Il17rd (interleukin 17 receptor D)

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Gene: Il17rd (interleukin 17 receptor D) Rattus norvegicus

Analyze

Symbol:

Il17rd

Name:

interleukin 17 receptor D

RGD ID:

1565237

Description:

Predicted to enable interleukin-17 receptor activity. Predicted to be involved in negative regulation of epithelial to mesenchymal transition and negative regulation of transforming growth factor beta receptor signaling pathway. Predicted to be located in Golgi apparatus and nucleoplasm. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 18 with or without anosmia. Orthologous to human IL17RD (interleukin 17 receptor D); PARTICIPATES IN fibroblast growth factor signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-Tetrachlorodibenzofuran; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

interleukin-17 receptor D; LOC498576; RGD1565237; similar to transmembrane protein

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	IL17RD (interleukin 17 receptor D)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Il17rd (interleukin 17 receptor D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Il17rd (interleukin 17 receptor D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	IL17RD (interleukin 17 receptor D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	IL17RD (interleukin 17 receptor D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Il17rd (interleukin 17 receptor D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	IL17RD (interleukin 17 receptor D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	IL17RD (interleukin 17 receptor D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Il17rd (interleukin 17 receptor D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	IL17RD (interleukin 17 receptor D)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Il17rd (interleukin 17 receptor D)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	il17rd (interleukin 17 receptor D)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ilcr-1	Alliance	DIOPT (PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	2,228,467 - 2,295,126 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	2,228,287 - 2,292,556 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	2,235,197 - 2,296,128 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	16	3,380,882 - 3,441,821 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	16	2,241,373 - 2,302,260 (+)	NCBI	Rnor_WKY
Rnor_6.0	16	2,670,471 - 2,737,271 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	2,670,618 - 2,731,808 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	2,642,868 - 2,709,804 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	2,291,838 - 2,354,927 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	2,194,794 - 2,255,588 (+)	NCBI		Celera
Cytogenetic Map	16	p16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenoid cystic carcinoma (ISO)

arteriovenous malformations of the brain (ISO)

Brain Injuries (ISO)

Delayed Puberty (ISO)

genetic disease (ISO)

hypogonadism (ISO)

hypogonadotropic hypogonadism 18 with or without anosmia (ISO)

Prostatic Neoplasms (ISO)

Pyruvate Dehydrogenase E1-Beta Deficiency (ISO)

septooptic dysplasia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-sulfonyldiphenol (ISO)

7,12-dimethyltetraphene (ISO)

acetamide (EXP)

aflatoxin B1 (EXP)

antirheumatic drug (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bleomycin A2 (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

crocidolite asbestos (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

flusilazole (ISO)

fulvestrant (ISO)

gentamycin (EXP)

Heliotrine (EXP)

hexaconazole (ISO)

hydrogen peroxide (ISO)

isoprenaline (ISO)

Lasiocarpine (EXP)

lipopolysaccharide (ISO)

methapyrilene (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-Nitrosopyrrolidine (ISO)

nickel atom (ISO)

ozone (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

progesterone (ISO)

SB 431542 (ISO)

senecionine (EXP)

silver atom (ISO)

silver(0) (ISO)

tamibarotene (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triadimefon (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cytokine-mediated signaling pathway (IEA)

negative regulation of epithelial to mesenchymal transition (ISO)

negative regulation of transforming growth factor beta receptor signaling pathway (ISO)

Cellular Component

Golgi apparatus (IEA,ISO)

Golgi apparatus (ISO)

membrane (IEA)

nucleoplasm (IEA,ISO)

Molecular Function

interleukin-17 receptor activity (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

fibroblast growth factor signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17980404	PMID:25378394	PMID:32963355

Genomics

Comparative Map Data

Il17rd
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	2,228,467 - 2,295,126 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	2,228,287 - 2,292,556 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	2,235,197 - 2,296,128 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	16	3,380,882 - 3,441,821 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	16	2,241,373 - 2,302,260 (+)	NCBI	Rnor_WKY
Rnor_6.0	16	2,670,471 - 2,737,271 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	2,670,618 - 2,731,808 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	2,642,868 - 2,709,804 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	2,291,838 - 2,354,927 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	2,194,794 - 2,255,588 (+)	NCBI		Celera
Cytogenetic Map	16	p16	NCBI

IL17RD
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	57,089,982 - 57,170,317 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	3	57,089,982 - 57,170,306 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	57,124,010 - 57,204,345 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	57,099,050 - 57,179,374 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	57,103,317 - 57,179,353	NCBI
Celera	3	57,089,588 - 57,164,961 (-)	NCBI		Celera
Cytogenetic Map	3	p14.3	NCBI
HuRef	3	57,172,083 - 57,248,123 (-)	NCBI		HuRef
CHM1_1	3	57,074,359 - 57,149,632 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	57,130,265 - 57,210,589 (-)	NCBI		T2T-CHM13v2.0

