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Gene: Ccl20 (C-C motif chemokine ligand 20) Rattus norvegicus
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Symbol: Ccl20
Name: C-C motif chemokine ligand 20
Description: Exhibits chemokine activity. Involved in several processes, including cellular response to molecule of bacterial origin; positive regulation of macromolecule biosynthetic process; and wound healing. Localizes to the extracellular space. Used to study transient cerebral ischemia. Biomarker of brain ischemia and ulcerative colitis. Orthologous to human CCL20 (C-C motif chemokine ligand 20); PARTICIPATES IN chemokine mediated signaling pathway; cytokine mediated signaling pathway; rheumatoid arthritis pathway; INTERACTS WITH 1,2,4-trimethylbenzene; 1-naphthyl isothiocyanate; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: beta chemokine exodus-1; beta-chemokine exodus-1; C-C motif chemokine 20; CC chemokine LARC; CC chemokine ST38; chemokine (C-C motif) ligand 20; liver and activation-regulated chemokine; macrophage inflammatory protein 3 alpha; MIP-3-alpha; Scya20; small inducible cytokine subfamily A20; small-inducible cytokine A20; ST38
Orthologs:
Homo sapiens (human) : CCL20 (C-C motif chemokine ligand 20)  HGNC  Alliance
Mus musculus (house mouse) : Ccl20 (chemokine (C-C motif) ligand 20)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ccl20 (C-C motif chemokine ligand 20)
Pan paniscus (bonobo/pygmy chimpanzee) : CCL20 (C-C motif chemokine ligand 20)
Canis lupus familiaris (dog) : CCL20 (C-C motif chemokine ligand 20)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ccl20 (C-C motif chemokine ligand 20)
Sus scrofa (pig) : CCL20 (C-C motif chemokine ligand 20)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0988,918,359 - 88,921,017 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl988,918,433 - 88,921,001 (+)Ensembl
Rnor_5.0988,662,765 - 88,665,379 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4982,440,965 - 82,443,542 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1982,624,383 - 82,626,960 (+)NCBI
Celera981,830,990 - 81,833,567 (+)NCBICelera
Cytogenetic Map9q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Ccl20
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 3646
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2019-11-13
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.