Xbp1 (X-box binding protein 1) - Rat Genome Database

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Gene: Xbp1 (X-box binding protein 1) Rattus norvegicus
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Symbol: Xbp1
Name: X-box binding protein 1
RGD ID: 1303073
Description: Enables DNA-binding transcription factor activity and sequence-specific DNA binding activity. Involved in several processes, including endoplasmic reticulum unfolded protein response; negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway; and serotonin secretion, neurotransmission. Predicted to be located in cytosol and endoplasmic reticulum membrane. Predicted to be part of RNA polymerase II transcription regulator complex. Predicted to be active in nucleus. Biomarker of borna disease and metabolic dysfunction-associated steatotic liver disease. Orthologous to human XBP1 (X-box binding protein 1); PARTICIPATES IN endoplasmic reticulum stress - the unfolded protein response pathway; forkhead class A signaling pathway; Endoplasmic Reticulum-associated degradation pathway; INTERACTS WITH (R)-noradrenaline; (S)-nicotine; 1,4-dithiothreitol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hepatocarcinogenesis-related transcription factor; HTF; X-box-binding protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81484,604,623 - 84,609,707 (+)NCBIGRCr8
mRatBN7.21480,390,629 - 80,395,713 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1480,390,643 - 80,395,693 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1484,792,890 - 84,797,957 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01486,033,004 - 86,038,075 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01482,482,326 - 82,487,393 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01485,753,736 - 85,758,820 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1485,753,760 - 85,758,145 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01486,423,839 - 86,428,923 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41486,151,910 - 86,156,975 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11486,171,054 - 86,176,119 (+)NCBI
Celera1479,276,264 - 79,281,348 (+)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(-)-anisomycin  (ISO)
(R)-noradrenaline  (EXP)
(R,R,R)-alpha-tocopherol  (ISO)
(S)-nicotine  (EXP)
1,4-dithiothreitol  (EXP,ISO)
1-[2-(3,4-dichlorophenyl)ethyl]-4-methylpiperazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dichlorophenol  (ISO)
2-amino-2-deoxy-D-glucopyranose  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-acetyldeoxynivalenol  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-aminophenol  (EXP)
4-hydroxynon-2-enal  (EXP)
4-hydroxyphenyl retinamide  (ISO)
4-nitrophenol  (ISO)
4-phenylbutyric acid  (EXP,ISO)
5-chloro-7-iodoquinolin-8-ol  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucosamine  (EXP,ISO)
aldehydo-D-glucose  (EXP,ISO)
all-trans-retinoic acid  (ISO)
Aloe emodin  (ISO)
alpha-pinene  (ISO)
aluminium atom  (ISO)
aluminium sulfate (anhydrous)  (ISO)
aluminium(0)  (ISO)
AM-251  (ISO)
amiloride  (ISO)
amiodarone  (ISO)
ammonium chloride  (EXP)
amosite asbestos  (ISO)
antimony trichloride  (ISO)
antimony(0)  (ISO)
antimycin A  (EXP,ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (EXP,ISO)
atrazine  (EXP,ISO)
baicalein  (EXP)
benzalkonium chloride  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
benzoates  (ISO)
beta-D-glucosamine  (EXP,ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (EXP)
bexarotene  (ISO)
bilirubin IXalpha  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
boric acid  (ISO)
bortezomib  (ISO)
brefeldin A  (ISO)
bromobenzene  (EXP)
bupropion  (ISO)
busulfan  (ISO)
butan-1-ol  (ISO)
butanal  (ISO)
Butylparaben  (ISO)
C.I. Natural Red 20  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
Calcimycin  (ISO)
cannabidiol  (ISO)
captan  (ISO)
carbamazepine  (ISO)
carbaryl  (ISO)
carbon nanotube  (ISO)
casticin  (ISO)
cerium  (ISO)
cerulenin  (ISO)
ceruletide  (EXP)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
chloroacetic acid  (ISO)
chlorogenic acid  (EXP)
chloropicrin  (ISO)
chlorpromazine  (EXP)
chlorpyrifos  (ISO)
choline  (ISO)
chrysene  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (EXP,ISO)
clodronic acid  (ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP,ISO)
cocaine  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