Il17rd
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	26,760,921 - 26,829,243 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	26,760,898 - 26,829,243 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	27,038,964 - 27,107,286 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	27,038,941 - 27,107,286 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	27,852,187 - 27,920,472 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	25,865,966 - 25,929,393 (+)	NCBI		MGSCv36	mm8
Celera	14	23,308,506 - 23,339,406 (+)	NCBI		Celera
Cytogenetic Map	14	A3	NCBI

Il17rd
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955430	6,848,820 - 6,898,704 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955430	6,842,756 - 6,873,195 (-)	NCBI	ChiLan1.0	ChiLan1.0

IL17RD
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	58,234,422 - 58,309,480 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	58,240,835 - 58,309,409 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	57,023,622 - 57,098,869 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

IL17RD
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	33,240,728 - 33,306,727 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	33,240,767 - 33,303,404 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	33,168,071 - 33,234,132 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	33,512,962 - 33,579,003 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	33,513,011 - 33,579,087 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	32,961,714 - 33,027,878 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	33,320,255 - 33,386,452 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	33,491,831 - 33,557,800 (+)	NCBI		UU_Cfam_GSD_1.0

Il17rd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	174,303,076 - 174,369,286 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	7,447,292 - 7,507,830 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936473	7,447,292 - 7,507,819 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IL17RD
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	38,939,316 - 39,006,690 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	38,935,631 - 39,006,721 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	42,822,716 - 42,917,594 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

IL17RD
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	18,416,143 - 18,489,855 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	18,416,443 - 18,434,271 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	148,380,962 - 148,449,510 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Il17rd
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624822	150,992 - 214,107 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624822	150,955 - 219,939 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Il17rd
233 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	59
Count of miRNA genes:	55
Interacting mature miRNAs:	59
Transcripts:	ENSRNOT00000030102
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2325838	Bp347	Blood pressure QTL 347		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	1	3080679	Rat
1357403	Slep4	Serum leptin concentration QTL 4	3.91		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	9639137	Rat
1600369	Hcas8	Hepatocarcinoma susceptibility QTL 8			liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	16	1	22477621	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	26727669	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	26727669	Rat
1582235	Insul8	Insulin level QTL 8	3.3	0.0063	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	16	1	26727669	Rat
9590151	Scort8	Serum corticosterone level QTL 8	8.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	16	1	30836262	Rat
2302380	Slep6	Serum leptin concentration QTL 6	3.36		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	32139025	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33418960	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39533930	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39533930	Rat
631561	Hcuc2	Hepatic copper content QTL 2	2.8		liver copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	39533949	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	1	43534949	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1	44588133	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	44977551	Rat
1549842	Bp248	Blood pressure QTL 248		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	380245	2995463	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	832236	46053497	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat
12903278	Am16	Aortic mass QTL 16		0.019	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	16	832380	2995225	Rat
12903279	Cm115	Cardiac mass QTL 115		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	16	832380	2995225	Rat
12903281	Cm116	Cardiac mass QTL 116		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	16	832380	2995225	Rat
12903952	Cm117	Cardiac mass QTL 117		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	16	832380	2995225	Rat
12903954	Bw186	Body weight QTL 186		0.011	body mass (VT:0001259)	body weight (CMO:0000012)	16	832380	2995225	Rat
2301404	Bp321	Blood pressure QTL 321		0.05	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	832380	2995225	Rat
12903955	Kidm69	Kidney mass QTL 69		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	16	832380	4227609	Rat

Markers in Region

D16Chm71

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	2,244,398 - 2,244,647 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	2,686,201 - 2,686,449	NCBI	Rnor6.0
Rnor_5.0	16	2,658,624 - 2,658,872	UniSTS	Rnor5.0
RGSC_v3.4	16	2,308,961 - 2,309,209	UniSTS	RGSC3.4
Celera	16	2,210,566 - 2,210,814	UniSTS
Cytogenetic Map	16	p16	UniSTS

D16Chm47

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	2,236,846 - 2,237,044 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	2,678,664 - 2,678,861	NCBI	Rnor6.0
Rnor_5.0	16	2,651,199 - 2,651,396	UniSTS	Rnor5.0
RGSC_v3.4	16	2,300,178 - 2,300,375	UniSTS	RGSC3.4
Celera	16	2,203,137 - 2,203,334	UniSTS
Cytogenetic Map	16	p16	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			2	2		2			16	6	21	4
Low	1	37	19	9	7	9	8	9	58	29	19	7	8
Below cutoff	2	5	35	29	12	29		2			1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001411766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000030102 ⟹ ENSRNOP00000031556

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	2,228,287 - 2,292,556 (+)	Ensembl
Rnor_6.0 Ensembl	16	2,670,618 - 2,731,610 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000077117 ⟹ ENSRNOP00000072379

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	2,228,326 - 2,292,556 (+)	Ensembl
Rnor_6.0 Ensembl	16	2,706,428 - 2,731,808 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000112964 ⟹ ENSRNOP00000089558

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	2,228,287 - 2,275,843 (+)	Ensembl

RefSeq Acc Id:

NM_001191937 ⟹ NP_001178866

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	2,228,505 - 2,289,461 (+)	NCBI
Rnor_6.0	16	2,670,618 - 2,731,610 (+)	NCBI
Rnor_5.0	16	2,642,868 - 2,709,804 (+)	NCBI
Celera	16	2,194,794 - 2,255,588 (+)	NCBI

Sequence:

show sequence

ATGGCCCCGTGGCTGCAGCTCTGCTCCTTCTTCTTCACTGTCAACGCCTGCCTCAACGGCTCGC
AGCTGGCAGTGGCCGCGGGCGGCTCGGGCCGCGCGAGAGGCGCGGACACCTGTGGCTGGAGGGG
AGTGGGGCCGGCCAGCAGAAACAGCGGGCTGTACAATATCACCTTCAGATATGACAACTGTACC
ACCTACTTGAGTCCCGTCGGGAAGCACATGATTGCCGATGCTCAGAACATCACCATTAGCCAGT
ATGCTTGCAATGACCAAGTGGCAGTCACCATTCTTTGGTCCCCAGGGGCCCTTGGCATTGAATT
CCTGAAAGGATTCCGAGTAATCCTGGAGGAGCTGAGGTCGGAAGGAAGACTGTGCCAACAACTG
GTTCTGAAGGACCCAAAACAACTCAACAGCAGCTTTAAAAGAACTGGAATGGAATCTCAGCCTT
TCCTGAATATGAAATTTGAAACGGATTACTTTGTAAAGATTGTCCCTTTCCCTTCCATTAAAAA
TGAAAGCGATTACCATCCCTTCTTCTTCAGGACACGAGCCTGTGACCTCTTGTTACAACCTGAC
AACTTGGCCTGTAAGCCCTTCTGGAAGCCTCGGAACCTGAATATCACCCAGTACGGTTCCGACA
TGCAAGTGTCCTTCCACCATGCACCGCAGAACTTTGGCTTCCGTGGCTTTCATGTTCACTATAA
ACTCAAGCACGAAGGCCCCTTCAGACGGAGGACTTGCAGGCAGGACCAGAATACAGAGACTACC
AGCTGCCTCCTTCAAAATGTTTCTCCAGGGGATTATGTCATTGAGCTGGTGGACGACAGCAACA
CCACCAGGAAGGCTGCTCAGTATGTGGTGAAGCCAGTGCAGTCTCCCTGGGCTGGACCCATCAG
AGCTGTGGCCATCACCGTGCCTCTGGTTGTCATATCCGCATTCGCAACACTCTTCACTGTGATG
TGCAGAAAGAAGCAACAAGAAAATATATATTCACATTTAGATGAAGAAAGCCCTGAGTCCTCCA
CATACGCTGCAGTTCTCCCCAGAGACAGGCTCCGGCCTCGGCCCAAGGTCTTCCTCTGCTATTC
TAGTAAAGACGGCCAGAATCACATGAACGTGGTCCAGTGTTTCGCCTACTTCCTACAGGAATTC
TGTGGATGTGAGGTGGCTCTGGACCTGTGGGAAGATTTCAGCCACTGCATAGAGGGCCAGAGAG
AATGGGTCATTCAGAAGATCCATGAGTCCCAGTTCATCATTGTCGTGTGCTCCAAAGGCATGAA
GTACTTTGTAGATAAGAAGAGCTACAGACACAAAGGAGGCAGTCGTGGCGGCACGGGGCAAGGA
GAGCTCTTCCTAGTGGCCGTGGCAGCCATTGCTGAGAAGCTCCGTCAGGCCAAGCAGAGCTCAT
CTGCGGCACTGAGCAAGTTCATCACCGTCTACTTTGATTATTCCTGTGAAGGGGATGTCCCCTG
TACCCTGGACCTGAGCACCAAATACAAGCTCATGGACAACCTTCCTGAGCTCTGTTCCCATCTA
CACTCAGGAGAACAGGAGGAGCTGGGCCAGCACCCAGGACACAGCAGCAGAAGGAACTACTTTC
GGAGCAAAGCTGGCCGCTCCCTGTATGTTGCCATTTGCAACATGCACCAGTTTATTGATGAGGA
ACCTGACTGGTTCGAGAAGCAGTTTGTACCCTTCCACCCGCCCCCTGTGCGCTACCAGGAGCCA
GTCCTGGAGAAGTTTGACTCAGGTTTGGTTTTAAATGATGTCATAAGCAAACCAGGGCCAGAAA
GTGACTTCTGCCTGAAAGTTGAGGCTTCTATACTTGGGGCCACTGGGCCAGCTGACTCTTACTC
ATACCTGGAGAATCAGCATGCAGGCCTGGACCAAGACACTGAGGCCCAGCCCGCCTGTGATGGT
GGCCCTGCCTTGCAGCCCCTGTTGCATGCAGTGAAAGCTGGCAGTCCTTCAGATATGCCACGGG
ACTCAGGCATATACGACTCCTCTGTGCCCTCATCAGAGCTGTCTCTGCCTCTGATGGAAGGACT
CTCCCCTGATCAGATAGAAACGTCTTCCCTGACGGAGAGCGTCTCTTCCTCCTCTGGCCTAGGT
GAGGAGGATCCCCCTACTTTCCCTTCCAAGCTCCTTGCCTCTGGGGTGTCCAAAGGAGAACATG
GTTTCCACAGCTACACTGATGAACTCCAAGCAGCTGCCCCTTTGTAA

hide sequence

RefSeq Acc Id:

