Ccna2 (cyclin A2) - Rat Genome Database

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Gene: Ccna2 (cyclin A2) Rattus norvegicus
Analyze
Symbol: Ccna2
Name: cyclin A2
RGD ID: 621059
Description: Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity; protein domain specific binding activity; and protein kinase binding activity. Involved in several processes, including cellular response to nitric oxide; cellular response to organic cyclic compound; and response to peptide hormone. Located in nucleus. Biomarker of myocardial infarction. Orthologous to human CCNA2 (cyclin A2); PARTICIPATES IN G1/S transition pathway; p53 signaling pathway; cell cycle pathway, mitotic; INTERACTS WITH (-)-citrinin; (R)-mevalonic acid; 1-naphthyl isothiocyanate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cyclin-A2; MGC156527
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22119,427,239 - 119,433,645 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2119,426,089 - 119,433,577 (-)Ensembl
Rnor_6.02123,274,727 - 123,282,266 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2123,275,881 - 123,282,214 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02142,890,984 - 142,897,322 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42123,062,752 - 123,069,085 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12123,009,712 - 123,013,946 (-)NCBI
Celera2114,385,123 - 114,391,456 (-)NCBICelera
Cytogenetic Map2q25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-Tetrandrine  (ISO)
(-)-citrinin  (EXP)
(20R)-protopanaxadiol  (ISO)
(R)-mevalonic acid  (EXP)
(S)-(-)-perillyl alcohol  (ISO)
(S)-nicotine  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (EXP)
15-deoxy-Delta(12,14)-prostaglandin J2  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
19-Nor-17alpha-pregn-5(10)-en-20-yne-3alpha,17beta-diol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
2,4-diaminotoluene  (ISO)
2,6-di-tert-butyl-4-methylphenol  (ISO)
2-acetamidofluorene  (EXP)
2-methoxy-17beta-estradiol  (ISO)
2-trans,6-trans,10-trans-geranylgeranyl diphosphate  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP,ISO)
3,3',5-triiodo-L-thyronine  (EXP,ISO)
3,3,4,4,5,5,6,6,7,7,8,8,9,9,10,10,10-heptadecafluoro-1-decanol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-nitroquinoline N-oxide  (ISO)
4-nonylphenol  (EXP)
5-azacytidine  (ISO)
5-fluorouracil  (ISO)
6-O-methylguanine  (ISO)
6-propyl-2-thiouracil  (EXP)
9-cis-retinoic acid  (ISO)
acetamide  (EXP)
acetylsalicylic acid  (ISO)
acrylamide  (EXP)
actinomycin D  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (EXP,ISO)
aflatoxin M1  (ISO)
AICA ribonucleotide  (ISO)
all-trans-retinoic acid  (ISO)
allose  (ISO)
alpha-hexylcinnamaldehyde  (ISO)
alvocidib  (ISO)
ammonium chloride  (EXP)
amsacrine  (ISO)
andrographolide  (ISO)
androstane  (ISO)
anthracene  (ISO)
antimycin A  (ISO)
aphidicolin  (ISO)
aristolochic acid  (ISO)
arotinoid acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
Aspidin  (ISO)
atrazine  (ISO)
auraptene  (ISO)
azathioprine  (ISO)
baicalein  (ISO)
baicalin  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP,ISO)
beta-naphthoflavone  (EXP)
bicalutamide  (ISO)
biotin  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
Butylparaben  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
camptothecin  (ISO)
cannabidiol  (ISO)
capsaicin  (ISO)
carbon nanotube  (ISO)
cefaloridine  (EXP)
chlorpyrifos  (ISO)
choline  (ISO)
cicaprost  (ISO)
ciglitazone  (ISO)
cilostazol  (ISO)
Cinobufagin  (ISO)
cisplatin  (EXP,ISO)
clofibrate  (EXP,ISO)
cobalt dichloride  (EXP,ISO)
cocaine  (EXP,ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cryptolepine  (ISO)
CU-O LINKAGE  (ISO)
cucurbitacin I  (ISO)
Cuprizon  (EXP)
curcumin  (ISO)
cycloheximide  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
cypermethrin  (EXP)
daidzein  (ISO)
deguelin  (ISO)
desferrioxamine B  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
dibenzofuran  (EXP)
dibutyl phthalate  (ISO)
dichloroacetic acid  (ISO)
diethyl maleate  (EXP)
diethyl sulfate  (ISO)
diethylstilbestrol  (ISO)
dioscin  (ISO)
dioxygen  (EXP,ISO)
disodium selenite  (ISO)
disulfiram  (ISO)
doxazosin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
equol  (ISO)
erythromycin estolate  (EXP)
Estragole  (EXP)
etoposide  (ISO)
everolimus  (ISO)
farnesol  (ISO)
fenvalerate  (EXP)
fisetin  (ISO)
flumequine  (ISO)
fluoranthene  (ISO)
fluoxetine  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fraxetin  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gamma-linolenic acid  (ISO)
genistein  (ISO)
gentamycin  (EXP)
geraniol  (ISO)
glutathione  (ISO)
glycitein  (ISO)
glyphosate  (ISO)
GW 4064  (ISO)
homocysteine  (EXP)
hydrogen peroxide  (ISO)
hydroxyurea  (ISO)
Indeno[1,2,3-cd]pyrene  (ISO)
indole-3-methanol  (EXP)
indometacin  (ISO)
iodoacetic acid  (ISO)
irinotecan  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
ivermectin  (ISO)
ketamine  (EXP)
L-methionine  (ISO)
lamivudine  (ISO)
lapatinib  (ISO)
leflunomide  (ISO)
Licochalcone B  (ISO)
lidocaine  (ISO)
lipopolysaccharide  (ISO)
lithium chloride  (ISO)
lucanthone  (ISO)
luteolin  (ISO)
LY294002  (ISO)
malathion  (ISO)
mechlorethamine  (ISO)
MeIQx  (ISO)
menadione  (ISO)
methamphetamine  (EXP)
methcathinone  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
methylseleninic acid  (ISO)
metolachlor  (ISO)
mifepristone  (ISO)
ML-7  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
monoethyl phthalate  (ISO)
N-acetyl-L-cysteine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N-nitrosourea  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (EXP)
N-Nitrosopyrrolidine  (ISO)
naphthalene  (ISO)
nickel atom  (ISO)
nickel subsulfide  (EXP)
nicotine  (ISO)
nimesulide  (ISO)
nobiletin  (EXP,ISO)
nonanoic acid  (ISO)
ochratoxin A  (EXP,ISO)
oligomycin A  (ISO)
omacetaxine mepesuccinate  (ISO)
orlistat  (ISO)
ouabain  (ISO)
oxaliplatin  (EXP,ISO)
ozone  (ISO)
palbociclib  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
parathion  (ISO)
PCB138  (ISO)
Pentoxifylline  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
perillyl alcohol  (ISO)
phenanthrene  (ISO)
phenethyl isothiocyanate  (ISO)
phenformin  (EXP)
phenobarbital  (EXP,ISO)
phenol  (ISO)
PhIP  (EXP,ISO)
phorbol 13-acetate 12-myristate  (ISO)
phthalaldehyde  (ISO)
phytoestrogen  (ISO)
picoxystrobin  (ISO)
pinosylvin  (ISO)
pioglitazone  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
potassium dichromate  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
propanal  (ISO)
propiconazole  (ISO)
propylparaben  (ISO)
pyrene  (ISO)
pyrimidifen  (ISO)
pyrimidines  (ISO)
quartz  (EXP)
quercetin  (EXP,ISO)
quinazolines  (ISO)
raloxifene  (ISO)
resveratrol  (EXP,ISO)
ribavirin  (ISO)
ritonavir  (ISO)
romidepsin  (ISO)
rotenone  (EXP,ISO)
rubimaillin  (ISO)
Se-methyl-L-selenocysteine  (EXP)
Se-methylselenocysteine  (EXP)
senecionine  (EXP)
Senkirkine  (EXP)
silibinin  (ISO)
silicon dioxide  (ISO)
silver(1+) nitrate  (ISO)
simvastatin  (EXP,ISO)
sirolimus  (ISO)
sodium arsenite  (ISO)
sodium azide  (ISO)
sodium dichromate  (ISO)
Soman  (EXP)
sorafenib  (ISO)
SP2509  (ISO)
stilben-4-ol  (ISO)
stilbene-4,4'-diol  (ISO)
sulindac  (ISO)
sunitinib  (ISO)
tacrolimus hydrate  (ISO)
tamoxifen  (ISO)
tebufenpyrad  (ISO)
teriflunomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (ISO)
tetraphene  (EXP)
thalidomide  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
titanium dioxide  (EXP,ISO)
toluene 2,4-diisocyanate  (ISO)
topotecan  (EXP)
trabectedin  (ISO)
trans-pinosylvin  (ISO)
trans-stilbene-4,4'-diol  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (EXP,ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
Triptolide  (EXP)
troglitazone  (ISO)
tunicamycin  (ISO)
Tylophorine  (ISO)
valproic acid  (ISO)
verteporfin  (ISO)
vorinostat  (ISO)
wogonin  (ISO)
wortmannin  (ISO)
Y-27632  (ISO)
zaragozic acid A  (EXP,ISO)
zidovudine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Chen J, etal., Neurosci Lett. 2009 Apr 10;453(3):166-9. doi: 10.1016/j.neulet.2009.02.019. Epub 2009 Feb 13.
2. Deng H, etal., Exp Ther Med. 2014 Nov;8(5):1513-1517. Epub 2014 Aug 26.
3. Desdouets C, etal., Biochem Biophys Res Commun. 1999 Jul 22;261(1):118-22.
4. Fombonne J, etal., Endocrinology. 2007 May;148(5):2126-37. Epub 2007 Feb 15.
5. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Ge RS and Hardy MP, Endocrinology. 1997 Sep;138(9):3719-26.
7. Guo K, etal., Circulation. 1998 May 26;97(20):2066-72.
8. Iijima K, etal., Circulation. 2000 Feb 22;101(7):805-11.
9. Kalin TV, etal., Cancer Res. 2006 Feb 1;66(3):1712-20.
10. Kan Q, etal., Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4757-62. doi: 10.1073/pnas.0706392105. Epub 2008 Mar 20.
11. Karpurapu M, etal., J Biol Chem. 2008 Sep 26;283(39):26577-90. doi: 10.1074/jbc.M800423200. Epub 2008 Jul 29.
12. Katabami M, etal., J Biol Chem. 2005 Apr 29;280(17):16728-38. Epub 2005 Feb 28.
13. Lee CT, etal., PLoS Med. 2008 Jun 10;5(6):e117. doi: 10.1371/journal.pmed.0050117.
14. Li Y, etal., Am J Transl Res. 2013 Apr 19;5(3):327-35. Print 2013.
15. Liao C, etal., Int J Cancer. 2004 Feb 20;108(5):654-64.
16. Liao DJ, etal., Oncogene. 2000 Mar 2;19(10):1307-17.
17. Malumbres M and Barbacid M, Trends Biochem Sci. 2005 Nov;30(11):630-41. Epub 2005 Oct 19.
18. MGD data from the GO Consortium
19. Mitra SK and Swarup G, Exp Cell Res 2001 Oct 15;270(1):32-44.
20. NCBI rat LocusLink and RefSeq merged data July 26, 2002
21. Payraudeau V, etal., Mol Cell Endocrinol. 1998 Aug 25;143(1-2):107-16.
22. Pipeline to import KEGG annotations from KEGG into RGD
23. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
24. Ren S, etal., Int J Biochem Cell Biol. 2020 Aug;125:105777. doi: 10.1016/j.biocel.2020.105777. Epub 2020 Jun 3.
25. RGD automated data pipeline
26. RGD automated import pipeline for gene-chemical interactions
27. RGD comprehensive gene curation
28. Sherr CJ Cancer Res. 2000 Jul 15;60(14):3689-95.
29. Tseng JH, etal., J Surg Res. 2009 Jul 30.
30. Woo YJ, etal., Circulation. 2006 Jul 4;114(1 Suppl):I206-13.
31. Woo YJ, etal., J Thorac Cardiovasc Surg. 2007 Apr;133(4):927-33. Epub 2007 Feb 22.
Additional References at PubMed
PMID:1312467   PMID:7739547   PMID:8245034   PMID:8684460   PMID:8889548   PMID:9054499   PMID:11746698   PMID:11981756   PMID:12477932   PMID:15024385   PMID:15159393   PMID:16109376  
PMID:16137671   PMID:16288221   PMID:17234884   PMID:17347653   PMID:23791195   PMID:27414783  


Genomics

Comparative Map Data
Ccna2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22119,427,239 - 119,433,645 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2119,426,089 - 119,433,577 (-)Ensembl
Rnor_6.02123,274,727 - 123,282,266 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2123,275,881 - 123,282,214 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02142,890,984 - 142,897,322 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42123,062,752 - 123,069,085 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12123,009,712 - 123,013,946 (-)NCBI
Celera2114,385,123 - 114,391,456 (-)NCBICelera
Cytogenetic Map2q25NCBI
CCNA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384121,816,444 - 121,823,883 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl4121,816,444 - 121,823,883 (-)EnsemblGRCh38hg38GRCh38
GRCh374122,737,599 - 122,745,038 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364122,957,975 - 122,964,342 (-)NCBINCBI36hg18NCBI36
Build 344123,096,129 - 123,102,485NCBI
Celera4120,123,415 - 120,130,904 (-)NCBI
Cytogenetic Map4q27NCBI
HuRef4118,464,283 - 118,471,772 (-)NCBIHuRef
CHM1_14122,714,067 - 122,721,556 (-)NCBICHM1_1
T2T-CHM13v2.04125,120,496 - 125,127,935 (-)NCBI
Ccna2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39336,619,014 - 36,627,187 (-)NCBIGRCm39mm39
GRCm39 Ensembl336,619,014 - 36,626,299 (-)Ensembl
GRCm38336,564,865 - 36,573,038 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl336,564,865 - 36,572,150 (-)EnsemblGRCm38mm10GRCm38
MGSCv37336,463,787 - 36,470,918 (-)NCBIGRCm37mm9NCBIm37
MGSCv36336,756,414 - 36,763,490 (-)NCBImm8
Celera336,449,044 - 36,457,213 (-)NCBICelera
Cytogenetic Map3BNCBI
cM Map317.67NCBI
Ccna2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542818,726,062 - 18,732,211 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542818,725,969 - 18,732,478 (+)NCBIChiLan1.0ChiLan1.0
CCNA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14125,153,810 - 125,161,370 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4125,153,810 - 125,161,302 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04114,016,917 - 114,024,816 (-)NCBIMhudiblu_PPA_v0panPan3
CCNA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11918,317,866 - 18,324,592 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1918,318,004 - 18,323,691 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1918,534,627 - 18,544,698 (+)NCBI
ROS_Cfam_1.01918,436,112 - 18,446,091 (+)NCBI
ROS_Cfam_1.0 Ensembl1918,436,169 - 18,442,776 (+)Ensembl
UMICH_Zoey_3.11918,387,227 - 18,397,254 (+)NCBI
UNSW_CanFamBas_1.01918,668,909 - 18,678,936 (+)NCBI
UU_Cfam_GSD_1.01919,144,640 - 19,154,711 (+)NCBI
Ccna2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530166,040,643 - 66,046,184 (+)NCBI
SpeTri2.0NW_0049366621,073,460 - 1,079,136 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.18102,260,346 - 102,266,274 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28109,455,845 - 109,461,772 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCNA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1769,092,410 - 69,100,191 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl769,093,543 - 69,099,497 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603748,053,566 - 48,060,924 (-)NCBIVero_WHO_p1.0
Ccna2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247772,097,002 - 2,104,244 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
PMC317048P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22119,429,240 - 119,429,989 (+)MAPPERmRatBN7.2
Rnor_6.02123,277,883 - 123,278,631NCBIRnor6.0
Rnor_5.02142,892,986 - 142,893,734UniSTSRnor5.0
RGSC_v3.42123,064,754 - 123,065,502UniSTSRGSC3.4
Celera2114,387,125 - 114,387,873UniSTS
Cytogenetic Map2q25UniSTS
RH134560  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22119,427,610 - 119,428,416 (+)MAPPERmRatBN7.2
Rnor_6.02123,276,253 - 123,277,058NCBIRnor6.0
Rnor_5.02142,891,356 - 142,892,161UniSTSRnor5.0
RGSC_v3.42123,063,124 - 123,063,929UniSTSRGSC3.4
Celera2114,385,495 - 114,386,300UniSTS
RH 3.4 Map2665.0UniSTS
Cytogenetic Map2q25UniSTS
PMC207566P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22119,432,560 - 119,433,414 (+)MAPPERmRatBN7.2
Rnor_6.02123,281,203 - 123,282,056NCBIRnor6.0
Rnor_5.02142,896,306 - 142,897,159UniSTSRnor5.0
RGSC_v3.42123,068,074 - 123,068,927UniSTSRGSC3.4
Celera2114,390,445 - 114,391,298UniSTS
Cytogenetic Map2q25UniSTS
PMC207566P5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22119,433,543 - 119,433,712 (+)MAPPERmRatBN7.2
Rnor_6.02123,282,186 - 123,282,354NCBIRnor6.0
Rnor_5.02142,897,289 - 142,897,457UniSTSRnor5.0
RGSC_v3.42123,069,057 - 123,069,225UniSTSRGSC3.4
Celera2114,391,428 - 114,391,596UniSTS
Cytogenetic Map2q25UniSTS
PMC212738P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2535,477,189 - 35,477,365 (+)MAPPERmRatBN7.2
mRatBN7.22119,427,975 - 119,428,468 (+)MAPPERmRatBN7.2
Rnor_6.02123,276,618 - 123,277,110NCBIRnor6.0
Rnor_6.0536,073,353 - 36,073,528NCBIRnor6.0
Rnor_5.0540,726,097 - 40,726,272UniSTSRnor5.0
Rnor_5.02142,891,721 - 142,892,213UniSTSRnor5.0
RGSC_v3.42123,063,489 - 123,063,981UniSTSRGSC3.4
RGSC_v3.4536,674,479 - 36,674,654UniSTSRGSC3.4
Celera534,490,502 - 34,490,677UniSTS
Celera2114,385,860 - 114,386,352UniSTS
Cytogenetic Map2q25UniSTS
PMC138456P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22119,432,458 - 119,432,576 (+)MAPPERmRatBN7.2
Rnor_6.02123,281,101 - 123,281,218NCBIRnor6.0
Rnor_5.02142,896,204 - 142,896,321UniSTSRnor5.0
RGSC_v3.42123,067,972 - 123,068,089UniSTSRGSC3.4
Celera2114,390,343 - 114,390,460UniSTS
Cytogenetic Map2q25UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)259134147127460910Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)276539322150540526Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)278665616143657569Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
61392Bp6Blood pressure QTL 67arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)280270434125270434Rat
1598865Bp296Blood pressure QTL 2962.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)281018907126018907Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)282345893130923501Rat
7207808Bmd89Bone mineral density QTL 894.1femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)288862519133862519Rat
2300165Bmd49Bone mineral density QTL 494.80.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)288862519133862519Rat
2300170Bmd45Bone mineral density QTL 4512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
2300185Bmd46Bone mineral density QTL 468.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
1598862Glom9Glomerulus QTL 93.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)292337601137337601Rat
1598863Cm65Cardiac mass QTL 652.3heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)292337601137337601Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat
8662836Vetf8Vascular elastic tissue fragility QTL 80.66thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2104559726149559726Rat
1581552Pur12Proteinuria QTL 125.190.0009total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)2112103657148076632Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1354594Despr10Despair related QTL 100.00000249locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)2114654253159654253Rat
1359035Bp276Blood pressure QTL 276arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527143657569Rat
1359035Bp276Blood pressure QTL 276arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527143657569Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527185876470Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
5135226Leukc2Leukocyte quantity QTL 2eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)2118111229149559726Rat
1582257Gluco21Glucose level QTL 213.10.0035blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2118111229157142209Rat
738007Anxrr7Anxiety related response QTL 74.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2118189491163189491Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:43
Interacting mature miRNAs:47
Transcripts:ENSRNOT00000021156
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 26 36 26 19 26 1 1 49 21 30 1 1
Low 15 20 14 14 7 9 25 14 11 10 7
Below cutoff 2 1 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000021156   ⟹   ENSRNOP00000021156
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2119,427,335 - 119,433,577 (-)Ensembl
Rnor_6.0 Ensembl2123,275,881 - 123,282,214 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079745   ⟹   ENSRNOP00000069674
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2119,426,089 - 119,433,551 (-)Ensembl
Rnor_6.0 Ensembl2123,275,883 - 123,281,856 (-)Ensembl
RefSeq Acc Id: NM_053702   ⟹   NP_446154
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22119,427,239 - 119,433,572 (-)NCBI
Rnor_6.02123,275,881 - 123,282,214 (-)NCBI
Rnor_5.02142,890,984 - 142,897,322 (-)NCBI
RGSC_v3.42123,062,752 - 123,069,085 (-)RGD
Celera2114,385,123 - 114,391,456 (-)RGD
Sequence:
RefSeq Acc Id: XM_006232266   ⟹   XP_006232328
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22119,427,326 - 119,433,577 (-)NCBI
Rnor_6.02123,274,727 - 123,282,219 (-)NCBI
Rnor_5.02142,890,984 - 142,897,322 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008760903   ⟹   XP_008759125
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22119,427,326 - 119,433,645 (-)NCBI
Rnor_6.02123,274,727 - 123,282,266 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_446154   ⟸   NM_053702
- UniProtKB: G3V802 (UniProtKB/TrEMBL),   Q91ZX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232328   ⟸   XM_006232266
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JVY9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759125   ⟸   XM_008760903
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000069674   ⟸   ENSRNOT00000079745
RefSeq Acc Id: ENSRNOP00000021156   ⟸   ENSRNOT00000021156
Protein Domains
Cyclin N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V802-F1-model_v2 AlphaFold G3V802 1-418 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691291
Promoter ID:EPDNEW_R1816
Type:initiation region
Name:Ccna2_1
Description:cyclin A2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02123,282,245 - 123,282,305EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621059 AgrOrtholog
BioCyc Gene G2FUF-53316 BioCyc
Ensembl Genes ENSRNOG00000015423 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000021156 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000069674 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021156 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000079745 ENTREZGENE, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8373429 IMAGE-MGC_LOAD
InterPro Cyclin UniProtKB/TrEMBL
  Cyclin-A_N UniProtKB/TrEMBL
  Cyclin-like UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin_C UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
KEGG Report rno:114494 UniProtKB/TrEMBL
MGC_CLONE MGC:156527 IMAGE-MGC_LOAD
NCBI Gene 114494 ENTREZGENE
PANTHER PTHR10177 UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
  Cyclin_N2 UniProtKB/TrEMBL
PharmGKB CCNA2 RGD
PhenoGen Ccna2 PhenoGen
PIRSF Cyclin_A_B_D_E UniProtKB/TrEMBL
PROSITE CYCLINS UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
  Cyclin_C UniProtKB/TrEMBL
Superfamily-SCOP Cyclin_like UniProtKB/TrEMBL
UniProt A0A0G2JVY9 ENTREZGENE, UniProtKB/TrEMBL
  A0JPK0_RAT UniProtKB/TrEMBL
  G3V802 ENTREZGENE, UniProtKB/TrEMBL
  Q91ZX8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Ccna2  cyclin A2      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Ccna2  cyclin A2      Symbol and Name status set to provisional 70820 PROVISIONAL