Apod (apolipoprotein D) - Rat Genome Database

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Gene: Apod (apolipoprotein D) Rattus norvegicus
Analyze
Symbol: Apod
Name: apolipoprotein D
RGD ID: 2137
Description: Predicted to enable cholesterol binding activity. Involved in several processes, including aging; nervous system development; and tissue regeneration. Located in several cellular components, including cytosolic ribosome; dendrite; and neuronal cell body. Biomarker of status epilepticus and vasculogenic impotence. Human ortholog(s) of this gene implicated in obesity and type 2 diabetes mellitus. Orthologous to human APOD (apolipoprotein D); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AOPDGN; apo-D
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21169,431,261 - 69,452,306 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1169,431,260 - 69,452,305 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1178,268,259 - 78,289,302 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01170,921,321 - 70,942,415 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01169,957,346 - 69,978,387 (+)NCBIRnor_WKY
Rnor_6.01172,705,204 - 72,726,263 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1172,705,129 - 72,726,301 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01175,781,496 - 75,804,020 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1168,851,395 - 68,872,467 (+)NCBICelera
Cytogenetic Map11q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,3-bis(4-hydroxyphenyl)propionitrile  (ISO)
2-acetamidofluorene  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methyladenine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
8-anilinonaphthalene-1-sulfonic acid  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alachlor  (EXP)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-retinoic acid  (ISO)
all-trans-retinol  (ISO)
ammonium chloride  (EXP)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bexarotene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
chloroquine  (ISO)
cisplatin  (ISO)
clozapine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
DAUDA  (ISO)
dexamethasone  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (EXP)
dichlorine  (EXP)
dioxygen  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
fenvalerate  (EXP)
flavonoids  (EXP)
flurbiprofen  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
furan  (EXP)
genistein  (ISO)
haloperidol  (ISO)
indometacin  (ISO)
isoprenaline  (ISO)
medroxyprogesterone acetate  (ISO)
methamphetamine  (EXP)
methapyrilene  (ISO)
methotrexate  (ISO)
methylseleninic acid  (ISO)
monosodium L-glutamate  (ISO)
naphthalene  (ISO)
nickel atom  (ISO)
nitrofen  (EXP)
ozone  (EXP,ISO)
paclitaxel  (ISO)
paraquat  (ISO)
PCB138  (ISO)
phencyclidine  (ISO)
progesterone  (ISO)
propanal  (ISO)
raloxifene  (ISO)
silicon dioxide  (ISO)
sirolimus  (ISO)
testosterone  (EXP,ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (EXP,ISO)
vincristine  (ISO)
vinyl carbamate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Apolipoprotein D gene polymorphism: a new genetic marker for type 2 diabetic subjects in Nauru and south India. Baker WA, etal., Diabet Med. 1994 Dec;11(10):947-52.
2. Accumulation of apolipoproteins in the regenerating and remyelinating mammalian peripheral nerve. Identification of apolipoprotein D, apolipoprotein A-IV, apolipoprotein E, and apolipoprotein A-I. Boyles JK, etal., J Biol Chem. 1990 Oct 15;265(29):17805-15.
3. Meta-analysis of age-related gene expression profiles identifies common signatures of aging. de Magalhaes JP, etal., Bioinformatics. 2009 Apr 1;25(7):875-81. Epub 2009 Feb 2.
4. Increased expression of apolipoprotein D following experimental traumatic brain injury. Franz G, etal., J Neurochem. 1999 Oct;73(4):1615-25.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. Expression profiling of insulin action in human myotubes: induction of inflammatory and pro-angiogenic pathways in relationship with glycogen synthesis and type 2 diabetes. Hansen L, etal., Biochem Biophys Res Commun. 2004 Oct 15;323(2):685-95.
8. Antipsychotic drugs differentially modulate apolipoprotein D in rat brain. Khan MM, etal., J Neurochem. 2003 Sep;86(5):1089-100.
9. Factors affecting the lipid and apolipoprotein levels of cord sera. Lane DM and McConathy WJ, Pediatr Res. 1983 Feb;17(2):83-91.
10. Gene expression profiling of an arteriogenic impotence model. Lin CS, etal., Biochem Biophys Res Commun. 2001 Jul 13;285(2):565-9.
11. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
12. Hippocampal alterations of apolipoprotein E and D mRNA levels in vivo and in vitro following kainate excitotoxicity. Montpied P, etal., Epilepsy Res. 1999 Jun;35(2):135-46.
13. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
14. Apolipoprotein D gene expression in the rat brain and light and electron microscopic immunocytochemistry of apolipoprotein D expression in the cerebellum of neonatal, immature and adult rats. Ong WY, etal., Neuroscience. 1999 Mar;90(3):913-22.
15. GOA pipeline RGD automated data pipeline
16. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. Comprehensive gene review and curation RGD comprehensive gene curation
19. Apolipoprotein D is elevated in oligodendrocytes in the peri-infarct region after experimental stroke: influence of enriched environment. Rickhag M, etal., J Cereb Blood Flow Metab. 2008 Mar;28(3):551-62. Epub 2007 Sep 12.
20. Apolipoprotein D inhibits platelet-derived growth factor-BB-induced vascular smooth muscle cell proliferated by preventing translocation of phosphorylated extracellular signal regulated kinase 1/2 to the nucleus. Sarjeant JM, etal., Arterioscler Thromb Vasc Biol. 2003 Dec;23(12):2172-7. Epub 2003 Oct 9.
21. Regeneration-associated high level expression of apolipoprotein D mRNA in endoneurial fibroblasts of peripheral nerve. Spreyer P, etal., EMBO J 1990 Aug;9(8):2479-84.
22. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
23. Increased levels of apolipoprotein D in cerebrospinal fluid and hippocampus of Alzheimer's patients. Terrisse L, etal., J Neurochem. 1998 Oct;71(4):1643-50.
24. Apolipoprotein-D polymorphism: a genetic marker for obesity and hyperinsulinemia. Vijayaraghavan S, etal., J Clin Endocrinol Metab. 1994 Aug;79(2):568-70.
Additional References at PubMed
PMID:2090718   PMID:9278274   PMID:11344130   PMID:11744388   PMID:15192024   PMID:16502470   PMID:18419796   PMID:18842892   PMID:19056867   PMID:19176353   PMID:19414061   PMID:19429117  
PMID:20551380   PMID:21705670   PMID:23376485   PMID:23533145   PMID:24082102   PMID:27068509   PMID:27566528  


Genomics

Comparative Map Data
Apod
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21169,431,261 - 69,452,306 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1169,431,260 - 69,452,305 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1178,268,259 - 78,289,302 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01170,921,321 - 70,942,415 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01169,957,346 - 69,978,387 (+)NCBIRnor_WKY
Rnor_6.01172,705,204 - 72,726,263 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1172,705,129 - 72,726,301 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01175,781,496 - 75,804,020 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1168,851,395 - 68,872,467 (+)NCBICelera
Cytogenetic Map11q22NCBI
APOD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383195,568,705 - 195,583,940 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl3195,568,705 - 195,584,033 (-)EnsemblGRCh38hg38GRCh38
GRCh373195,295,576 - 195,310,811 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363196,776,865 - 196,792,278 (-)NCBINCBI36Build 36hg18NCBI36
Celera3193,705,274 - 193,720,781 (-)NCBICelera
Cytogenetic Map3q29NCBI
HuRef3192,666,066 - 192,681,572 (-)NCBIHuRef
CHM1_13195,258,489 - 195,273,995 (-)NCBICHM1_1
T2T-CHM13v2.03198,275,776 - 198,291,015 (-)NCBIT2T-CHM13v2.0
Apod
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391631,115,010 - 31,133,626 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1631,115,010 - 31,133,626 (-)EnsemblGRCm39 Ensembl
GRCm381631,296,192 - 31,314,808 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1631,296,192 - 31,314,808 (-)EnsemblGRCm38mm10GRCm38
MGSCv371631,296,278 - 31,314,682 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361631,215,939 - 31,234,343 (-)NCBIMGSCv36mm8
Celera1631,811,354 - 31,812,738 (-)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1621.41NCBI
Apod
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542013,553,058 - 13,573,690 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542013,553,254 - 13,570,357 (+)NCBIChiLan1.0ChiLan1.0
APOD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13203,152,476 - 203,167,888 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3203,152,476 - 203,168,060 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03192,852,887 - 192,868,233 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
APOD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13330,490,149 - 30,504,804 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3330,488,135 - 30,509,289 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3330,513,383 - 30,531,252 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03330,739,971 - 30,756,943 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3330,737,959 - 30,803,155 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13330,534,404 - 30,551,475 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03330,570,143 - 30,588,341 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03331,191,636 - 31,209,901 (+)NCBIUU_Cfam_GSD_1.0
Apod
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602143,660,676 - 143,676,991 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936833259,660 - 277,246 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936833260,798 - 277,060 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APOD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13132,514,949 - 132,562,599 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113132,514,546 - 132,562,594 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213142,076,180 - 142,096,088 (+)NCBISscrofa10.2Sscrofa10.2susScr3
APOD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11589,612,210 - 89,624,038 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1589,612,040 - 89,624,012 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604163,376,402 - 63,388,926 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Apod
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473062,530,673 - 62,555,129 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473062,535,005 - 62,552,405 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Apod
177 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:163
Count of miRNA genes:129
Interacting mature miRNAs:139
Transcripts:ENSRNOT00000073330
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116642214886241447Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116944607082846715Rat

Markers in Region
D11Rat61  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21169,446,070 - 69,446,234 (+)MAPPERmRatBN7.2
Rnor_6.01172,720,029 - 72,720,192NCBIRnor6.0
Rnor_5.01175,797,786 - 75,797,949UniSTSRnor5.0
Celera1168,866,233 - 68,866,396UniSTS
SHRSP x BN Map1133.2098RGD
SHRSP x BN Map1133.2098UniSTS
Cytogenetic Map11q11UniSTS
RH128953  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21169,452,109 - 69,452,296 (+)MAPPERmRatBN7.2
Rnor_6.01172,726,068 - 72,726,254NCBIRnor6.0
Rnor_5.01175,803,825 - 75,804,011UniSTSRnor5.0
Celera1168,872,272 - 68,872,458UniSTS
RH 3.4 Map11404.4UniSTS
Cytogenetic Map11q11UniSTS
RH94864  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11q11UniSTS
BF405372  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21169,441,466 - 69,441,567 (+)MAPPERmRatBN7.2
Rnor_6.01172,715,425 - 72,715,525NCBIRnor6.0
Rnor_5.01175,793,182 - 75,793,282UniSTSRnor5.0
Celera1168,861,628 - 68,861,728UniSTS
Cytogenetic Map11q11UniSTS
BE118763  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21169,443,298 - 69,443,476 (+)MAPPERmRatBN7.2
Rnor_6.01172,717,257 - 72,717,434NCBIRnor6.0
Rnor_5.01175,795,014 - 75,795,191UniSTSRnor5.0
Celera1168,863,461 - 68,863,638UniSTS
RH 3.4 Map11555.73UniSTS
Cytogenetic Map11q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 3 66 4 3
Low 1 32 22 10 5 10 5 8 8 19 36 9 5
Below cutoff 2 11 29 25 12 25 16 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000073330   ⟹   ENSRNOP00000064368
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1169,431,260 - 69,452,305 (+)Ensembl
Rnor_6.0 Ensembl1172,705,129 - 72,726,301 (+)Ensembl
RefSeq Acc Id: NM_012777   ⟹   NP_036909
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21169,431,261 - 69,452,305 (+)NCBI
Rnor_6.01172,705,204 - 72,726,263 (+)NCBI
Rnor_5.01175,781,496 - 75,804,020 (+)NCBI
Celera1168,851,395 - 68,872,467 (+)RGD
Sequence:
RefSeq Acc Id: XM_039087998   ⟹   XP_038943926
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21169,431,283 - 69,452,306 (+)NCBI
RefSeq Acc Id: XM_039087999   ⟹   XP_038943927
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21169,431,303 - 69,452,306 (+)NCBI
RefSeq Acc Id: XM_039088000   ⟹   XP_038943928
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21169,431,281 - 69,452,306 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_036909   ⟸   NM_012777
- Peptide Label: precursor
- UniProtKB: M0R4S2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000064368   ⟸   ENSRNOT00000073330
RefSeq Acc Id: XP_038943928   ⟸   XM_039088000
- Peptide Label: isoform X2
- UniProtKB: M0R4S2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943926   ⟸   XM_039087998
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038943927   ⟸   XM_039087999
- Peptide Label: isoform X1
Protein Domains
Lipocln_cytosolic_FA-bd_dom

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P23593-F1-model_v2 AlphaFold P23593 1-189 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698223
Promoter ID:EPDNEW_R8746
Type:single initiation site
Name:Apod_1
Description:apolipoprotein D
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01172,705,203 - 72,705,263EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2137 AgrOrtholog
BioCyc Gene G2FUF-21055 BioCyc
Ensembl Genes ENSRNOG00000048273 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000064368 ENTREZGENE
  ENSRNOP00000064368.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000073330 ENTREZGENE
  ENSRNOT00000073330.3 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ApoD_vertbrte UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ApolipopD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calycin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lipocalin_ApoD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lipocalin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lipocln_cytosolic_FA-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:25239 UniProtKB/Swiss-Prot
NCBI Gene 25239 ENTREZGENE
Pfam Lipocalin_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Apod PhenoGen
PIRSF Lipocalin_ApoD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS APODVERTBRTE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  APOLIPOPROTD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE LIPOCALIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50814 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC205684
UniProt APOD_RAT UniProtKB/Swiss-Prot
  M0R4S2 ENTREZGENE, UniProtKB/TrEMBL
  P23593 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2003-04-09 Apod  apolipoprotein D    Apolipoprotein D  Name updated 629478 APPROVED
2002-06-10 Apod  Apolipoprotein D      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization localized to extracellular space 634662
gene_process may play a role in nerve repair after injury 634662
gene_regulation increased mRNA levels are detected in injured nerves 634662