XM_006252636 ⟹ XP_006252698

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	2,228,467 - 2,295,126 (+)	NCBI
Rnor_6.0	16	2,670,471 - 2,737,271 (+)	NCBI
Rnor_5.0	16	2,642,868 - 2,709,804 (+)	NCBI

Sequence:

show sequence

GCGGGGCGAAACACGGCAGCGCATGCTCGGTGAGGGCTGCCATCCTCTGCCGCCGCTGCCACCG
CCCACTCGGAGCTAGAGGGGCTAGAGAGCGAGCTGCAGGCTGCAACTTAGCGGAGACCAGCCCG
GCTGGGCGAGCGTACGGCCATGGCCCCGTGGCTGCAGCTCTGCTCCTTCTTCTTCACTGTCAAC
GCCTGCCTCAACGGCTCGCAGCTGGCAGTGGCCGCGGGCGGCTCGGGCCGCGCGAGAGGCGCGG
ACACCTGTGGCTGGAGGGGAGTGGGGCCGGCCAGCAGAAACAGCGGGCTGTACAATATCACCTT
CAGATATGACAACTGTACCACCTACTTGAGTCCCGTCGGGAAGCACATGATTGCCGATGCTCAG
AACATCACCATTAGCCAGTATGCTTGCAATGACCAAGTGGCAGTCACCATTCTTTGGTCCCCAG
GGGCCCTTGGCATTGAATTCCTGAAAGGATTCCGAGTAATCCTGGAGGAGCTGAGGTCGGAAGG
AAGACTGTGCCAACAACTGGTTCTGAAGGACCCAAAACAACTCAACAGCAGCTTTAAAAGAACT
GGAATGGAATCTCAGCCTTTCCTGAATATGAAATTTGAAACGGATTACTTTGTAAAGATTGTCC
CTTTCCCTTCCATTAAAAATGAAAGCGATTACCATCCCTTCTTCTTCAGGACACGAGCCTGTGA
CCTCTTGTTACAACCTGACAACTTGGCCTGTAAGCCCTTCTGGAAGCCTCGGAACCTGAATATC
ACCCAGTACGGTTCCGACATGCAAGTGTCCTTCCACCATGCACCGCAGAACTTTGGCTTCCGTG
GCTTTCATGTTCACTATAAACTCAAGCACGAAGGCCCCTTCAGACGGAGGACTTGCAGGCAGGA
CCAGAATACAGAGACTACCAGCTGCCTCCTTCAAAATGTTTCTCCAGGGGATTATGTCATTGAG
CTGGTGGACGACAGCAACACCACCAGGAAGGCTGCTCAGTATGTGGTGAAGCCAGTGCAGTCTC
CCTGGGCTGGACCCATCAGAGCTGTGGCCATCACCGTGCCTCTGGTTGTCATATCCGCATTCGC
AACACTCTTCACTGTGATGTGCAGAAAGAAGCAACAAGATGAAGAAAGCCCTGAGTCCTCCACA
TACGCTGCAGTTCTCCCCAGAGACAGGCTCCGGCCTCGGCCCAAGGTCTTCCTCTGCTATTCTA
GTAAAGACGGCCAGAATCACATGAACGTGGTCCAGTGTTTCGCCTACTTCCTACAGGAATTCTG
TGGATGTGAGGTGGCTCTGGACCTGTGGGAAGATTTCAGCCACTGCATAGAGGGCCAGAGAGAA
TGGGTCATTCAGAAGATCCATGAGTCCCAGTTCATCATTGTCGTGTGCTCCAAAGGCATGAAGT
ACTTTGTAGATAAGAAGAGCTACAGACACAAAGGAGGCAGTCGTGGCGGCACGGGGCAAGGAGA
GCTCTTCCTAGTGGCCGTGGCAGCCATTGCTGAGAAGCTCCGTCAGGCCAAGCAGAGCTCATCT
GCGGCACTGAGCAAGTTCATCACCGTCTACTTTGATTATTCCTGTGAAGGGGATGTCCCCTGTA
CCCTGGACCTGAGCACCAAATACAAGCTCATGGACAACCTTCCTGAGCTCTGTTCCCATCTACA
CTCAGGAGAACAGGAGGAGCTGGGCCAGCACCCAGGACACAGCAGCAGAAGGAACTACTTTCGG
AGCAAAGCTGGCCGCTCCCTGTATGTTGCCATTTGCAACATGCACCAGTTTATTGATGAGGAAC
CTGACTGGTTCGAGAAGCAGTTTGTACCCTTCCACCCGCCCCCTGTGCGCTACCAGGAGCCAGT
CCTGGAGAAGTTTGACTCAGGTTTGGTTTTAAATGATGTCATAAGCAAACCAGGGCCAGAAAGT
GACTTCTGCCTGAAAGTTGAGGCTTCTATACTTGGGGCCACTGGGCCAGCTGACTCTTACTCAT
ACCTGGAGAATCAGCATGCAGGCCTGGACCAAGACACTGAGGCCCAGCCCGCCTGTGATGGTGG
CCCTGCCTTGCAGCCCCTGTTGCATGCAGTGAAAGCTGGCAGTCCTTCAGATATGCCACGGGAC
TCAGGCATATACGACTCCTCTGTGCCCTCATCAGAGCTGTCTCTGCCTCTGATGGAAGGACTCT
CCCCTGATCAGATAGAAACGTCTTCCCTGACGGAGAGCGTCTCTTCCTCCTCTGGCCTAGGTGA
GGAGGATCCCCCTACTTTCCCTTCCAAGCTCCTTGCCTCTGGGGTGTCCAAAGGAGAACATGGT
TTCCACAGCTACACTGATGAACTCCAAGCAGCTGCCCCTTTGTAAGAGCACGGAAGAACGTAAA
TGTCGTCACTTTAGCTGCTGTTCTCGCTGGTTCCCCAGCTCCTCTGGTCGTACAGCCTGCTTGG
AGCTGAGGAGGGCTCGCACGAGGATATCTGGAATGAAATTCTGGCTAGCACTCAACCCGTTCTG
CTCCAGCCTTCTAACAGATACTTAGCGATGTCTCCCATTTCCCAGAAGCATATGGAACCCTGAA
AGGCATGTCCATTAGATCTGACCACAGCTGTCTGCGTGAGGTCCTTGCTTGGATTGGAGCCTAT
TCTGAGGGGTAGAACGGAAACAGGTAAAGAGAAACAGGAAAGCACCCGCACAGCCTGCTCTGGC
TTTACTTGAACTCTGCAAACTCTAACTTGGCTACTTAGACTCAAAACAATTTGTCAAGAGGGAA
AAGCCCGATTGACACTATTACAGTTACCCATGTCAAGTACCATCGGGACCCGGGCTGTGCTGCA
AGTGATGTTTCTGTCCATTTTGACGTGGAACTTACACTGTCCTGAGTGTTAAGAGAACTTTGAG
TCCAAGGTCCAGACAATGACTGAACGTCCATCCAGTCACTTTTTGTGAAACAACTCCCTCTATT
ACTGGGAAACATGGCCAACCAGGACGGAATCCTGTGGGTCCTGTGGAGCAGGCTGACCATCTTG
ACTGTTGTATGTGAAATGGGTTGATGAGTGTGCAGAAGGTGTCAGAACCTGGGTGTTTTCCCTG
CGTTGAAGTAGCCATCACGTGGGAGCCCTAGCCATCTGTTTCGTTTCCCTGGGATACATTTACT
GCTCTACCGTAGCTCGGGTGGTGACGGCTGGAAATGGAGGCCTGGTGTCCATTACCCAGCTGGG
CAGCAACACTATTGGAATTTGTGGCTGTTGCTGTGTCTTGAGCGTTAGAGAGGTCAGAATCCAC
TAATACACGACAGGGCACGGGAGACGGTGGCCAGTTAATCTGCTGGTTTTGACAAGTGACAAAC
CTCCTTTGCAGAAGGCTGAAAGGAGGAGATTTGTTACAAAAGTAAATGCTCTATTTTTTATGAA
TGAACCTTGTACAGACACTCTGTTCCCAAAGGTAAAGCATCTCTTCATGTCCCACATGTTAATG
AGATGTATATGATGATGTGTCTGTCCCCTCTGCGGAAACCCTCGTCCCTCGCCCCGGCGCGCTT
GGTGTGTGCATCCTTCTCCACTGTTATCATGGCTGCTGCTGGGTTTTGGCAGCCTGTCTTCTGT
CAGGGACTATTCATTTTTCCCATTCCCCCTCCAGCTTGGAGCAGCATTTAAGGGGTTGCCGAGG
AAGATCCCAAGGTCGGGTGTGGAGGGCTCAGGGGTTTTCCTTCTAAGCACCTTTTCCGTGGGGG
CAGGAGGGACACCTCAGTTCCTGCTGAGAAGAAGAAGCGGTTTGTGTGTCTTTTGGATGAAATC
ATCCTCATCCCCGCTCTGCACGGGCAGCTGGCAGCTTCTCAGGAGAACGTGCTCCTGTGTTCTC
TGGCAGAGAACAGAGCAGCTGCTCTGGGCAAGCGGTGAGCTGGTCTCACCAGGCATCTCAGCAG
AGGAGTTTGCACCGTATTATCACTGGAATCCACACTGGGCAGGCAGAGCTCCCACCTCCGCAAG
GCTCTCCTGGCCGTGCTCAGTCTTGGCATTCATTCTGTGAGGGAGATTGGTGGGCCTACATTGC
TAATGTATGACCGCTCCCTGGGAACATCATCAGAGAGGTTTTTTTTCCTCTTTTTAAATTGAGG
CCAAGAAATATTTTATGTCCCCCAAAGAGCCATTAGAAACCACATTTAGGATAGATACTCAGCT
TTGCATAGGGACTGTGAGGTCCCTGAGAGTGCCCAGGAGCAGCATGGGGCCTTGGGCTTAGCAT
TAGCTGGATCCTAGGCCCAGGCAGAGAGCTCACTGCTTGAATTCAGATGAGGAAACTGTAGGGA
AGCCATGTGAACCATGTATCTTGCTAGTCTGAAAAGTCAGGGTCAGGCGATGGTTTTTGTTTGT
ATTTAGCAGTTGGGATGCTTTTATTTTGACATACGGGAGCTTCTGATCAGACGACCCAGATTCT
AACATACCAGGCGATGAAACGACAGTAAGGTTGCTTAACCCAGAACGAGCTGATAGTGGGTGGA
ACAATATCTTTCGTCAGCCCCTTCCCCATACAACCTCATCATTGAGCCAGGAGTGAGAATTGCC
TTGCAGGTTAAGGCAAGGCGCCAGCTCCGAACAGAGCTGCAGTCTTTGACTCAGAATTGCCCGT
GGAATAGAGAAAGGTTCTGAGGAGGCACAGGCTTTTTGATGCTGTAGGGAAACAAGAGTTCAGG
GCTAAGAGTGAACCGTTTGTGGAGAAATAGACCAGGTCCACTGGAAGGGAGGCCAGGGCGCCAG
GAAACCAAGGAAGTTGTTGACCTGTGTTTATGGGTGTCCCACAGGTGCTTCTCATGTATGTGAC
TGGCTCAAAGGTGAATCAGAAACAAAGCTCACCTGCCCTTGAGGTCCCAATTTACCGTGTCATA
GTGGTGCATGTTGCTAATTTTCTTGACAACCTCAAGTGGTAGGTCCTCTGACTTTTATGTAAGT
AACTAAATAGGGAACTGCTCCCCCCAATGTGTGGGATTGCAGGAGTGCAGGAGCTTTTCAGAAG
GAACAGGGAAACTGTTATTCCTGGTGGTGAAATGGCACAAAAGAAAGGAAAATAGCAAGTCCTA
GCTACCTCAGCACAAGAGAACATTCTGCCCTTATTGGGAAAGGGTAGGCAACACCAATGTGAAG
GTTTCTAGTCTTTTTAAAAGTCCTCCATTGTTGGGGATGGTTGCTGGTAATTGGCAAAGTTTGT
GTTTTCTGGGGCATCAGTATACCCAGGCATAAGGAAAACGGTAACATAGCACCTAGAGGAGAGA
CAGTAGTGCCTGGTGGTGACTGGAGCAAACCAAGGCACCCTTGCCCAGCCTTCAGGGGTAGAGG
GCTTTCCAGATGCAGTATTTCCTGGGCTTCTGCTTTTCACAAAAAGCTGAAAGTGTCATTTTGA
AGCTGTTGATGTCTAGCATTGGCAAGACAGCTCAGTGAATAAAAGCACCTCTGGAACAAACCTG
GACAACGTAAGTTTAGTCCTGGAACCCACAGTGGAAGGAGTGAGGAATCCCTGTCCCAAAAGTT
GTGTTCTTTGGCTTCCTCATGCTGGCAGTGGCACTCGCAGATAGCCATGGCATGGCGTCACGTG
CATGCGTGCGTAAGAGAGAGCGTGCTTTCGTGTATCTGCAACACCAAAATCACACACAACCGAA
AAATAAGCCAAACGTTGCCAATCGAACTTTGGGAACTACTGAGGTGACCCAGGACCAACAGAAT
GTGTAGCTAGATCTACTTTGCCCAGCGGCTGCCAGTTTGTGACTTCCGCTTTGTAGGATGTGAA
ATGAAAACCACCCGCAGTAATAGCACGTATGTGGAGCCCTGGGAAGCGCTGTGCTAGCCCTATC
TATCCTCCAGAAAAATCATGCTCTCCCGATGATTTTGATTCTTAAAACAGGGTCTCTAGTAGCC
CAGGCTAGCCTTGAACTGCTGATACTTCCCTCTCTGATGTGTGCCATGCATAGCCTTAATATGA
TTCTGAATACGTTTTAAACATCTTGGTTGTGTCTTTTATTAGTGTCTCAAGAGAAAGGGAGGTC
AGCTGTTTTTGGTGGTGGTGGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTTGGAACTCTTT
AGACCAGGCTAGCCTCCAGCTCAGAGATGTGCCTGCCTCTGCCGCTGCCACCACATCCCCTTGT
TAATTTCAAAGTCAGATCTCTATCGTCCCATATTAAAAAACAGGCAGCAGTTGCATTTAAAAAC
CCCCAAGACTTATTTATAGCTTAGTTCTAATTATAGTCGTGGTTTTGTGTGTGGGTGCAATTCT
GAGCTCATGCCAAGGTGTTATTAGGAGAATTTATTTGGGGGCTACAGCAGAGGGTCTCCCAGAG
TGTCCTCACACTGGGTTTTGCCATCTTCCCGTCTCTGCAGTCTGGGACAGGCTCTTCTGGAGGA
ATGCTACAGGAGACAAAGAAAAGCTCTCCTACTGTCGAGATCCCAGGTGTCCCCGTGCTGTTTG
ACCACCCTTGTTATTATCGTCACATTTCCAGACTTTCCCAAGAGGGAAAGCTGGCCAAGGGAGA
GCCAGCAGTAAGTGGTTGGGTTCAGTTCCGGTTTTAGAACTTGGGGGCGAAGAAAGGCTGAGAT
CACCCAACACGATCCTCGGCTTGACCGGCTGCGCCTGAGTTGTTCCAGACGCACGGCTGTGGCT
GAGACTCTGGCTCTTCAGCCGAGGGGATTCTGTAACCTCCCTGCTAATCGGATGGTCCTTTGTA
TGTCTTCCTTGCAGAAATTCAAACCAGCTTTCTTTTGTCTACAGCGCAGAGGAGAAAGAACAGC
TGGTCACCTTCCCAGCATAGAAAACCACAGTGAGGTCATCCCCTGGTGGGCTCCCCCACCCCCA
GTAGTAAATAATCCCACCCACTTAAGGTCTTTCATAGCTCTTGTGCTCTGGGGGCTTAACGATT
TCCACCGTTCTTGGACTCCTCAGCCTCACGTTCAGTTTTGTTATCCGAATGACACCCATGCCTT
ATTCGCATCGGCGCCGCCTGACAGCCATGTTAGGATTACAGGGAGATTTGTACAGGCCTGCTGC
TCTCACTGCATAAAAGTATCATGGCACTTTAAACACGCTCATTCAGAACACCACTCGTTTTCTC
GATGGTAGTCCTTGCTGTTGTGGTTGCCCGGCAGGTGAACAGCTGGTGCTCTTTCCTGAGGCAT
CTAGTGCCTTCCTTTAATCTGAAGACGTTCTTCAGCACCTGTCCTGAGTGGCAGCTACCCCACA
CCCCAACCTTGGGTTCTATTTTTACCTCTCTCTGGACTTGCCTTTATTTTGTGAGCACTTCACC
AGAACCCCTGGCGAGGCGAGGCCAGAGTGCTAAGTGCCAGCTTCCCATTAGCTGTTGGGGACTA
ATTTCCAAACACCTTTGAATGCCTCAGGGAGGGCCTCTGGAGAACTCTGGCCAATCGTTGTCTT
TCCTGCCCCTTGGTTCATTCTTGATACTCACCTGGAATCACAGATCCCTCCAGGGCCTCTCCCT
CCTCCAGGGCTGTATCTCTCTCAGTTAAGCAGGCGTAGGGTTTGATACGATCACCAGACAGAAG
CAGTCATCCTGACTGGATAGATAGCTAATGTTTGTATCACATGGACTCGGGCAGGAAGGGAAGA
AGGAGCAGTTGCCCTGCATGGCTACCACTGGATTATACTCAGAGCAGTCATTTTGAGAGTAGCT
TTGCTTTTCGAGATTTGTTATTTTTTTTTTTTTACTGTGGAAGCTCCCATGTTAAGGAGGAAGG
CCCGCAGGCACAGCAAGGATTGGTGCCGTTGTTCTGTTTTGTCTCCTTTAAGTTTGTCCTTTCT
GGGATTTTTGGCAGAATGGTAAGCACTGACAGCCTGTAGCACTGTGCCATATTTTTACGTTGGA
GATCTTGGTGGTATATTGTGGTATATTTGACTGTATAAACTCTGTAAATAGATGATCATAAGTC
ATGACTGACATTTGTAAGATGTTTTTTTGTACCTTAGAGTTTCTACATCAAATAAAATGTTCTC
TTGTAAGCCT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001178866	(Get FASTA)	NCBI Sequence Viewer
	NP_001398695	(Get FASTA)	NCBI Sequence Viewer
	XP_006252698	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL75064	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001178866 ⟸ NM_001191937
- Peptide Label:	precursor
- UniProtKB:	D3ZGQ0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPWLQLCSFFFTVNACLNGSQLAVAAGGSGRARGADTCGWRGVGPASRNSGLYNITFRYDNCT TYLSPVGKHMIADAQNITISQYACNDQVAVTILWSPGALGIEFLKGFRVILEELRSEGRLCQQL VLKDPKQLNSSFKRTGMESQPFLNMKFETDYFVKIVPFPSIKNESDYHPFFFRTRACDLLLQPD NLACKPFWKPRNLNITQYGSDMQVSFHHAPQNFGFRGFHVHYKLKHEGPFRRRTCRQDQNTETT SCLLQNVSPGDYVIELVDDSNTTRKAAQYVVKPVQSPWAGPIRAVAITVPLVVISAFATLFTVM CRKKQQENIYSHLDEESPESSTYAAVLPRDRLRPRPKVFLCYSSKDGQNHMNVVQCFAYFLQEF CGCEVALDLWEDFSHCIEGQREWVIQKIHESQFIIVVCSKGMKYFVDKKSYRHKGGSRGGTGQG ELFLVAVAAIAEKLRQAKQSSSAALSKFITVYFDYSCEGDVPCTLDLSTKYKLMDNLPELCSHL HSGEQEELGQHPGHSSRRNYFRSKAGRSLYVAICNMHQFIDEEPDWFEKQFVPFHPPPVRYQEP VLEKFDSGLVLNDVISKPGPESDFCLKVEASILGATGPADSYSYLENQHAGLDQDTEAQPACDG GPALQPLLHAVKAGSPSDMPRDSGIYDSSVPSSELSLPLMEGLSPDQIETSSLTESVSSSSGLG EEDPPTFPSKLLASGVSKGEHGFHSYTDELQAAAPL hide sequence

RefSeq Acc Id:

XP_006252698 ⟸ XM_006252636

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAPWLQLCSFFFTVNACLNGSQLAVAAGGSGRARGADTCGWRGVGPASRNSGLYNITFRYDNCT
TYLSPVGKHMIADAQNITISQYACNDQVAVTILWSPGALGIEFLKGFRVILEELRSEGRLCQQL
VLKDPKQLNSSFKRTGMESQPFLNMKFETDYFVKIVPFPSIKNESDYHPFFFRTRACDLLLQPD
NLACKPFWKPRNLNITQYGSDMQVSFHHAPQNFGFRGFHVHYKLKHEGPFRRRTCRQDQNTETT
SCLLQNVSPGDYVIELVDDSNTTRKAAQYVVKPVQSPWAGPIRAVAITVPLVVISAFATLFTVM
CRKKQQDEESPESSTYAAVLPRDRLRPRPKVFLCYSSKDGQNHMNVVQCFAYFLQEFCGCEVAL
DLWEDFSHCIEGQREWVIQKIHESQFIIVVCSKGMKYFVDKKSYRHKGGSRGGTGQGELFLVAV
AAIAEKLRQAKQSSSAALSKFITVYFDYSCEGDVPCTLDLSTKYKLMDNLPELCSHLHSGEQEE
LGQHPGHSSRRNYFRSKAGRSLYVAICNMHQFIDEEPDWFEKQFVPFHPPPVRYQEPVLEKFDS
GLVLNDVISKPGPESDFCLKVEASILGATGPADSYSYLENQHAGLDQDTEAQPACDGGPALQPL
LHAVKAGSPSDMPRDSGIYDSSVPSSELSLPLMEGLSPDQIETSSLTESVSSSSGLGEEDPPTF
PSKLLASGVSKGEHGFHSYTDELQAAAPL

hide sequence

RefSeq Acc Id:

ENSRNOP00000072379 ⟸ ENSRNOT00000077117

RefSeq Acc Id:

ENSRNOP00000031556 ⟸ ENSRNOT00000030102

RefSeq Acc Id:

ENSRNOP00000089558 ⟸ ENSRNOT00000112964

Protein Domains

Interleukin 17 receptor D N-terminal SEFIR

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZGQ0-F1-model_v2	AlphaFold	D3ZGQ0	1-740	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699897

Promoter ID:

EPDNEW_R10421

Type:

multiple initiation site

Name:

Il17rd_1

Description:

interleukin 17 receptor D

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	2,670,538 - 2,670,598	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565237	AgrOrtholog
BioCyc Gene	G2FUF-12242	BioCyc
Ensembl Genes	ENSRNOG00000021966	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000031556	ENTREZGENE
	ENSRNOP00000031556.1	UniProtKB/TrEMBL
	ENSRNOP00000072379	ENTREZGENE
	ENSRNOP00000072379.2	UniProtKB/TrEMBL
	ENSRNOP00000089558.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000030102	ENTREZGENE
	ENSRNOT00000030102.3	UniProtKB/TrEMBL
	ENSRNOT00000077117	ENTREZGENE
	ENSRNOT00000077117.2	UniProtKB/TrEMBL
	ENSRNOT00000112964.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.11530	UniProtKB/TrEMBL
InterPro	IL-17_rcpt-like	UniProtKB/TrEMBL
	IL17R_D_N	UniProtKB/TrEMBL
	SEFIR	UniProtKB/TrEMBL
	Toll_tir_struct_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:498576	UniProtKB/TrEMBL
NCBI Gene	498576	ENTREZGENE
PANTHER	INTERLEUKIN-17 RECEPTOR D	UniProtKB/TrEMBL
	PTHR15583	UniProtKB/TrEMBL
Pfam	IL17R_D_N	UniProtKB/TrEMBL
	SEFIR	UniProtKB/TrEMBL
PhenoGen	Il17rd	PhenoGen
PROSITE	SEFIR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52200	UniProtKB/TrEMBL
UniProt	A0A0G2K2U4_RAT	UniProtKB/TrEMBL
	A0A8I6GI76_RAT	UniProtKB/TrEMBL
	D3ZGQ0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Il17rd	interleukin 17 receptor D	RGD1565237_predicted	similar to transmembrane protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1565237_predicted	similar to transmembrane protein (predicted)	LOC498576	similar to transmembrane protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498576	similar to transmembrane protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)