cordycepin  (ISO)
curcumin  (ISO)
cyclosporin A  (EXP,ISO)
D-glucose  (EXP,ISO)
D-penicillamine  (ISO)
dantrolene  (ISO)
DDE  (ISO)
deguelin  (ISO)
deoxynivalenol  (ISO)
desferrioxamine B  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (EXP,ISO)
dibenz[a,h]anthracene  (ISO)
Dibromoacetonitrile  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dichloromethane  (ISO)
diclofenac  (ISO)
dimethylarsinic acid  (ISO)
dioxygen  (EXP,ISO)
disodium selenite  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ebselen  (EXP)
endosulfan  (EXP)
entinostat  (ISO)
erlotinib hydrochloride  (EXP)
esketamine  (ISO)
ethanol  (ISO)
ethylbenzene  (ISO)
ethylene glycol  (EXP)
fenofibrate  (EXP,ISO)
fenpyroximate  (ISO)
fentin chloride  (EXP)
ferric ammonium citrate  (ISO)
flutamide  (EXP,ISO)
folic acid  (ISO)
folpet  (ISO)
fructose  (ISO)
furan  (EXP,ISO)
gadolinium trichloride  (EXP)
gemcitabine  (ISO)
gentamycin  (EXP)
geraniol  (ISO)
glucose  (EXP,ISO)
glutathione  (ISO)
glycine  (ISO)
glycyrrhetinate  (ISO)
glycyrrhetinic acid  (ISO)
graphene oxide  (ISO)
hemin  (ISO)
hexadecanoic acid  (EXP,ISO)
homocysteine  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
hydroxychloroquine  (ISO)
ibuprofen  (ISO)
Ibutilide  (EXP)
ifosfamide  (ISO)
Indeno[1,2,3-cd]pyrene  (ISO)
indometacin  (ISO)
indoxyl sulfate  (ISO)
isoliquiritigenin  (EXP)
ketamine  (ISO)
L-1,4-dithiothreitol  (EXP,ISO)
L-glutamic acid  (EXP)
L-methionine  (ISO)
lactacystin  (ISO)
lanthanum atom  (ISO)
lead diacetate  (EXP,ISO)
lead(0)  (EXP)
leflunomide  (ISO)
letrozole  (EXP)
linuron  (ISO)
lipopolysaccharide  (ISO)
luteolin  (ISO)
lycopene  (ISO)
manganese atom  (EXP)
manganese(0)  (EXP)
manganese(II) chloride  (EXP)
melatonin  (EXP,ISO)
menadione  (ISO)
metformin  (EXP,ISO)
methamphetamine  (EXP,ISO)
methidathion  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
mevastatin  (ISO)
microcystin-LR  (ISO)
minocycline  (EXP)
MK-2206  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
montelukast  (ISO)
Mycotrienin II  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-acetyl-L-cysteine  (EXP,ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (ISO)
nicotine  (EXP)
nilotinib  (ISO)
Nodularin  (ISO)
o-xylene  (ISO)
ochratoxin A  (ISO)
okadaic acid  (EXP)
oleic acid  (ISO)
orlistat  (ISO)
ozone  (EXP,ISO)
Pachymic acid  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
patulin  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
Perhexiline maleate  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
picene  (ISO)
picoxystrobin  (ISO)
pinostrobin  (ISO)
pirinixic acid  (ISO)
potassium iodide  (ISO)
prallethrin  (ISO)
procymidone  (ISO)
progesterone  (ISO)
propylparaben  (ISO)
pyrazinecarboxamide  (ISO)
quercetin  (EXP,ISO)
reactive oxygen species  (ISO)
resveratrol  (EXP,ISO)
ricolinostat  (ISO)
Riluzole  (ISO)
rimonabant  (ISO)
rotenone  (ISO)
Salidroside  (ISO)
SB 431542  (ISO)
SCH 23390  (EXP)
serpentine asbestos  (ISO)
sertraline  (ISO)
Shikonin  (EXP)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
simvastatin  (EXP)
sincalide  (EXP)
sirolimus  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (EXP,ISO)
Sodium iodate  (ISO)
sorafenib  (ISO)
SR 144528  (ISO)
streptozocin  (EXP,ISO)
sulfasalazine  (ISO)
sulforaphane  (ISO)
sulfur dioxide  (ISO)
sulindac  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tacrolimus hydrate  (ISO)
tamibarotene  (ISO)
tamoxifen  (ISO)
tauroursodeoxycholic acid  (EXP,ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
thapsigargin  (EXP,ISO)
Theaflavin 3,3'-digallate  (ISO)
thifluzamide  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
toluene  (ISO)
toyocamycin  (ISO)
tributylstannane  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (EXP,ISO)
trichostatin A  (ISO)
triclosan  (ISO)
Trienomycin A  (ISO)
trierixin  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (EXP)
trovafloxacin  (EXP)
tunicamycin  (EXP,ISO)
urethane  (ISO)
usnic acid  (ISO)
valproic acid  (ISO)
vanillic acid  (ISO)
withaferin A  (ISO)
zearalenone  (ISO)
zinc oxide  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adipose tissue development  (IEA,ISO,ISS)
angiogenesis  (IEA,ISO,ISS)
cellular response to amino acid stimulus  (IEA,ISO,ISS)
cellular response to antibiotic  (IEP)
cellular response to fluid shear stress  (ISO,ISS)
cellular response to fructose stimulus  (ISO)
cellular response to glucose starvation  (IEA,ISO,ISS)
cellular response to glucose stimulus  (ISO)
cellular response to insulin stimulus  (ISO)
cellular response to interleukin-4  (IEA,ISO,ISS)
cellular response to laminar fluid shear stress  (ISO,ISS)
cellular response to leukemia inhibitory factor  (IEA,ISO)
cellular response to lipopolysaccharide  (IEA,ISO,ISS)
cellular response to nutrient  (ISO)
cellular response to oxidative stress  (ISO)
cellular response to peptide hormone stimulus  (IEA,ISO,ISS)
cellular response to vascular endothelial growth factor stimulus  (ISO)
cholesterol homeostasis  (IEA,ISO,ISS)
endoplasmic reticulum unfolded protein response  (IDA,IEA,ISO,ISS)
endothelial cell proliferation  (IEA,ISO,ISS)
epithelial cell maturation involved in salivary gland development  (IEA,ISO)
exocrine pancreas development  (IEA,ISO)
fatty acid homeostasis  (IEA,ISO,ISS)
glandular epithelial cell maturation  (IEA,ISO)
intracellular triglyceride homeostasis  (IEA,ISO,ISS)
intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress  (IEA,ISO)
liver development  (IEA,ISO,ISS)
muscle organ development  (IEA)
negative regulation of apoptotic process  (ISO,ISS)
negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway  (IEA,IMP,ISO)
negative regulation of endoplasmic reticulum unfolded protein response  (ISO)
negative regulation of ERK1 and ERK2 cascade  (ISO)
negative regulation of myotube differentiation  (ISO)
negative regulation of SMAD protein signal transduction  (ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
negative regulation of transforming growth factor beta receptor signaling pathway  (ISO)
neuron development  (ISO)
phosphatidylinositol 3-kinase/protein kinase B signal transduction  (ISO)
positive regulation of angiogenesis  (ISO)
positive regulation of autophagy  (ISO)
positive regulation of B cell differentiation  (ISO,ISS)
positive regulation of cell migration  (IEA,ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of endothelial cell apoptotic process  (ISO)
positive regulation of fat cell differentiation  (IEA,ISO,ISS)
positive regulation of hepatocyte proliferation  (IEA,ISO,ISS)
positive regulation of immunoglobulin production  (IEA,ISO,ISS)
positive regulation of interleukin-6 production  (ISO)
positive regulation of lactation  (IEA,ISO,ISS)
positive regulation of MHC class II biosynthetic process  (IEA,ISO,ISS)
positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction  (ISO)
positive regulation of plasma cell differentiation  (IEA,ISO,ISS)
positive regulation of protein acetylation  (ISO)
positive regulation of protein import into nucleus  (ISO)
positive regulation of protein phosphorylation  (ISO)
positive regulation of T cell differentiation  (IEA,ISO,ISS)
positive regulation of TOR signaling  (ISO)
positive regulation of transcription by RNA polymerase II  (IEA,ISO,ISS)
positive regulation of vascular associated smooth muscle cell migration  (ISO)
positive regulation of vascular associated smooth muscle cell proliferation  (ISO)
positive regulation of vascular wound healing  (IEA,ISO)
protein destabilization  (IEA,ISO,ISS)
regulation of autophagy  (IEA,ISO,ISS)
regulation of cell growth  (ISO)
regulation of DNA-templated transcription  (IEA,TAS)
regulation of protein stability  (ISO)
regulation of transcription by RNA polymerase II  (ISO)
response to electrical stimulus  (IDA)
response to endoplasmic reticulum stress  (ISO)
response to insulin-like growth factor stimulus  (IEA,ISO,ISS)
response to nutrient  (IEP)
response to xenobiotic stimulus  (IDA)
serotonin secretion, neurotransmission  (IDA)
sterol homeostasis  (ISO,ISS)
transcription by RNA polymerase II  (IDA,ISO)
ubiquitin-dependent protein catabolic process  (IEA,ISO,ISS)
vascular endothelial growth factor receptor signaling pathway  (ISO)

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Unfolded protein response is involved in the pathology of human congenital hypothyroid goiter and rat non-goitrous congenital hypothyroidism. Baryshev M, etal., J Mol Endocrinol 2004 Jun;32(3):903-20.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. HSP72 protects cells from ER stress-induced apoptosis via enhancement of IRE1alpha-XBP1 signaling through a physical interaction. Gupta S, etal., PLoS Biol. 2010 Jul 6;8(7):e1000410. doi: 10.1371/journal.pbio.1000410.
5. Expression of XBP1s in peritoneal mesothelial cells is critical for inflammation-induced peritoneal fibrosis. Liu A, etal., Sci Rep. 2019 Dec 13;9(1):19043. doi: 10.1038/s41598-019-55557-1.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Palmitate induces insulin resistance in H4IIEC3 hepatocytes through reactive oxygen species produced by mitochondria. Nakamura S, etal., J Biol Chem. 2009 May 29;284(22):14809-18. doi: 10.1074/jbc.M901488200. Epub 2009 Mar 30.
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. Endoplasmic reticulum stress links obesity, insulin action, and type 2 diabetes. Ozcan U, etal., Science. 2004 Oct 15;306(5695):457-61.
10. Rapamycin inhibits postprandial-mediated X-box-binding protein-1 splicing in rat liver. Pfaffenbach KT, etal., J Nutr. 2010 May;140(5):879-84. Epub 2010 Mar 17.
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
13. The dysregulation of endoplasmic reticulum stress response in acute-on-chronic liver failure patients caused by acute exacerbation of chronic hepatitis B. Ren F, etal., J Viral Hepat. 2016 Jan;23(1):23-31. doi: 10.1111/jvh.12438. Epub 2015 Jul 31.
14. GOA pipeline RGD automated data pipeline
15. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
16. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
17. ZIKV infection activates the IRE1-XBP1 and ATF6 pathways of unfolded protein response in neural cells. Tan Z, etal., J Neuroinflammation. 2018 Sep 21;15(1):275. doi: 10.1186/s12974-018-1311-5.
18. Behavioral stress and activated serotonergic neurotransmission induce XBP-1 splicing in the rat brain. Toda H, etal., Brain Res. 2006 Sep 27;1112(1):26-32. Epub 2006 Aug 2.
19. The impact of the unfolded protein response on human disease. Wang S and Kaufman RJ, J Cell Biol. 2012 Jun 25;197(7):857-67. doi: 10.1083/jcb.201110131.
20. Endoplasmic reticulum stress and neurodegeneration in rats neonatally infected with borna disease virus. Williams BL and Lipkin WI, J Virol. 2006 Sep;80(17):8613-26. doi: 10.1128/JVI.00836-06.
21. Effect of Creosote Bush-Derived NDGA on Expression of Genes Involved in Lipid Metabolism in Liver of High-Fructose Fed Rats: Relevance to NDGA Amelioration of Hypertriglyceridemia and Hepatic Steatosis. Zhang H, etal., PLoS One. 2015 Sep 22;10(9):e0138203. doi: 10.1371/journal.pone.0138203. eCollection 2015.
Additional References at PubMed
PMID:1903538   PMID:2196176   PMID:8657566   PMID:10652269   PMID:10675042   PMID:11460154   PMID:11779464   PMID:12612580   PMID:12805554   PMID:14559994   PMID:15489334   PMID:16332684  
PMID:16362047   PMID:16461360   PMID:17612490   PMID:17715997   PMID:18556558   PMID:18946015   PMID:19135031   PMID:19328063   PMID:20102225   PMID:20170659   PMID:20348923   PMID:20348926  
PMID:20349222   PMID:20408817   PMID:20439489   PMID:20955178   PMID:21317886   PMID:21337367   PMID:21436843   PMID:21784843   PMID:22529213   PMID:22580202   PMID:22715395   PMID:22970712  
PMID:23152784   PMID:23184933   PMID:23457509   PMID:23508570   PMID:23529610   PMID:23623498   PMID:24333444   PMID:24753614   PMID:25007519   PMID:25190803   PMID:25239945   PMID:25280941  
PMID:25656649   PMID:26315405   PMID:26319553   PMID:26883836   PMID:27133203   PMID:27929749   PMID:27957794   PMID:29414031   PMID:29956773   PMID:30317635   PMID:32199617   PMID:33055426  
PMID:33393852   PMID:33395585   PMID:33789142   PMID:34676402   PMID:34964131   PMID:35008595   PMID:35497095   PMID:36705422  


Genomics

Comparative Map Data
Xbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81484,604,623 - 84,609,707 (+)NCBIGRCr8
mRatBN7.21480,390,629 - 80,395,713 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1480,390,643 - 80,395,693 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1484,792,890 - 84,797,957 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01486,033,004 - 86,038,075 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01482,482,326 - 82,487,393 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01485,753,736 - 85,758,820 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1485,753,760 - 85,758,145 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01486,423,839 - 86,428,923 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41486,151,910 - 86,156,975 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11486,171,054 - 86,176,119 (+)NCBI
Celera1479,276,264 - 79,281,348 (+)NCBICelera
Cytogenetic Map14q21NCBI
XBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382228,794,560 - 28,800,569 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2228,794,555 - 28,800,597 (-)EnsemblGRCh38hg38GRCh38
GRCh372229,190,548 - 29,196,557 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362227,520,548 - 27,526,560 (-)NCBINCBI36Build 36hg18NCBI36
Build 342227,515,102 - 27,521,114NCBI
Celera2212,990,518 - 12,996,530 (-)NCBICelera
Cytogenetic Map22q12.1NCBI
HuRef2212,155,463 - 12,161,487 (-)NCBIHuRef
CHM1_12229,149,582 - 29,155,594 (-)NCBICHM1_1
T2T-CHM13v2.02229,255,848 - 29,261,869 (-)NCBIT2T-CHM13v2.0
Xbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,470,641 - 5,475,993 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl115,470,659 - 5,475,893 (+)EnsemblGRCm39 Ensembl
GRCm38115,520,641 - 5,525,993 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,520,659 - 5,525,893 (+)EnsemblGRCm38mm10GRCm38
MGSCv37115,420,970 - 5,425,875 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36115,420,970 - 5,425,875 (+)NCBIMGSCv36mm8
Celera116,013,954 - 6,018,865 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.61NCBI
Xbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554553,037,885 - 3,041,827 (-)NCBIChiLan1.0ChiLan1.0
XBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22338,792,985 - 38,799,011 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12241,491,735 - 41,497,760 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0229,863,479 - 9,869,491 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12227,566,423 - 27,572,627 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2227,567,041 - 27,571,943 (-)Ensemblpanpan1.1panPan2
XBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12622,162,675 - 22,168,149 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2622,163,222 - 22,168,105 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2622,034,265 - 22,039,738 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02622,536,044 - 22,541,803 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2622,536,033 - 22,541,796 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12622,246,365 - 22,251,835 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02622,509,837 - 22,515,563 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02622,572,658 - 22,578,379 (-)NCBIUU_Cfam_GSD_1.0
Xbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118112,975,309 - 112,979,534 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366572,891,907 - 2,896,174 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366572,891,171 - 2,895,409 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
XBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1446,008,377 - 46,016,526 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11446,011,239 - 46,016,526 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21449,015,849 - 49,016,650 (-)NCBISscrofa10.2Sscrofa10.2susScr3
XBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11911,670,605 - 11,677,168 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045114,476,586 - 114,483,163 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Xbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247475,123,085 - 5,128,465 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Xbp1
15 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:166
Count of miRNA genes:127
Interacting mature miRNAs:136
Transcripts:ENSRNOT00000014044
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)147995092195876975Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)146875779683368335Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147341532392554092Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147341532392554092Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat

Markers in Region
D14Wox29  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21480,391,337 - 80,391,552 (+)MAPPERmRatBN7.2
Rnor_6.01485,754,445 - 85,754,659NCBIRnor6.0
Rnor_5.01486,424,548 - 86,424,762UniSTSRnor5.0
RGSC_v3.41486,152,600 - 86,152,814UniSTSRGSC3.4
Celera1479,276,973 - 79,277,187UniSTS
Cytogenetic Map14q21UniSTS
RH130248  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21480,395,444 - 80,395,624 (+)MAPPERmRatBN7.2
Rnor_6.01485,758,552 - 85,758,731NCBIRnor6.0
Rnor_5.01486,428,655 - 86,428,834UniSTSRnor5.0
RGSC_v3.41486,156,707 - 86,156,886UniSTSRGSC3.4
Celera1479,281,080 - 79,281,259UniSTS
RH 3.4 Map14571.5UniSTS
Cytogenetic Map14q21UniSTS
Xbp1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21480,394,057 - 80,394,147 (+)MAPPERmRatBN7.2
Rnor_6.01485,757,165 - 85,757,254NCBIRnor6.0
Rnor_5.01486,427,268 - 86,427,357UniSTSRnor5.0
Celera1479,279,693 - 79,279,782UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000014044   ⟹   ENSRNOP00000014044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1480,390,643 - 80,395,693 (+)Ensembl
Rnor_6.0 Ensembl1485,753,760 - 85,758,145 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102562   ⟹   ENSRNOP00000094622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1480,391,554 - 80,395,693 (+)Ensembl
RefSeq Acc Id: NM_001004210   ⟹   NP_001004210
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,604,623 - 84,609,707 (+)NCBI
mRatBN7.21480,390,629 - 80,395,713 (+)NCBI
Rnor_6.01485,753,736 - 85,758,820 (+)NCBI
Rnor_5.01486,423,839 - 86,428,923 (+)NCBI
RGSC_v3.41486,151,910 - 86,156,975 (+)RGD
Celera1479,276,264 - 79,281,348 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271731   ⟹   NP_001258660
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,604,623 - 84,609,707 (+)NCBI
mRatBN7.21480,390,629 - 80,395,713 (+)NCBI
Rnor_6.01485,753,736 - 85,758,820 (+)NCBI
Rnor_5.01486,423,839 - 86,428,923 (+)NCBI
Celera1479,276,264 - 79,281,348 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001004210   ⟸   NM_001004210
- Peptide Label: isoform XBP1(U)
- UniProtKB: Q9R1S4 (UniProtKB/Swiss-Prot),   A6IKL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258660   ⟸   NM_001271731
- Peptide Label: isoform XBP1(S)
- UniProtKB: A0A140TAA7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000014044   ⟸   ENSRNOT00000014044
Ensembl Acc Id: ENSRNOP00000094622   ⟸   ENSRNOT00000102562
Protein Domains
bZIP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R1S4-F1-model_v2 AlphaFold Q9R1S4 1-267 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699456
Promoter ID:EPDNEW_R9980
Type:multiple initiation site
Name:Xbp1_1
Description:X-box binding protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01485,753,745 - 85,753,805EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303073 AgrOrtholog
BioCyc Gene G2FUF-15140 BioCyc
Ensembl Genes ENSRNOG00000010298 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014044.7 UniProtKB/TrEMBL
  ENSRNOT00000102562.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7115933 IMAGE-MGC_LOAD
InterPro bZIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  bZIP_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ER_Stress-Reg_TF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:289754 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:94999 IMAGE-MGC_LOAD
NCBI Gene 289754 ENTREZGENE
PANTHER BZIP DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  X-BOX BINDING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  X-BOX-BINDING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam bZIP_1 UniProtKB/TrEMBL
  bZIP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Xbp1 PhenoGen
PROSITE BZIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BZIP_BASIC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010298 RatGTEx
SMART BRLZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57959 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A140TAA7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ANK3_RAT UniProtKB/TrEMBL
  A6IKL9 ENTREZGENE, UniProtKB/TrEMBL
  A6IKM0_RAT UniProtKB/TrEMBL
  A6IKM1_RAT UniProtKB/TrEMBL
  A6IKM2_RAT UniProtKB/TrEMBL
  A6IKM3_RAT UniProtKB/TrEMBL
  A6IKM4_RAT UniProtKB/TrEMBL
  A6IKM5_RAT UniProtKB/TrEMBL
  Q9R1S4 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Xbp1  X-box binding protein 1      Symbol and Name status set to approved 1299863 APPROVED
2005-02-14 Xbp1  X-box binding protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL