Fn1 (fibronectin 1) - Rat Genome Database

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Gene: Fn1 (fibronectin 1) Rattus norvegicus
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Symbol: Fn1
Name: fibronectin 1
RGD ID: 2624
Description: Exhibits mercury ion binding activity and protease binding activity. Involved in several processes, including cellular response to growth factor stimulus; cellular response to mercury ion; and cellular response to peptide. Localizes to basement membrane and extracellular space. Used to study diabetic angiopathy; hypertension; and renovascular hypertension. Biomarker of several diseases, including artery disease (multiple); calcium oxalate nephrolithiasis; iron deficiency anemia; membranoproliferative glomerulonephritis; and ureteral obstruction. Human ortholog(s) of this gene implicated in calcium oxalate nephrolithiasis and membranoproliferative glomerulonephritis. Orthologous to human FN1 (fibronectin 1); PARTICIPATES IN syndecan signaling pathway; cell-extracellular matrix signaling pathway; Entamoebiasis pathway; INTERACTS WITH (R)-lipoic acid; 1-(5-isoquinolinesulfonyl)-2-methylpiperazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: FIBNEC; fibronectin; fibronectin 2; fibronectin 3; FN; fn-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2973,196,044 - 73,264,695 (-)NCBI
Rnor_6.0 Ensembl978,900,103 - 78,969,078 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0978,900,111 - 78,969,018 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0978,674,437 - 78,743,423 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4970,702,181 - 70,771,155 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1970,849,162 - 70,918,137 (-)NCBI
Celera970,607,233 - 70,675,716 (-)NCBICelera
RH 3.4 Map9673.9RGD
Cytogenetic Map9q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
acute kidney failure  (IEP)
Acute Otitis Media  (ISO)
Animal Mammary Neoplasms  (ISO)
aortic valve insufficiency  (ISO)
brain disease  (ISO)
Breast Neoplasms  (ISO)
calcium oxalate nephrolithiasis  (IEP,ISO)
carcinoma  (ISO)
Cardiac Fibrosis  (IEP)
chronic kidney disease  (ISO)
COVID-19  (ISO)
Crohn's disease  (ISO)
diabetes mellitus  (ISO)
diabetic angiopathy  (IDA)
Diabetic Nephropathies  (IEP,ISO)
end stage renal disease  (ISO)
Experimental Diabetes Mellitus  (IEP)
Experimental Liver Cirrhosis  (IEP,IMP)
focal segmental glomerulosclerosis  (ISO)
genetic disease  (ISO)
glioblastoma  (ISO)
glomerulonephritis  (ISO)
Glomerulopathy with Giant Fibrillar Deposits  (ISO)
Hirschsprung's disease  (ISO)
hypertension  (IAGP,IEP,ISO)
IgA glomerulonephritis  (ISO)
iron deficiency anemia  (IEP)
Kidney Reperfusion Injury  (IEP)
Left Ventricular Hypertrophy  (ISO)
Liver Injury  (IEP)
Liver Reperfusion Injury  (IDA)
malignant mesothelioma  (ISO)
Mammary Neoplasms, Experimental  (ISO)
membranoproliferative glomerulonephritis  (IEP)
myocardial infarction  (IEP)
Neoplasm Invasiveness  (ISO)
Neoplastic Cell Transformation  (ISO)
Neurodevelopmental Disorders  (ISO)
osteoarthritis  (ISO)
pulmonary fibrosis  (ISO)
renal cell carcinoma  (ISO)
renal fibrosis  (ISO)
renovascular hypertension  (IDA)
severe acute respiratory syndrome  (ISO)
Spinal Cord Injuries  (ISO)
spondyloepimetaphyseal dysplasia, Strudwick type  (ISO)
spondylometaphyseal dysplasia  (ISO)
spondylometaphyseal dysplasia corner fracture type  (ISO)
Spontaneous Abortions  (ISO)
Staphylococcal Pneumonia  (IDA)
Sturge-Weber syndrome  (ISO)
submandibular gland disease  (IEP)
ureteral obstruction  (IEP,ISO)
urinary bladder cancer  (ISO)
VACTERL association  (IEP)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-alpha-tocopherol  (ISO)
(+)-catechin  (ISO)
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(R)-lipoic acid  (EXP)
(R)-noradrenaline  (ISO)
(S)-nicotine  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-(5-isoquinolinesulfonyl)-2-methylpiperazine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP,ISO)
2,2,2-tetramine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3-dimethoxynaphthalene-1,4-dione  (EXP)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4-dinitrotoluene  (EXP)
2-acetamidofluorene  (EXP)
2-amino-2-deoxy-D-glucopyranose  (EXP,ISO)
2-naphthylamine  (ISO)
2-nitrofluorene  (EXP)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP,ISO)
3-aminobenzamide  (EXP,ISO)
3-phenylprop-2-enal  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-phenylbutyric acid  (EXP)
5'-phosphopyridoxal-6-azobenzene-2,4-disulfonic acid  (ISO)
5-(1,4-diazepane-1-sulfonyl)isoquinoline  (EXP)
5-(2-methylpiperazine-1-sulfonyl)isoquinoline  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-chloro-7-iodoquinolin-8-ol  (ISO)
5-fluorouracil  (ISO)
6-chloro-2,3,4,9-tetrahydro-1H-carbazole-1-carboxamide  (EXP)
7,12-dimethyltetraphene  (EXP)
8-Br-cAMP  (ISO)
9-cis-retinoic acid  (EXP,ISO)
acetaldehyde  (EXP,ISO)
acetamide  (EXP)
acetone  (ISO)
acetylsalicylic acid  (EXP)
aconitine  (EXP)
acrolein  (ISO)
actinomycin D  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (EXP)
albuterol  (ISO)
aldehydo-D-glucosamine  (EXP,ISO)
aldehydo-D-glucose  (EXP,ISO)
all-trans-retinoic acid  (EXP,ISO)
all-trans-retinol  (ISO)
allopurinol  (ISO)
alpha-hexachlorocyclohexane  (EXP)
alpha-pinene  (ISO)
aluminium oxide  (ISO)
ammonium chloride  (EXP)
amphetamine  (EXP)
andrographolide  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
antirheumatic drug  (ISO)
apigenin  (ISO)
apocynin  (EXP,ISO)
arecoline  (ISO)
aripiprazole  (ISO)
aristolochic acid  (ISO)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
artesunate  (ISO)
asbestos  (ISO)
atrazine  (ISO)
bacitracin  (EXP)
baicalein  (ISO)
beclomethasone  (ISO)
benazepril  (EXP)
benzo[a]pyrene  (ISO)
berberine  (EXP)
beta-D-glucosamine  (EXP,ISO)
bexarotene  (EXP)
bezafibrate  (EXP)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bleomycin A2  (EXP,ISO)
boric acid  (ISO)
bosentan  (ISO)
bromobenzene  (EXP)
bromochloroacetic acid  (ISO)
brucine  (ISO)
bucladesine  (ISO)
butanal  (ISO)
butane  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (ISO)
cadmium selenide  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
carbonyl sulfide  (EXP)
carvedilol  (EXP)
celastrol  (ISO)
chelerythrine  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
chrysin  (ISO)
cisplatin  (EXP,ISO)
clofibrate  (EXP)
clofibric acid  (EXP)
Clofop  (EXP)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
crocidolite asbestos  (ISO)
curcumin  (EXP,ISO)
cyclosporin A  (ISO)
D-glucose  (EXP,ISO)
D-penicillamine  (EXP)
DDT  (ISO)
deoxynivalenol  (ISO)
desferrioxamine B  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
diazinon  (EXP)
dibenz[a,h]anthracene  (ISO)
dibenziodolium  (EXP,ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (EXP)
dimethylarsinous acid  (ISO)
diuron  (EXP)
dopamine  (EXP)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
ellagic acid  (EXP)
emodin  (EXP)
enalaprilat dihydrate  (EXP,ISO)
endosulfan  (EXP,ISO)
entinostat  (ISO)
eplerenone  (EXP)
eprosartan  (EXP)
esculetin  (EXP)
etacrynic acid  (ISO)
ethanol  (EXP,ISO)
farrerol  (EXP)
fasudil hydrochloride  (EXP)
fenamidone  (ISO)
fenofibrate  (EXP,ISO)
fenoldopam  (EXP)
flavonol  (ISO)
fluorescein 5-isothiocyanate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
folpet  (ISO)
formaldehyde  (ISO)
formoterol fumarate  (ISO)
furan  (EXP)
gallic acid  (EXP)
gamma-hexachlorocyclohexane  (EXP)
geldanamycin  (ISO)
genistein  (EXP,ISO)
gestodene  (ISO)
gingerol  (ISO)
glafenine  (EXP)
glucose  (EXP,ISO)
glutathione  (EXP)
glyphosate  (ISO)
heptachlor  (EXP,ISO)
hexachlorobenzene  (EXP)
Honokiol  (EXP,ISO)
hydrogen peroxide  (EXP,ISO)
hydroquinone  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
isoflavones  (EXP,ISO)
isopentane  (ISO)
isoprenaline  (EXP,ISO)
isotretinoin  (ISO)
kaempferol  (ISO)
L-ascorbic acid  (ISO)
Lasiocarpine  (ISO)
lead diacetate  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
linalool  (ISO)
lipoic acid  (EXP)
lipopolysaccharide  (EXP,ISO)
losartan  (EXP)
LY-2157299  (ISO)
LY294002  (ISO)
manganese(II) chloride  (EXP)
mangiferin  (EXP)
Manumycin A  (EXP)
masoprocol  (ISO)
medroxyprogesterone acetate  (ISO)
melamine  (ISO)
melatonin  (EXP)
melittin  (ISO)
mercury atom  (ISO)
mercury dibromide  (ISO)
mercury dichloride  (EXP)
mercury(0)  (ISO)
metformin  (EXP,ISO)
methamphetamine  (ISO)
methapyrilene  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylglyoxal  (EXP)
methylmercury chloride  (EXP,ISO)
methylseleninic acid  (ISO)
microcystin-LR  (ISO)
MK-2206  (EXP,ISO)
monocrotaline  (EXP)
morphine  (ISO)
myricetin  (EXP)
N,N-dimethylsphingosine  (EXP)
N-acetyl-L-cysteine  (EXP,ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methylformamide  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
nefazodone  (EXP)
nickel atom  (ISO)
nickel dichloride  (ISO)
nickel subsulfide  (EXP)
nickel sulfate  (ISO)
niclosamide  (ISO)
nicotine  (ISO)
nimesulide  (EXP)
nitrogen dioxide  (ISO)
notoginsenoside R1  (ISO)
obeticholic acid  (EXP)
ochratoxin A  (ISO)
olanzapine  (ISO)
organoselenium compound  (EXP)
ouabain  (ISO)
oxaliplatin  (EXP)
ozone  (EXP,ISO)
paclitaxel  (ISO)
Paeonol  (EXP)
paracetamol  (ISO)
paraquat  (EXP,ISO)
PCB138  (EXP,ISO)
pentane  (ISO)
pentane-2,3-dione  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP)
perindopril  (ISO)
phenobarbital  (EXP,ISO)
phenylephrine  (ISO)
phenylmercury acetate  (ISO)
phenytoin  (ISO)
PhIP  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
potassium iodide  (EXP)
prazosin  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
progesterone  (ISO)
propene  (ISO)
propiconazole  (ISO)
Propiverine  (EXP)
propranolol  (ISO)
pyridoxal 5'-phosphate  (EXP)
pyrrolidine dithiocarbamate  (ISO)
quartz  (ISO)
quercetin  (EXP,ISO)
raloxifene  (ISO)
reactive oxygen species  (EXP,ISO)
resveratrol  (EXP,ISO)
rosiglitazone  (EXP)
rosmarinic acid  (ISO)
rotenone  (EXP,ISO)
rutin  (EXP,ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP)
Salidroside  (EXP)
salubrinal  (EXP)
SB 203580  (EXP)
SB 431542  (ISO)
serpentine asbestos  (EXP,ISO)
sildenafil citrate  (ISO)
silicon dioxide  (EXP,ISO)
silver atom  (ISO)
silver(0)  (ISO)
simvastatin  (EXP,ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sodium dodecyl sulfate  (ISO)
sodium fluoride  (ISO)
sodium hydrogencarbonate  (EXP)
sorafenib  (ISO)
sorbinil  (ISO)
sphingosine 1-phosphate  (EXP)
SR 144528  (ISO)
staurosporine  (EXP)
streptozocin  (EXP,ISO)
styrene  (ISO)
