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Gene: Vim (vimentin) Rattus norvegicus
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Symbol: Vim
Name: vimentin
Description: Exhibits protein kinase binding activity and protein phosphatase 2A binding activity. Involved in several processes, including decidualization; regulation of neurogenesis; and response to vitamin D. Localizes to several cellular components, including the axon; cell body; and perinuclear region of cytoplasm. Biomarker of Chagas disease; cerebral infarction; hyperthyroidism; and nephrosis. Human ortholog(s) of this gene implicated in Behcet's disease; atherosclerosis; autoimmune hypersensitivity disease (multiple); cataract 30; and rheumatoid arthritis. Orthologous to human VIM (vimentin); PARTICIPATES IN cyclooxygenase mediated pathway of arachidonic acid metabolism; INTERACTS WITH (R)-carnitine; 1,3-dinitrobenzene; 1-naphthyl isothiocyanate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Orthologs:
Homo sapiens (human) : VIM (vimentin)  HGNC  Alliance
Mus musculus (house mouse) : Vim (vimentin)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vim (vimentin)
Pan paniscus (bonobo/pygmy chimpanzee) : VIM (vimentin)
Canis lupus familiaris (dog) : VIM (vimentin)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vim (vimentin)
Sus scrofa (pig) : VIM (vimentin)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01780,882,715 - 80,891,200 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1780,882,666 - 80,891,212 (+)Ensembl
Rnor_5.01782,500,898 - 82,509,383 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41787,847,280 - 87,855,763 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11787,858,112 - 87,866,596 (+)NCBI
Celera1776,037,845 - 76,046,329 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Vim
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 621646
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.