role of epithelial-mesenchymal transition and stem cell markers in advanced-stage ovarian serous carcinoma effusions. Davidson B, etal., Hum Pathol. 2015 Jan;46(1):1-8. doi: 10.1016/j.humpath.2014.10.004. Epub 2014 Oct 16.
13. Ultrastructural localization of molecular subtypes of immunoreactive neural cell adhesion molecule (NCAM) in the adult rodent striatum. DiFiglia M, etal., J Neurosci. 1989 Dec;9(12):4158-68.
14. Gangliogenesis in the enteric nervous system: roles of the polysialylation of the neural cell adhesion molecule and its regulation by bone morphogenetic protein-4. Faure C, etal., Dev Dyn. 2007 Jan;236(1):44-59.
15. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
16. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
17. Developmental iodine deficiency and hypothyroidism impair neural development in rat hippocampus: involvement of doublecortin and NCAM-180. Gong J, etal., BMC Neurosci. 2010 Apr 23;11:50.
18. Maternal low-level lead exposure reduces the expression of PSA-NCAM and the activity of sialyltransferase in the hippocampi of neonatal rat pups. Hu Q, etal., Neurotoxicology. 2008 Jul;29(4):675-81. Epub 2008 May 21.
19. Evaluation of direct and cell-mediated triple-gene therapy in spinal cord injury in rats. Islamov RR, etal., Brain Res Bull. 2017 Jun;132:44-52. doi: 10.1016/j.brainresbull.2017.05.005. Epub 2017 May 18.
20. MMP-2, VCAM-1 and NCAM-1 expression in the brain of rats with experimental autoimmune encephalomyelitis as a trigger mechanism for synaptic plasticity and pathology. Jovanova-Nesic K and Shoenfeld Y, J Neuroimmunol. 2006 Dec;181(1-2):112-21. doi: 10.1016/j.jneuroim.2006.08.013. Epub 2006 Oct 24.
21. Expression of highly polysialylated neural cell adhesion molecule in pancreatic cancer neural invasive lesion. Kameda K, etal., Cancer Lett. 1999 Apr 1;137(2):201-7.
22. Abnormal ER quality control of neural GPI-anchored proteins via dysfunction in ER export processing in the frontal cortex of elderly subjects with schizophrenia. Kim P, etal., Transl Psychiatry. 2019 Jan 16;9(1):6. doi: 10.1038/s41398-018-0359-4.
23. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
24. Expression of the neural cell adhesion molecule NCAM in endocrine cells. Langley OK, etal., J Histochem Cytochem. 1989 Jun;37(6):781-91. doi: 10.1177/37.6.2723399.
25. Can malignancy in insulinoma be predicted by the expression patterns of beta 1,6 branching of asparagine-linked oligosaccharides and polysialic acid of the neural cell adhesion molecule? Li WP, etal., Virchows Arch. 1996 Nov;429(4-5):197-204.
26. Hippocampal long-term potentiation and neural cell adhesion molecules L1 and NCAM. Lüthl A, etal., Nature. 1994 Dec 22-29;372(6508):777-9. doi: 10.1038/372777a0.
27. Exercise increases mRNA levels for adhesion molecules N-CAM and L1 correlating with BDNF response. Macias M, etal., Neuroreport. 2002 Dec 20;13(18):2527-30.
28. Acute and repeated administration of cocaine differentially regulates expression of PSA-NCAM-positive neurons in the rat hippocampus. Mackowiak M, etal., Brain Res. 2005 Sep 7;1055(1-2):149-55.
29. Preventive Triple Gene Therapy Reduces the Negative Consequences of Ischemia-Induced Brain Injury after Modelling Stroke in a Rat. Markosyan V, etal., Int J Mol Sci. 2020 Sep 18;21(18). pii: ijms21186858. doi: 10.3390/ijms21186858.
30. PSA-NCAM in the developing and mature thalamus. Mazzetti S, etal., Brain Res Bull. 2007 Mar 30;71(6):578-86. Epub 2006 Dec 22.
31. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
32. Alcohol exposure alters the expression pattern of neural cell adhesion molecules during brain development. Miñana R, etal., J Neurochem. 2000 Sep;75(3):954-64. doi: 10.1046/j.1471-4159.2000.0750954.x.
33. Endogenous polysialylated neural cell adhesion molecule enhances the survival of retinal ganglion cells. Murphy JA, etal., Invest Ophthalmol Vis Sci. 2009 Feb;50(2):861-9. Epub 2008 Aug 29.
34. Neural cell adhesion molecule is a cardioprotective factor up-regulated by metabolic stress. Nagao K, etal., J Mol Cell Cardiol. 2010 Jun;48(6):1157-68. Epub 2009 Oct 22.
35. Expression of NCAM in activated portal fibroblasts during regeneration of the rat liver after partial hepatectomy. Nakatani K, etal., Arch Histol Cytol. 2006 Mar;69(1):61-72.
36. Targeting epileptogenesis-associated induction of neurogenesis by enzymatic depolysialylation of NCAM counteracts spatial learning dysfunction but fails to impact epilepsy development. Pekcec A, etal., J Neurochem. 2008 Apr;105(2):389-400. Epub 2008 Jan 8.
37. Reduced expression of neural cell adhesion molecule induces metastatic dissemination of pancreatic beta tumor cells. Perl AK, etal., Nat Med. 1999 Mar;5(3):286-91.
38. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
39. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
40. GOA pipeline RGD automated data pipeline
41. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
42. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
43. Involvement of neural cell adhesion molecule signaling in glial cell line-derived neurotrophic factor-induced analgesia in a rat model of neuropathic pain. Sakai A, etal., Pain. 2008 Jul 15;137(2):378-88. Epub 2007 Oct 29.
44. Neural cell adhesion molecule (NCAM) and perineural invasion in bile duct cancer. Seki H, etal., J Surg Oncol. 1993 Jun;53(2):78-83.
45. Comparative expression patterns of T-, N-, E-cadherins, beta-catenin, and polysialic acid neural cell adhesion molecule in rat cochlea during development: implications for the nature of Kolliker's organ. Simonneau L, etal., J Comp Neurol 2003 Apr 28;459(2):113-26.
46. Identification of a cDNA clone that contains the complete coding sequence for a 140-kD rat NCAM polypeptide. Small SJ, etal., J Cell Biol 1987 Nov;105(5):2335-45.
47. Triple-Gene Therapy for Stroke: A Proof-of-Concept in Vivo Study in Rats. Sokolov ME, etal., Front Pharmacol. 2018 Feb 15;9:111. doi: 10.3389/fphar.2018.00111. eCollection 2018.
48. Reciprocal actions of NCAM and tPA via a Ras-dependent MAPK activation in rat hippocampal neurons. Son H, etal., Biochem Biophys Res Commun 2002 Oct 25;298(2):262-8.
49. Involvement of the nerve growth factor-inducible large external glycoprotein (NILE) in neurite fasciculation in primary cultures of rat brain. Stallcup WB and Beasley L, Proc Natl Acad Sci U S A. 1985 Feb;82(4):1276-80.
50. Preparation of a conjugate of mitomycin C and anti-neural cell adhesion molecule monoclonal antibody for specific chemotherapy against biliary tract carcinoma. Tanaka J, etal., Surg Today. 1998;28(11):1217-20.
51. Learning-associated regulation of polysialylated neural cell adhesion molecule expression in the rat prefrontal cortex is region-, cell type- and paradigm-specific. Ter Horst JP, etal., Eur J Neurosci. 2008 Aug;28(3):419-27.
52. Expression of neural cell adhesion molecule in pancreatic cancer. Tezel E, etal., Pancreas. 2001 Mar;22(2):122-5.
53. Quantification of N-CAM and N-cadherin expression in axotomized and crushed rat sciatic nerve. Thornton MR, etal., J Anat. 2005 Jan;206(1):69-78.
54. The neural cell adhesion molecule is a receptor for rabies virus. Thoulouze MI, etal., J Virol. 1998 Sep;72(9):7181-90. doi: 10.1128/JVI.72.9.7181-7190.1998.
55. Exposure to stressors during juvenility disrupts development-related alterations in the PSA-NCAM to NCAM expression ratio: potential relevance for mood and anxiety disorders. Tsoory M, etal., Neuropsychopharmacology. 2008 Jan;33(2):378-93. Epub 2007 Apr 11.
56. The 140-kD isoform of CD56 (NCAM1) directs the molecular pathogenesis of ischemic cardiomyopathy. Tur MK, etal., Am J Pathol. 2013 Apr;182(4):1205-18. doi: 10.1016/j.ajpath.2012.12.027. Epub 2013 Feb 8.
57. Chronic antidepressant treatment induces contrasting patterns of synaptophysin and PSA-NCAM expression in different regions of the adult rat telencephalon. Varea E, etal., Eur Neuropsychopharmacol. 2007 Jul;17(8):546-57. Epub 2007 Feb 20.
58. Differential evolution of PSA-NCAM expression during aging of the rat telencephalon. Varea E, etal., Neurobiol Aging. 2009 May;30(5):808-18. Epub 2007 Sep 29.
59. PSA-NCAM expression in the rat medial prefrontal cortex. Varea E, etal., Neuroscience. 2005;136(2):435-43. Epub 2005 Oct 10.
60. Chronic stress induces opposite changes in the mRNA expression of the cell adhesion molecules NCAM and L1. Venero C, etal., Neuroscience 2002;115(4):1211-9.
61. Neurodegenerative Changes in Rat Brain in Streptozotocin Model of Alzheimer's Disease. Voronkov DN, etal., Bull Exp Biol Med. 2019 Apr;166(6):793-796. doi: 10.1007/s10517-019-04442-y. Epub 2019 Apr 26.
62. Regulation of the kynurenine metabolism pathway by Xiaoyao San and the underlying effect in the hippocampus of the depressed rat. Wang J, etal., J Ethnopharmacol. 2018 Mar 25;214:13-21. doi: 10.1016/j.jep.2017.11.037. Epub 2017 Dec 5.
63. Effects of fluoride on the expression of NCAM, oxidative stress, and apoptosis in primary cultured hippocampal neurons. Zhang M, etal., Toxicology. 2007 Jul 17;236(3):208-16. Epub 2007 Apr 24.
Additional References at PubMed
PMID:1694009   PMID:1699951   PMID:1996115   PMID:2483093   PMID:7613634   PMID:10766765   PMID:11817895   PMID:11936192   PMID:12477932   PMID:12757368   PMID:12774308   PMID:12786978  
PMID:12791257   PMID:12837245   PMID:12937148   PMID:13129654   PMID:14527396   PMID:14550299   PMID:14648585   PMID:14663363   PMID:14741393   PMID:14752119   PMID:15065125   PMID:15169853  
PMID:15256054   PMID:15490465   PMID:15738425   PMID:15964824   PMID:16776666   PMID:17213291   PMID:17223582   PMID:17336079   PMID:17355876   PMID:17460068   PMID:17513116   PMID:17634366  
PMID:17971410   PMID:18307098   PMID:18588533   PMID:19110037   PMID:19251664   PMID:19429186   PMID:19440374   PMID:19546439   PMID:19741142   PMID:19788570   PMID:19946888   PMID:20131911  
PMID:20175207   PMID:20598904   PMID:20610389   PMID:20617137   PMID:20622691   PMID:20843898   PMID:21115007   PMID:21389209   PMID:21436126   PMID:21700703   PMID:21708977   PMID:21787839  
PMID:21876469   PMID:21887252   PMID:22007488   PMID:22363206   PMID:22419107   PMID:22814229   PMID:22871113   PMID:22998873   PMID:23284756   PMID:23376485   PMID:23963795   PMID:24582971  
PMID:25002582   PMID:27559042   PMID:29169663   PMID:29476059   PMID:30477252  


Genomics

Comparative Map Data
Ncam1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2849,865,629 - 50,165,687 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl849,865,633 - 50,166,014 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx855,369,921 - 55,670,295 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0853,648,800 - 53,949,178 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0851,513,059 - 51,813,448 (-)NCBIRnor_WKY
Rnor_6.0853,836,797 - 54,134,881 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl853,839,098 - 53,901,358 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0852,456,154 - 52,755,707 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4852,822,350 - 53,120,572 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1852,841,403 - 53,139,626 (-)NCBI
Celera849,420,106 - 49,716,981 (-)NCBICelera
RH 3.4 Map8537.1RGD
Cytogenetic Map8q23NCBI
NCAM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811112,961,420 - 113,278,436 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl11112,961,247 - 113,278,436 (+)EnsemblGRCh38hg38GRCh38
GRCh3711112,832,142 - 113,149,158 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611112,337,205 - 112,654,368 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411112,337,367 - 112,652,530NCBI
Celera11109,984,979 - 110,302,094 (+)NCBICelera
Cytogenetic Map11q23.2NCBI
HuRef11108,759,657 - 109,076,750 (+)NCBIHuRef
CHM1_111112,714,961 - 113,032,145 (+)NCBICHM1_1
T2T-CHM13v2.011112,971,836 - 113,288,890 (+)NCBIT2T-CHM13v2.0
Ncam1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39949,413,429 - 49,710,909 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl949,413,436 - 49,710,225 (-)EnsemblGRCm39 Ensembl
GRCm38949,502,129 - 49,799,393 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl949,502,136 - 49,798,925 (-)EnsemblGRCm38mm10GRCm38
MGSCv37949,310,243 - 49,607,174 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36949,269,508 - 49,551,120 (-)NCBIMGSCv36mm8
Celera946,800,549 - 47,099,090 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map926.83NCBI
Ncam1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541214,630,443 - 14,923,926 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541214,630,109 - 14,923,847 (+)NCBIChiLan1.0ChiLan1.0
NCAM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111111,688,524 - 112,003,435 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11111,925,677 - 112,000,401 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011107,845,507 - 108,160,441 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
NCAM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1519,895,587 - 20,192,334 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl519,895,613 - 20,191,995 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha519,817,368 - 20,113,554 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0519,916,497 - 20,213,111 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl519,916,523 - 20,212,993 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1519,978,946 - 20,275,227 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0519,880,186 - 20,176,568 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0519,928,019 - 20,223,810 (-)NCBIUU_Cfam_GSD_1.0
Ncam1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494795,149,341 - 95,443,034 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366121,262,544 - 1,556,016 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049366121,262,557 - 1,556,281 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCAM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl940,628,631 - 40,960,591 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1940,628,602 - 40,960,605 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2945,463,323 - 45,794,721 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NCAM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11104,332,622 - 104,647,258 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604321,358,968 - 21,671,871 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncam1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247848,339,916 - 8,636,012 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247848,339,582 - 8,635,025 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ncam1
1215 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:33
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000042281, ENSRNOT00000047666
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)82266233067662330Rat
2303564Gluco43Glucose level QTL 433blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82613018771130187Rat
2303572Insul13Insulin level QTL 132blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)82613018771130187Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)82720571554998217Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)82824291253961020Rat
1300146Rf17Renal function QTL 172.9renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)82824291273242912Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
2302278Gluco36Glucose level QTL 364.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82950266550095447Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)82950266570386295Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815458482492Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83084815461290444Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83084815461290444Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83084815482460899Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83084815482460899Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83084815482460899Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83084815482460899Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83555193880551938Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83646953599083736Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84071306682925667Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84071306693965294Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)84186687675097878Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
631216Stl9Serum triglyceride level QTL 94.710.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)84186701070386132Rat
5684993Bmd84Bone mineral density QTL 844.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)84269268450095447Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)84329616998968765Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)84329616998968765Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088624Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)84653172299083736Rat
2303570Gluco48Glucose level QTL 482blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)84980583194805831Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85009524982460899Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85009524982460899Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85009524982460899Rat

Markers in Region
D8Mit2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2850,095,249 - 50,095,447 (+)MAPPERmRatBN7.2
Rnor_6.0854,065,044 - 54,065,241NCBIRnor6.0
Rnor_5.0852,685,897 - 52,686,094UniSTSRnor5.0
RGSC_v3.4853,049,279 - 53,049,477RGDRGSC3.4
RGSC_v3.4853,049,280 - 53,049,477UniSTSRGSC3.4
RGSC_v3.1853,068,254 - 53,068,551RGD
Celera849,646,904 - 49,647,101UniSTS
RH 3.4 Map8537.5UniSTS
RH 3.4 Map8537.5RGD
RH 2.0 Map8403.3RGD
Cytogenetic Map8q23UniSTS
D8Rat44  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2850,151,901 - 50,152,080 (+)MAPPERmRatBN7.2
Rnor_6.0854,121,386 - 54,121,562NCBIRnor6.0
Rnor_5.0852,742,239 - 52,742,415UniSTSRnor5.0
RGSC_v3.4853,106,856 - 53,107,032UniSTSRGSC3.4
RGSC_v3.4853,106,706 - 53,107,102RGDRGSC3.4
RGSC_v3.1853,125,910 - 53,126,086RGD
Celera849,703,547 - 49,703,723UniSTS
RH 3.4 Map8540.6RGD
RH 3.4 Map8540.6UniSTS
RH 2.0 Map8402.4RGD
SHRSP x BN Map838.1RGD
FHH x ACI Map846.93RGD
Cytogenetic Map8q23UniSTS
D8Rat215  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2850,088,598 - 50,088,795 (+)MAPPERmRatBN7.2
Rnor_6.0854,058,413 - 54,058,607NCBIRnor6.0
Rnor_5.0852,679,217 - 52,679,411UniSTSRnor5.0
RGSC_v3.4853,042,394 - 53,042,586RGDRGSC3.4
RGSC_v3.4853,042,395 - 53,042,589UniSTSRGSC3.4
RGSC_v3.1853,061,448 - 53,061,640RGD
Celera849,640,301 - 49,640,493UniSTS
SHRSP x BN Map838.1RGD
SHRSP x BN Map838.1UniSTS
Cytogenetic Map8q23UniSTS
D8Arb10  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2849,868,652 - 49,868,967 (+)MAPPERmRatBN7.2
Rnor_6.0853,839,814 - 53,840,128NCBIRnor6.0
Rnor_5.0852,458,915 - 52,459,229UniSTSRnor5.0
RGSC_v3.4852,822,490 - 52,822,804UniSTSRGSC3.4
RGSC_v3.1852,841,543 - 52,841,858RGD
Celera849,420,246 - 49,420,560UniSTS
Cytogenetic Map8q23UniSTS
D8Arb23  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2849,868,652 - 49,868,959 (+)MAPPERmRatBN7.2
Rnor_6.0853,839,814 - 53,840,120NCBIRnor6.0
Rnor_5.0852,458,915 - 52,459,221UniSTSRnor5.0
RGSC_v3.4852,822,490 - 52,822,796UniSTSRGSC3.4
RGSC_v3.1852,841,543 - 52,841,850RGD
Celera849,420,246 - 49,420,552UniSTS
Cytogenetic Map8q23UniSTS
RH134243  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2849,878,616 - 49,878,808 (+)MAPPERmRatBN7.2
Rnor_6.0853,849,778 - 53,849,969NCBIRnor6.0
Rnor_5.0852,468,879 - 52,469,070UniSTSRnor5.0
RGSC_v3.4852,832,454 - 52,832,645UniSTSRGSC3.4
Celera849,430,210 - 49,430,401UniSTS
RH 3.4 Map8537.6UniSTS
Cytogenetic Map8q23UniSTS
RH142318  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map8537.1UniSTS
Cytogenetic Map8q23UniSTS
BF400138  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2850,062,111 - 50,062,283 (+)MAPPERmRatBN7.2
Rnor_6.0854,031,926 - 54,032,097NCBIRnor6.0
Rnor_5.0852,652,730 - 52,652,901UniSTSRnor5.0
RGSC_v3.4853,015,908 - 53,016,079UniSTSRGSC3.4
Celera849,613,812 - 49,613,983UniSTS
RH 3.4 Map8538.6UniSTS
Cytogenetic Map8q23UniSTS
RH132569  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2849,915,271 - 49,915,464 (+)MAPPERmRatBN7.2
Rnor_6.0853,884,906 - 53,885,098NCBIRnor6.0
Rnor_5.0852,505,859 - 52,506,051UniSTSRnor5.0
RGSC_v3.4852,869,161 - 52,869,353UniSTSRGSC3.4
Celera849,466,848 - 49,467,040UniSTS
RH 3.4 Map8536.6UniSTS
Cytogenetic Map8q23UniSTS
RH143130  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2850,069,622 - 50,069,851 (+)MAPPERmRatBN7.2
Rnor_6.0854,039,437 - 54,039,665NCBIRnor6.0
Rnor_5.0852,660,241 - 52,660,469UniSTSRnor5.0
RGSC_v3.4853,023,419 - 53,023,647UniSTSRGSC3.4
Celera849,621,323 - 49,621,551UniSTS
RH 3.4 Map8538.1UniSTS
Cytogenetic Map8q23UniSTS
BF402045  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2849,881,838 - 49,881,984 (+)MAPPERmRatBN7.2
Rnor_6.0853,853,000 - 53,853,145NCBIRnor6.0
Rnor_5.0852,472,101 - 52,472,246UniSTSRnor5.0
RGSC_v3.4852,835,676 - 52,835,821UniSTSRGSC3.4
Celera849,433,432 - 49,433,577UniSTS
RH 3.4 Map8538.7UniSTS
Cytogenetic Map8q23UniSTS
RH138949  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2849,876,924 - 49,877,090 (+)MAPPERmRatBN7.2
Rnor_6.0853,848,086 - 53,848,251NCBIRnor6.0
Rnor_5.0852,467,187 - 52,467,352UniSTSRnor5.0
RGSC_v3.4852,830,762 - 52,830,927UniSTSRGSC3.4
Celera849,428,518 - 49,428,683UniSTS
RH 3.4 Map8536.6UniSTS
Cytogenetic Map8q23UniSTS
BF388149  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2849,884,136 - 49,884,303 (+)MAPPERmRatBN7.2
Rnor_6.0853,855,719 - 53,855,885NCBIRnor6.0
Rnor_5.0852,474,820 - 52,474,986UniSTSRnor5.0
RGSC_v3.4852,837,973 - 52,838,139UniSTSRGSC3.4
Celera849,435,729 - 49,435,895UniSTS
RH 3.4 Map8537.6UniSTS
Cytogenetic Map8q23UniSTS
D1S2854  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27115,614,738 - 115,616,116 (+)MAPPERmRatBN7.2
mRatBN7.2849,898,118 - 49,898,532 (+)MAPPERmRatBN7.2
Rnor_6.0853,869,700 - 53,870,115NCBIRnor6.0
Rnor_6.07125,135,860 - 125,137,237NCBIRnor6.0
Rnor_5.0852,488,801 - 52,489,216UniSTSRnor5.0
Rnor_5.07125,123,467 - 125,124,844UniSTSRnor5.0
RGSC_v3.47122,494,085 - 122,495,462UniSTSRGSC3.4
RGSC_v3.4852,851,954 - 52,852,369UniSTSRGSC3.4
Celera849,449,710 - 49,450,125UniSTS
Celera7111,917,433 - 111,918,810UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map8q23UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 26 6 4 4 74 22 27
Low 3 17 36 22 19 22 8 11 13 14 11 8
Below cutoff 15 15 15

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001395707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC101924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M32611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M32612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M63970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X06564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000042281   ⟹   ENSRNOP00000048442
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl849,865,633 - 50,166,014 (-)Ensembl
Rnor_6.0 Ensembl853,839,685 - 53,901,358 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000047666   ⟹   ENSRNOP00000046828
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl849,868,524 - 49,932,303 (-)Ensembl
Rnor_6.0 Ensembl853,839,683 - 53,901,358 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000072184   ⟹   ENSRNOP00000064969
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl853,870,121 - 53,874,934 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000082257   ⟹   ENSRNOP00000071509
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl849,867,519 - 49,931,725 (-)Ensembl
Rnor_6.0 Ensembl853,839,098 - 53,899,669 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099180   ⟹   ENSRNOP00000091588
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl849,867,519 - 49,931,745 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099284   ⟹   ENSRNOP00000080203
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl849,878,384 - 50,166,014 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113915   ⟹   ENSRNOP00000079021
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl849,867,519 - 50,166,014 (-)Ensembl
RefSeq Acc Id: NM_031521   ⟹   NP_113709
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,868,513 - 50,165,537 (-)NCBI
Rnor_6.0853,839,674 - 54,134,731 (-)NCBI
Rnor_5.0852,456,154 - 52,755,707 (-)NCBI
RGSC_v3.4852,822,350 - 53,120,572 (-)RGD
Celera849,420,106 - 49,716,981 (-)RGD
Sequence:
RefSeq Acc Id: XM_006242986   ⟹   XP_006243048
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,865,629 - 50,165,687 (-)NCBI
Rnor_6.0853,836,797 - 54,134,881 (-)NCBI
Rnor_5.0852,456,154 - 52,755,707 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006242988   ⟹   XP_006243050
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,865,629 - 50,165,687 (-)NCBI
Rnor_6.0853,836,797 - 54,134,881 (-)NCBI
Rnor_5.0852,456,154 - 52,755,707 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006242994   ⟹   XP_006243056
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,865,629 - 50,165,687 (-)NCBI
Rnor_6.0853,836,797 - 54,134,881 (-)NCBI
Rnor_5.0852,456,154 - 52,755,707 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595460   ⟹   XP_017450949
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,865,629 - 50,165,687 (-)NCBI
Rnor_6.0853,836,797 - 54,134,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595461   ⟹   XP_017450950
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,865,629 - 50,165,687 (-)NCBI
Rnor_6.0853,836,797 - 54,134,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595463   ⟹   XP_017450952
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,865,629 - 50,165,687 (-)NCBI
Rnor_6.0853,836,797 - 54,134,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595464   ⟹   XP_017450953
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,878,379 - 50,165,687 (-)NCBI
Rnor_6.0853,847,976 - 54,134,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595465   ⟹   XP_017450954
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,878,379 - 50,165,687 (-)NCBI
Rnor_6.0853,847,976 - 54,134,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039080805   ⟹   XP_038936733
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,865,629 - 50,165,687 (-)NCBI
RefSeq Acc Id: XM_039080807   ⟹   XP_038936735
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,865,629 - 50,165,687 (-)NCBI
RefSeq Acc Id: XM_039080808   ⟹   XP_038936736
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,865,629 - 50,165,687 (-)NCBI
RefSeq Acc Id: XM_039080809   ⟹   XP_038936737
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,865,629 - 50,165,687 (-)NCBI
RefSeq Acc Id: XM_039080810   ⟹   XP_038936738
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,865,629 - 50,165,687 (-)NCBI
RefSeq Acc Id: XM_039080811   ⟹   XP_038936739
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,865,629 - 50,165,687 (-)NCBI
RefSeq Acc Id: XM_039080812   ⟹   XP_038936740
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,865,629 - 50,165,687 (-)NCBI
RefSeq Acc Id: XM_039080813   ⟹   XP_038936741
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,878,379 - 50,165,687 (-)NCBI
RefSeq Acc Id: XM_039080814   ⟹   XP_038936742
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,878,379 - 50,165,687 (-)NCBI
RefSeq Acc Id: XM_039080815   ⟹   XP_038936743
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,878,379 - 50,165,687 (-)NCBI
RefSeq Acc Id: XM_039080816   ⟹   XP_038936744
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,878,379 - 50,165,687 (-)NCBI
RefSeq Acc Id: XM_039080817   ⟹   XP_038936745
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,878,379 - 50,165,687 (-)NCBI
RefSeq Acc Id: XM_039080818   ⟹   XP_038936746
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2849,878,379 - 50,165,687 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001382636 (Get FASTA)   NCBI Sequence Viewer  
  NP_001382637 (Get FASTA)   NCBI Sequence Viewer  
  NP_001382638 (Get FASTA)   NCBI Sequence Viewer  
  NP_001382639 (Get FASTA)   NCBI Sequence Viewer  
  NP_113709 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243048 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243050 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243056 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450949 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450950 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450952 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450953 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450954 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936733 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936735 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936736 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936737 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936738 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936739 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936740 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936741 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936742 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936743 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936744 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936745 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936746 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41679 (Get FASTA)   NCBI Sequence Viewer  
  AAA41680 (Get FASTA)   NCBI Sequence Viewer  
  AAA41681 (Get FASTA)   NCBI Sequence Viewer  
  AAI01925 (Get FASTA)   NCBI Sequence Viewer  
  CAA29809 (Get FASTA)   NCBI Sequence Viewer  
  EDL95446 (Get FASTA)   NCBI Sequence Viewer  
  EDL95447 (Get FASTA)   NCBI Sequence Viewer  
  EDL95448 (Get FASTA)   NCBI Sequence Viewer  
  EDL95449 (Get FASTA)   NCBI Sequence Viewer  
  P13596 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_113709   ⟸   NM_031521
- Peptide Label: precursor
- UniProtKB: P13596 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006243056   ⟸   XM_006242994
- Peptide Label: isoform X12
- UniProtKB: Q3T1H3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243050   ⟸   XM_006242988
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006243048   ⟸   XM_006242986
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017450952   ⟸   XM_017595463
- Peptide Label: isoform X13
- UniProtKB: F1LNY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450950   ⟸   XM_017595461
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZLW8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450949   ⟸   XM_017595460
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017450954   ⟸   XM_017595465
- Peptide Label: isoform X20
- Sequence:
RefSeq Acc Id: XP_017450953   ⟸   XM_017595464
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: ENSRNOP00000046828   ⟸   ENSRNOT00000047666
RefSeq Acc Id: ENSRNOP00000071509   ⟸   ENSRNOT00000082257
RefSeq Acc Id: ENSRNOP00000048442   ⟸   ENSRNOT00000042281
RefSeq Acc Id: ENSRNOP00000064969   ⟸   ENSRNOT00000072184
RefSeq Acc Id: XP_038936740   ⟸   XM_039080812
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038936739   ⟸   XM_039080811
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038936737   ⟸   XM_039080809
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038936736   ⟸   XM_039080808
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038936738   ⟸   XM_039080810
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038936735   ⟸   XM_039080807
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038936733   ⟸   XM_039080805
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038936745   ⟸   XM_039080817
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038936744   ⟸   XM_039080816
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038936746   ⟸   XM_039080818
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038936743   ⟸   XM_039080815
- Peptide Label: isoform X17
- UniProtKB: A0A8I5ZQ32 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936742   ⟸   XM_039080814
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038936741   ⟸   XM_039080813
- Peptide Label: isoform X14
RefSeq Acc Id: ENSRNOP00000091588   ⟸   ENSRNOT00000099180
RefSeq Acc Id: ENSRNOP00000079021   ⟸   ENSRNOT00000113915
RefSeq Acc Id: ENSRNOP00000080203   ⟸   ENSRNOT00000099284
Protein Domains
Fibronectin type-III   Ig-like   Ig-like C2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P13596-F1-model_v2 AlphaFold P13596 1-858 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:67378 AgrOrtholog
BioCyc Gene G2FUF-30571 BioCyc
Ensembl Genes ENSRNOG00000031890 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000046828 ENTREZGENE
  ENSRNOP00000046828.6 UniProtKB/TrEMBL
  ENSRNOP00000048442 ENTREZGENE
  ENSRNOP00000048442.5 UniProtKB/TrEMBL
  ENSRNOP00000071509 ENTREZGENE
  ENSRNOP00000071509.1 UniProtKB/TrEMBL
  ENSRNOP00000079021 ENTREZGENE
  ENSRNOP00000079021.1 UniProtKB/TrEMBL
  ENSRNOP00000080203 ENTREZGENE
  ENSRNOP00000080203.1 UniProtKB/TrEMBL
  ENSRNOP00000091588.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042281 ENTREZGENE
  ENSRNOT00000042281.7 UniProtKB/TrEMBL
  ENSRNOT00000047666 ENTREZGENE
  ENSRNOT00000047666.6 UniProtKB/TrEMBL
  ENSRNOT00000082257 ENTREZGENE
  ENSRNOT00000082257.2 UniProtKB/TrEMBL
  ENSRNOT00000099180.1 UniProtKB/TrEMBL
  ENSRNOT00000099284 ENTREZGENE
  ENSRNOT00000099284.1 UniProtKB/TrEMBL
  ENSRNOT00000113915 ENTREZGENE
  ENSRNOT00000113915.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7936825 IMAGE-MGC_LOAD
InterPro FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  Ncam1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neural_cell_adh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:24586 UniProtKB/Swiss-Prot
MGC_CLONE MGC:124601 IMAGE-MGC_LOAD
NCBI Gene 24586 ENTREZGENE
PANTHER PTHR12231:SF239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ncam1 PhenoGen
PRINTS NCAMFAMILY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K0M8_RAT UniProtKB/TrEMBL
  A0A8I5ZLW8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZQ32 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ACD2_RAT UniProtKB/TrEMBL
  F1LNY3 ENTREZGENE, UniProtKB/TrEMBL
  F1LUV9_RAT UniProtKB/TrEMBL
  NCAM1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q04017_RAT UniProtKB/TrEMBL
  Q3T1H3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2003-04-09 Ncam1  neural cell adhesion molecule 1      Symbol and Name updated 629477 APPROVED
2003-03-06 Ncam1  neural cell adhesion molecule 1  Ncam  neural cell adhesion molecule  Data Merged 628472 PROVISIONAL
2002-06-10 Ncam1        Symbol and Name status set to approved 70586 APPROVED
2001-10-23 Ncam  neural cell adhesion molecule      Name updated to reflect Human and Mouse nomenclature 68913 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_protein three isoforms exist of of apparent molecular masses 180, 140, and 120 kD 728977