succimer  (ISO)
sunitinib  (ISO)
superoxide  (EXP)
tacrolimus hydrate  (ISO)
tamoxifen  (ISO)
Tanshinone I  (EXP,ISO)
tauroursodeoxycholic acid  (EXP)
telmisartan  (EXP)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
tetraethylenepentamine  (ISO)
tetramethylpyrazine  (EXP,ISO)
thimerosal  (ISO)
thioacetamide  (EXP,ISO)
Tiron  (ISO)
titanium dioxide  (ISO)
toluene  (EXP,ISO)
topotecan  (EXP)
trandolapril  (EXP)
tributylstannane  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triptonide  (ISO)
Triton X-100  (ISO)
troglitazone  (ISO)
troleandomycin  (EXP)
Tungsten carbide  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (EXP,ISO)
venom  (ISO)
vincaleukoblastine  (ISO)
vinclozolin  (EXP)
vitamin D  (ISO)
vitamin E  (ISO)
Y-27632  (EXP,ISO)
zinc atom  (EXP,ISO)
zinc(0)  (EXP,ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
acute-phase response  (IEA)
angiogenesis  (IEA)
biological process involved in interaction with symbiont  (IEA,ISO)
blood coagulation, fibrin clot formation  (IBA)
calcium-independent cell-matrix adhesion  (IEA,ISO)
cell activation  (IMP)
cell adhesion  (IEA,ISO)
cell-matrix adhesion  (IBA,IMP,ISO)
cell-substrate junction assembly  (IBA,IEA,ISO)
cellular response to amyloid-beta  (IEP)
cellular response to angiotensin  (IEP)
cellular response to BMP stimulus  (IEP)
cellular response to glucose stimulus  (IEP)
cellular response to interleukin-1  (IMP)
cellular response to lipopolysaccharide  (IEP)
cellular response to mercury ion  (IDA)
cellular response to platelet-derived growth factor stimulus  (IEP)
cellular response to prostaglandin E stimulus  (IEP)
cellular response to transforming growth factor beta stimulus  (IEP)
cellular response to vascular endothelial growth factor stimulus  (IEP)
endodermal cell differentiation  (IEA,ISO)
extracellular matrix organization  (IMP)
glial cell migration  (IDA)
heart development  (IBA)
integrin activation  (IEA,ISO)
integrin-mediated signaling pathway  (IEA,ISO)
negative regulation of apoptotic process  (IMP)
negative regulation of collagen biosynthetic process  (IMP)
negative regulation of transforming growth factor beta production  (IEA,ISO)
nervous system development  (IBA)
neural crest cell migration involved in autonomic nervous system development  (ISO)
ossification  (TAS)
peptide cross-linking  (IEA,ISO)
platelet aggregation  (IBA)
positive regulation of axon extension  (IEA,ISO)
positive regulation of cell migration  (IMP)
positive regulation of cell population proliferation  (ISO)
positive regulation of chemotaxis  (IDA)
positive regulation of fibroblast proliferation  (IEA,ISO)
positive regulation of gene expression  (IEA,ISO)
positive regulation of peptidase activity  (IEA)
positive regulation of phosphatidylinositol 3-kinase signaling  (IEA,ISO)
positive regulation of substrate-dependent cell migration, cell attachment to substrate  (IEA,ISO)
regulation of cell shape  (IEA)
regulation of ERK1 and ERK2 cascade  (IEA,ISO)
regulation of gene expression  (IMP)
regulation of protein phosphorylation  (IEA,ISO)
response to activity  (IEP)
response to drug  (IEP)
response to glucocorticoid  (IEP)
response to iron ion  (IEP)
response to ischemia  (IEP)
response to ozone  (IEP)
response to wounding  (IEP)
substrate adhesion-dependent cell spreading  (IEA,ISO)
wound healing  (IEA,ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
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5. Arai H, etal., Biol Neonate. 2005;87(2):113-20. Epub 2004 Nov 11.
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22. GOA data from the GO Consortium
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40. McElroy MC, etal., Infect Immun. 2002 Jul;70(7):3865-73.
41. MGD data from the GO Consortium
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44. NCBI rat LocusLink and RefSeq merged data July 26, 2002
45. Nezi L, etal., Biol Chem 2002 Jan;383(1):167-76.
46. OMIM Disease Annotation Pipeline
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48. Online Mendelian Inheritance in Man, OMIM (TM).
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52. Pipeline to import KEGG annotations from KEGG into RGD
53. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
54. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
55. RGD automated import pipeline for gene-chemical interactions
56. Roy S, etal., Diabetes. 2003 May;52(5):1229-34.
57. Saball E, etal., Mol Cell Biochem 2001 Oct;226(1-2):67-75.
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Additional References at PubMed
PMID:1632457   PMID:2209468   PMID:3119323   PMID:3863113   PMID:3997886   PMID:6089177   PMID:7519849   PMID:8984825   PMID:9421166   PMID:9441684   PMID:9632774   PMID:10742111  
PMID:11511678   PMID:11792823   PMID:11914376   PMID:12021259   PMID:12160302   PMID:12167537   PMID:12421310   PMID:12847088   PMID:12867986   PMID:12879062   PMID:14587027   PMID:15065125  
PMID:15068706   PMID:15292204   PMID:15308636   PMID:15604136   PMID:15677465   PMID:15728191   PMID:16061471   PMID:16157329   PMID:16159961   PMID:16236823   PMID:16316526   PMID:16534777  
PMID:16572112   PMID:16677310   PMID:17021600   PMID:17252537   PMID:17609505   PMID:17715430   PMID:17849409   PMID:17914904   PMID:17953369   PMID:18042364   PMID:18160478   PMID:18379124  
PMID:18559979   PMID:19056867   PMID:19366727   PMID:19429745   PMID:19546347   PMID:19607919   PMID:19651211   PMID:19738201   PMID:19826086   PMID:19931242   PMID:20049771   PMID:20380796  
PMID:20541508   PMID:20551380   PMID:20810141   PMID:21098642   PMID:21099277   PMID:21141136   PMID:21276792   PMID:21586275   PMID:21613793   PMID:21940672   PMID:22516433   PMID:22759963  
PMID:22812390   PMID:22821713   PMID:22897220   PMID:22900368   PMID:22904348   PMID:22952693   PMID:22984613   PMID:23154389   PMID:23211306   PMID:23533145   PMID:23658023   PMID:23940049  
PMID:23979707   PMID:24006456   PMID:24191021   PMID:24658351   PMID:24691542   PMID:24752318   PMID:25028133   PMID:25192797   PMID:25375034   PMID:25538336   PMID:25674202   PMID:25834989  
PMID:26093969   PMID:26571399   PMID:26728369   PMID:27053343   PMID:27068509   PMID:27530924   PMID:27559042   PMID:27572112   PMID:28712960   PMID:29030641   PMID:30926678   PMID:31760535  


Genomics

Comparative Map Data
Fn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2973,196,044 - 73,264,695 (-)NCBI
Rnor_6.0 Ensembl978,900,103 - 78,969,078 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0978,900,111 - 78,969,018 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0978,674,437 - 78,743,423 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4970,702,181 - 70,771,155 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1970,849,162 - 70,918,137 (-)NCBI
Celera970,607,233 - 70,675,716 (-)NCBICelera
RH 3.4 Map9673.9RGD
Cytogenetic Map9q33NCBI
FN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2215,360,440 - 215,436,073 (-)EnsemblGRCh38hg38GRCh38
GRCh382215,360,862 - 215,436,167 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372216,225,588 - 216,300,791 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362215,933,422 - 216,009,036 (-)NCBINCBI36hg18NCBI36
Build 342216,050,686 - 216,126,297NCBI
Celera2209,994,808 - 210,070,377 (-)NCBI
Cytogenetic Map2q35NCBI
HuRef2208,082,209 - 208,158,070 (-)NCBIHuRef
CHM1_12216,231,063 - 216,306,652 (-)NCBICHM1_1
Fn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39171,624,632 - 71,692,439 (-)NCBIGRCm39mm39
GRCm39 Ensembl171,624,679 - 71,692,359 (-)Ensembl
GRCm38171,585,473 - 71,653,280 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl171,585,520 - 71,653,200 (-)EnsemblGRCm38mm10GRCm38
MGSCv37171,632,097 - 71,699,745 (-)NCBIGRCm37mm9NCBIm37
MGSCv36171,518,731 - 71,586,379 (-)NCBImm8
Celera172,141,007 - 72,208,976 (-)NCBICelera
Cytogenetic Map1C3NCBI
cM Map136.05NCBI
Fn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955457629,518 - 696,975 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955457629,599 - 694,948 (+)NCBIChiLan1.0ChiLan1.0
FN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B221,208,431 - 221,284,003 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B221,208,431 - 221,284,003 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B102,623,568 - 102,698,747 (-)NCBIMhudiblu_PPA_v0panPan3
FN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13722,456,854 - 22,522,410 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3722,420,428 - 22,523,123 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3723,283,410 - 23,349,813 (-)NCBI
ROS_Cfam_1.03722,479,930 - 22,546,207 (-)NCBI
UMICH_Zoey_3.13722,368,332 - 22,434,691 (-)NCBI
UNSW_CanFamBas_1.03722,319,732 - 22,386,105 (-)NCBI
UU_Cfam_GSD_1.03722,336,313 - 22,402,763 (-)NCBI
Fn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303170,852,488 - 170,917,088 (-)NCBI
SpeTri2.0NW_0049365861,708,803 - 1,773,372 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15117,658,099 - 117,731,014 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115117,658,158 - 117,737,145 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215130,357,895 - 130,430,785 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FN1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110101,177,867 - 101,254,613 (-)NCBI
ChlSab1.1 Ensembl10101,176,789 - 101,254,633 (-)Ensembl
Fn1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624765707,872 - 775,056 (+)NCBI

Position Markers
PMC151804P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2973,196,262 - 73,196,659 (+)MAPPER
Rnor_6.0978,900,332 - 78,900,728NCBIRnor6.0
Rnor_5.0978,674,658 - 78,675,054UniSTSRnor5.0
RGSC_v3.4970,702,400 - 70,702,796UniSTSRGSC3.4
Celera970,607,452 - 70,607,848UniSTS
Cytogenetic Map9q33UniSTS
FN1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2973,207,612 - 73,207,962 (+)MAPPER
Rnor_6.0978,911,682 - 78,912,031NCBIRnor6.0
Rnor_5.0978,686,008 - 78,686,357UniSTSRnor5.0
RGSC_v3.4970,713,750 - 70,714,099UniSTSRGSC3.4
Celera970,618,802 - 70,619,151UniSTS
Cytogenetic Map9q33UniSTS
RH127568  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2973,196,243 - 73,196,433 (+)MAPPER
Rnor_6.0978,900,313 - 78,900,502NCBIRnor6.0
Rnor_5.0978,674,639 - 78,674,828UniSTSRnor5.0
RGSC_v3.4970,702,381 - 70,702,570UniSTSRGSC3.4
Celera970,607,433 - 70,607,622UniSTS
RH 3.4 Map9677.79UniSTS
Cytogenetic Map9q33UniSTS
PMC151804P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2973,196,331 - 73,196,632 (+)MAPPER
Rnor_6.0978,900,401 - 78,900,701NCBIRnor6.0
Rnor_5.0978,674,727 - 78,675,027UniSTSRnor5.0
RGSC_v3.4970,702,469 - 70,702,769UniSTSRGSC3.4
Celera970,607,521 - 70,607,821UniSTS
Cytogenetic Map9q33UniSTS
RH139076  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2973,232,814 - 73,233,058 (+)MAPPER
Rnor_6.0978,936,868 - 78,937,111NCBIRnor6.0
Rnor_5.0978,711,194 - 78,711,437UniSTSRnor5.0
RGSC_v3.4970,738,950 - 70,739,193UniSTSRGSC3.4
Celera970,643,875 - 70,644,118UniSTS
RH 3.4 Map9670.0UniSTS
Cytogenetic Map9q33UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9105522293442944Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92569234292741406Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92748615588333183Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92907507983686404Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)929075079122095297Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)929466970107878528Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93764235182642351Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93764235182642351Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)94126103490024806Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94126103498606834Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)941261034102531865Rat
6903941Pur31Proteinuria QTL 310.036total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94657976991579769Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94657976991579769Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94695242783686153Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94724896594124663Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95417754299177542Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)96081029882732466Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)961186278106186278Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)96173092382890620Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)96173092382890620Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)96173092382890620Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)963270073107878387Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)966757444112943287Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96745166499920892Rat
1578757Pur6Proteinuria QTL 63.30.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96745166499920892Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)970241351115241351Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)970942881115942881Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:426
Count of miRNA genes:155
Interacting mature miRNAs:174
Transcripts:ENSRNOT00000019772, ENSRNOT00000057585
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 42 56 41 19 41 8 11 68 35 33 11 8
Low 1 1 6 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_019143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF061156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M11750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U75410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U82612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X05831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X05832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X05834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X15906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000019772   ⟹   ENSRNOP00000019772
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl978,900,113 - 78,969,013 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000057585   ⟹   ENSRNOP00000054395
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl978,900,103 - 78,969,078 (-)Ensembl
RefSeq Acc Id: NM_019143   ⟹   NP_062016
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2973,196,044 - 73,264,677 (-)NCBI
Rnor_6.0978,900,113 - 78,969,013 (-)NCBI
Rnor_5.0978,674,437 - 78,743,423 (-)NCBI
RGSC_v3.4970,702,181 - 70,771,155 (-)RGD
Celera970,607,233 - 70,675,716 (-)RGD
Sequence:
RefSeq Acc Id: XM_006245150   ⟹   XP_006245212
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2973,196,045 - 73,264,695 (-)NCBI
Rnor_6.0978,900,111 - 78,969,018 (-)NCBI
Rnor_5.0978,674,437 - 78,743,423 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245151   ⟹   XP_006245213
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2973,196,045 - 73,264,695 (-)NCBI
Rnor_6.0978,900,111 - 78,969,017 (-)NCBI
Rnor_5.0978,674,437 - 78,743,423 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245152   ⟹   XP_006245214
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2973,196,045 - 73,264,694 (-)NCBI
Rnor_6.0978,900,111 - 78,969,017 (-)NCBI
Rnor_5.0978,674,437 - 78,743,423 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245153   ⟹   XP_006245215
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2973,196,045 - 73,264,694 (-)NCBI
Rnor_6.0978,900,111 - 78,969,017 (-)NCBI
Rnor_5.0978,674,437 - 78,743,423 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245154   ⟹   XP_006245216
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2973,196,045 - 73,264,695 (-)NCBI
Rnor_6.0978,900,111 - 78,969,018 (-)NCBI
Rnor_5.0978,674,437 - 78,743,423 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245156   ⟹   XP_006245218
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2973,196,045 - 73,264,694 (-)NCBI
Rnor_6.0978,900,111 - 78,969,017 (-)NCBI
Rnor_5.0978,674,437 - 78,743,423 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245157   ⟹   XP_006245219
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2973,196,045 - 73,264,694 (-)NCBI
Rnor_6.0978,900,111 - 78,969,017 (-)NCBI
Rnor_5.0978,674,437 - 78,743,423 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245158   ⟹   XP_006245220
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2973,196,045 - 73,264,694 (-)NCBI
Rnor_6.0978,900,111 - 78,969,017 (-)NCBI
Rnor_5.0978,674,437 - 78,743,423 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245159   ⟹   XP_006245221
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2973,196,045 - 73,264,694 (-)NCBI
Rnor_6.0978,900,111 - 78,969,017 (-)NCBI
Rnor_5.0978,674,437 - 78,743,423 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596301   ⟹   XP_017451790
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2973,196,045 - 73,264,695 (-)NCBI
Rnor_6.0978,900,111 - 78,969,017 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039083090   ⟹   XP_038939018
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2973,196,045 - 73,264,695 (-)NCBI
Protein Sequences
Protein RefSeqs NP_062016 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245212 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245213 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245214 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245215 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245216 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245218 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245219 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245220 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245221 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451790 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939018 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41166 (Get FASTA)   NCBI Sequence Viewer  
  AAA41167 (Get FASTA)   NCBI Sequence Viewer  
  AAA41168 (Get FASTA)   NCBI Sequence Viewer  
  AAA41169 (Get FASTA)   NCBI Sequence Viewer  
  AAA41170 (Get FASTA)   NCBI Sequence Viewer  
  AAB19112 (Get FASTA)   NCBI Sequence Viewer  
  AAB40865 (Get FASTA)   NCBI Sequence Viewer  
  CAA29278 (Get FASTA)   NCBI Sequence Viewer  
  CAA29279 (Get FASTA)   NCBI Sequence Viewer  
  CAA29281 (Get FASTA)   NCBI Sequence Viewer  
  CAA34020 (Get FASTA)   NCBI Sequence Viewer  
  EDL75259 (Get FASTA)   NCBI Sequence Viewer  
  EDL75260 (Get FASTA)   NCBI Sequence Viewer  
  EDL75261 (Get FASTA)   NCBI Sequence Viewer  
  EDL75262 (Get FASTA)   NCBI Sequence Viewer  
  EDL75263 (Get FASTA)   NCBI Sequence Viewer  
  P04937 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_062016   ⟸   NM_019143
- Peptide Label: precursor
- UniProtKB: A0A096P6L8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245220   ⟸   XM_006245158
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006245215   ⟸   XM_006245153
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006245214   ⟸   XM_006245152
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006245213   ⟸   XM_006245151
- Peptide Label: isoform X2
- UniProtKB: F1LST1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245216   ⟸   XM_006245154
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006245212   ⟸   XM_006245150
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006245221   ⟸   XM_006245159
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006245219   ⟸   XM_006245157
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006245218   ⟸   XM_006245156
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017451790   ⟸   XM_017596301
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: ENSRNOP00000054395   ⟸   ENSRNOT00000057585
RefSeq Acc Id: ENSRNOP00000019772   ⟸   ENSRNOT00000019772
RefSeq Acc Id: XP_038939018   ⟸   XM_039083090
- Peptide Label: isoform X4
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696734
Promoter ID:EPDNEW_R7259
Type:multiple initiation site
Name:Fn1_1
Description:fibronectin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0978,969,014 - 78,969,074EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW