Cask (calcium/calmodulin dependent serine protein kinase) - Rat Genome Database
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Gene: Cask (calcium/calmodulin dependent serine protein kinase) Rattus norvegicus
Analyze
Symbol: Cask
Name: calcium/calmodulin dependent serine protein kinase
RGD ID: 62004
Description: Exhibits PDZ domain binding activity; neurexin family protein binding activity; and protein C-terminus binding activity. Involved in several processes, including nervous system development; positive regulation of insulin secretion; and protein localization to plasma membrane. Localizes to several cellular components, including apical dendrite; basolateral plasma membrane; and podocyte foot. Human ortholog(s) of this gene implicated in FG syndrome and syndromic X-linked intellectual disability Najm type. Orthologous to human CASK (calcium/calmodulin dependent serine protein kinase); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: calcium/calmodulin-dependent serine protein kinase; calcium/calmodulin-dependent serine protein kinase (MAGUK family); peripheral plasma membrane protein CASK
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X8,899,500 - 9,243,014 (+)NCBI
Rnor_6.0 EnsemblX9,815,652 - 10,156,155 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X9,815,652 - 10,156,155 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X10,614,514 - 10,954,635 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X20,910,960 - 21,250,869 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X20,964,277 - 21,304,187 (+)NCBI
CeleraX9,439,547 - 9,776,994 (+)NCBICelera
Cytogenetic MapXq12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Butz S, etal., Cell 1998 Sep 18;94(6):773-82.
2. Chao HW, etal., J Cell Biol. 2008 Jul 14;182(1):141-55. doi: 10.1083/jcb.200712094. Epub 2008 Jul 7.
3. Dimitratos SD, etal., Genomics 1998 Jul 15;51(2):308-9.
4. Fallon L, etal., J Biol Chem. 2002 Jan 4;277(1):486-91. Epub 2001 Oct 25.
5. GOA data from the GO Consortium
6. Hata Y, etal., J Neurosci 1996 Apr 15;16(8):2488-94.
7. Hong CJ and Hsueh YP, Biochem Biophys Res Commun. 2006 Dec 22;351(3):771-6. Epub 2006 Oct 30.
8. Hsueh YP, etal., J Cell Biol. 1998 Jul 13;142(1):139-51.
9. Hsueh YP, etal., J Neurosci. 2001 Jun 1;21(11):3764-70.
10. Hsueh YP, etal., Nature. 2000 Mar 16;404(6775):298-302.
11. Huang TN and Hsueh YP, Biochem Biophys Res Commun. 2009 Apr 24;382(1):219-22. doi: 10.1016/j.bbrc.2009.03.015. Epub 2009 Mar 9.
12. Kuo TY, etal., J Neurosci Res. 2010 Aug 15;88(11):2364-73. doi: 10.1002/jnr.22407.
13. Laverty HG and Wilson JB, Genomics. 1998 Oct 1;53(1):29-41.
14. Lehtonen S, etal., Am J Pathol. 2004 Sep;165(3):923-36.
15. Lehtonen S, etal., Proc Natl Acad Sci U S A. 2005 Jul 12;102(28):9814-9. Epub 2005 Jul 1.
16. Leonoudakis D, etal., J Biol Chem 2004 Apr 30;279(18):19051-63. Epub 2004 Feb 11.
17. Leonoudakis D, etal., J Biol Chem. 2004 May 21;279(21):22331-46. Epub 2004 Mar 15.
18. Liu L, etal., PLoS One. 2014 Aug 4;9(8):e103948. doi: 10.1371/journal.pone.0103948. eCollection 2014.
19. MGD data from the GO Consortium
20. NCBI rat LocusLink and RefSeq merged data July 26, 2002
21. Ohno H, etal., Oncogene. 2003 Nov 20;22(52):8422-31.
22. Ojeh N, etal., J Cell Sci. 2008 Aug 15;121(Pt 16):2705-17. doi: 10.1242/jcs.025643. Epub 2008 Jul 29.
23. Olsen O and Bredt DS, J Biol Chem 2003 Feb 28;278(9):6873-8.
24. OMIM Disease Annotation Pipeline
25. Piluso G, etal., Am J Hum Genet. 2009 Feb;84(2):162-77. doi: 10.1016/j.ajhg.2008.12.018. Epub 2009 Feb 5.
26. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
27. RGD automated data pipeline
28. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
29. RGD automated import pipeline for gene-chemical interactions
30. Saavedra MV, etal., Neuroreport. 2008 Jul 16;19(11):1123-6. doi: 10.1097/WNR.0b013e3283086797.
31. Schuh K, etal., J Biol Chem 2003 Mar 14;278(11):9778-83.
32. Straight SW, etal., Am J Physiol Renal Physiol. 2000 Mar;278(3):F464-75.
33. Tabuchi K, etal., J Neurosci 2002 Jun 1;22(11):4264-73.
34. Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
35. Wang GS, etal., Neuron. 2004 Apr 8;42(1):113-28.
36. Yap CC, etal., J Neurochem 2003 Apr;85(1):123-34.
37. Zhu ZQ, etal., Metabolism. 2014 Jan;63(1):120-6. doi: 10.1016/j.metabol.2013.09.009. Epub 2013 Oct 17.
Additional References at PubMed
PMID:11036064   PMID:11865057   PMID:12151521   PMID:12202822   PMID:12351654   PMID:14622577   PMID:15048107   PMID:15266631   PMID:15584924   PMID:16105026   PMID:16186258   PMID:17287346  
PMID:18054859   PMID:18423203   PMID:19036990   PMID:19620977   PMID:19781660   PMID:21423176   PMID:22871113   PMID:23542924   PMID:23751498   PMID:24498267   PMID:25796372  


Genomics

Comparative Map Data
Cask
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X8,899,500 - 9,243,014 (+)NCBI
Rnor_6.0 EnsemblX9,815,652 - 10,156,155 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X9,815,652 - 10,156,155 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X10,614,514 - 10,954,635 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X20,910,960 - 21,250,869 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X20,964,277 - 21,304,187 (+)NCBI
CeleraX9,439,547 - 9,776,994 (+)NCBICelera
Cytogenetic MapXq12NCBI
CASK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX41,514,934 - 41,923,645 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 EnsemblX41,514,934 - 41,923,517 (-)EnsemblGRCh38hg38GRCh38
GRCh38X41,514,934 - 41,923,554 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X41,374,187 - 41,782,415 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37X41,374,187 - 41,782,807 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X41,264,287 - 41,667,212 (-)NCBINCBI36hg18NCBI36
Build 34X41,135,596 - 41,538,522NCBI
CeleraX45,516,432 - 45,924,508 (-)NCBI
Cytogenetic MapXp11.4NCBI
HuRefX39,105,639 - 39,513,256 (-)NCBIHuRef
CHM1_1X41,406,782 - 41,814,790 (-)NCBICHM1_1
Cask
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X13,383,319 - 13,713,020 (-)NCBIGRCm39mm39
GRCm38X13,517,080 - 13,846,783 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX13,517,080 - 13,851,367 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X13,094,206 - 13,423,667 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X12,678,006 - 13,003,515 (-)NCBImm8
MGSCv36X10,595,356 - 10,921,350 (-)NCBImm8
CeleraX11,186,392 - 11,514,710 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX8.43NCBI
Cask
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955565879,830 - 1,237,692 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955565879,560 - 1,242,727 (+)NCBIChiLan1.0ChiLan1.0
CASK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X41,659,295 - 42,066,570 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX41,659,295 - 42,066,570 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X33,967,329 - 34,374,385 (-)NCBIMhudiblu_PPA_v0panPan3
CASK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 EnsemblX35,940,647 - 36,297,014 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1X35,939,117 - 36,296,438 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cask
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365027,933,312 - 8,281,492 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CASK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX37,167,577 - 37,536,160 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X37,166,973 - 37,535,723 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X41,385,026 - 41,762,853 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CASK
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X38,704,623 - 39,121,309 (-)NCBI
Cask
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476213,723,347 - 14,106,844 (+)NCBI

Position Markers
DXRat48  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X9,404,154 - 9,404,290NCBIRnor6.0
Rnor_6.0X10,092,596 - 10,092,732NCBIRnor6.0
Rnor_5.0X10,891,076 - 10,891,212UniSTSRnor5.0
Rnor_5.0X10,208,459 - 10,208,595UniSTSRnor5.0
RGSC_v3.4X21,186,403 - 21,186,539UniSTSRGSC3.4
RGSC_v3.4X21,186,402 - 21,186,539RGDRGSC3.4
RGSC_v3.1X21,239,720 - 21,239,857RGD
CeleraX9,713,555 - 9,713,691UniSTS
SHRSP x BN MapX0.0UniSTS
SHRSP x BN MapX0.0RGD
Cytogenetic MapXq12UniSTS
DXGot4  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X9,942,299 - 9,942,511NCBIRnor6.0
Rnor_5.0X10,740,760 - 10,740,972UniSTSRnor5.0
RGSC_v3.4X21,037,438 - 21,037,650RGDRGSC3.4
RGSC_v3.4X21,037,439 - 21,037,651UniSTSRGSC3.4
RGSC_v3.1X21,090,756 - 21,090,968RGD
CeleraX9,564,724 - 9,564,926UniSTS
Cytogenetic MapXq12UniSTS
RH144070  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X10,001,822 - 10,001,969NCBIRnor6.0
Rnor_5.0X10,799,719 - 10,799,866UniSTSRnor5.0
RGSC_v3.4X21,095,558 - 21,095,705UniSTSRGSC3.4
CeleraX9,623,139 - 9,623,286UniSTS
RH 3.4 MapX8.8UniSTS
Cytogenetic MapXq12UniSTS
BF404609  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X9,842,690 - 9,842,936NCBIRnor6.0
Rnor_5.0X10,641,552 - 10,641,798UniSTSRnor5.0
RGSC_v3.4X20,937,567 - 20,937,813UniSTSRGSC3.4
CeleraX9,466,100 - 9,466,346UniSTS
Cytogenetic MapXq12UniSTS
AU049649  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X9,942,297 - 9,942,507NCBIRnor6.0
Rnor_5.0X10,740,758 - 10,740,968UniSTSRnor5.0
RGSC_v3.4X21,037,437 - 21,037,647UniSTSRGSC3.4
CeleraX9,564,722 - 9,564,922UniSTS
Cytogenetic MapXq12UniSTS
Cask  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X9,467,825 - 9,468,801NCBIRnor6.0
Rnor_6.0X10,155,364 - 10,156,340NCBIRnor6.0
Rnor_5.0X10,953,844 - 10,954,820UniSTSRnor5.0
Rnor_5.0X10,272,130 - 10,273,106UniSTSRnor5.0
RGSC_v3.4X21,250,078 - 21,251,054UniSTSRGSC3.4
CeleraX9,776,203 - 9,777,179UniSTS
Cytogenetic MapXq12UniSTS
UniSTS:256965  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X10,055,710 - 10,055,789NCBIRnor6.0
Rnor_5.0X10,853,607 - 10,853,686UniSTSRnor5.0
RGSC_v3.4X21,149,446 - 21,149,525UniSTSRGSC3.4
CeleraX9,677,000 - 9,677,079UniSTS
Cytogenetic MapXq12UniSTS
Cask  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X10,064,145 - 10,064,242NCBIRnor6.0
Rnor_5.0X10,862,042 - 10,862,139UniSTSRnor5.0
RGSC_v3.4X21,157,881 - 21,157,978UniSTSRGSC3.4
CeleraX9,685,435 - 9,685,532UniSTS
Cytogenetic MapXq12UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X144092703Rat
70166Bp65Blood pressure QTL 655.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X166245312370298Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X166245321592783Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X166260933443848Rat
631204Gluco15Glucose level QTL 150.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X183816624331837Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X428214049282140Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X595407850954078Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:142
Count of miRNA genes:106
Interacting mature miRNAs:119
Transcripts:ENSRNOT00000004187
Prediction methods:Microtar, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 9 4 4 74 22 34 10
Low 1 43 48 37 19 37 8 11 13 4 1 8
Below cutoff 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_022184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U47110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y08769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: NM_022184   ⟹   NP_071520
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X8,899,833 - 9,238,694 (+)NCBI
Rnor_6.0X9,815,652 - 10,156,155 (+)NCBI
Rnor_5.0X10,614,514 - 10,954,635 (+)NCBI
RGSC_v3.4X20,910,960 - 21,250,869 (+)RGD
CeleraX9,439,547 - 9,776,994 (+)RGD
Sequence:
RefSeq Acc Id: XM_039099551   ⟹   XP_038955479
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X8,899,500 - 9,243,014 (+)NCBI
RefSeq Acc Id: XM_039099552   ⟹   XP_038955480
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X8,899,500 - 9,243,014 (+)NCBI
RefSeq Acc Id: XM_039099553   ⟹   XP_038955481
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X8,899,501 - 9,243,014 (+)NCBI
RefSeq Acc Id: XM_039099554   ⟹   XP_038955482
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X8,899,501 - 9,243,014 (+)NCBI
RefSeq Acc Id: XM_039099555   ⟹   XP_038955483
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X8,899,500 - 9,243,014 (+)NCBI
RefSeq Acc Id: XM_039099556   ⟹   XP_038955484
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X8,899,501 - 9,243,014 (+)NCBI
RefSeq Acc Id: XM_039099557   ⟹   XP_038955485
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X8,899,500 - 9,243,014 (+)NCBI
RefSeq Acc Id: XM_039099558   ⟹   XP_038955486
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X8,899,503 - 9,243,014 (+)NCBI
RefSeq Acc Id: XM_039099559   ⟹   XP_038955487
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X8,900,190 - 9,237,962 (+)NCBI
RefSeq Acc Id: XM_039099560   ⟹   XP_038955488
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X8,899,503 - 9,237,962 (+)NCBI
RefSeq Acc Id: XM_039099561   ⟹   XP_038955489
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X8,900,190 - 9,237,962 (+)NCBI
RefSeq Acc Id: XM_039099562   ⟹   XP_038955490
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X8,900,190 - 9,237,962 (+)NCBI
RefSeq Acc Id: XM_039099563   ⟹   XP_038955491
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X8,899,503 - 9,243,014 (+)NCBI
RefSeq Acc Id: XM_039099564   ⟹   XP_038955492
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X8,899,503 - 9,237,962 (+)NCBI
RefSeq Acc Id: XM_039099565   ⟹   XP_038955493
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X8,900,190 - 9,237,962 (+)NCBI
RefSeq Acc Id: XM_039099566   ⟹   XP_038955494
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X8,900,190 - 9,237,962 (+)NCBI
RefSeq Acc Id: XM_039099567   ⟹   XP_038955495
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X8,900,190 - 9,237,962 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_071520   ⟸   NM_022184
- UniProtKB: Q62915 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_038955479   ⟸   XM_039099551
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038955480   ⟸   XM_039099552
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038955483   ⟸   XM_039099555
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038955485   ⟸   XM_039099557
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038955484   ⟸   XM_039099556
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038955482   ⟸   XM_039099554
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038955481   ⟸   XM_039099553
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038955486   ⟸   XM_039099558
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038955491   ⟸   XM_039099563
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038955492   ⟸   XM_039099564
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038955488   ⟸   XM_039099560
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038955487   ⟸   XM_039099559
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038955489   ⟸   XM_039099561
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038955493   ⟸   XM_039099565
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038955490   ⟸   XM_039099562
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038955494   ⟸   XM_039099566
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038955495   ⟸   XM_039099567
- Peptide Label: isoform X17
Protein Domains
Guanylate kinase-like   L27   PDZ   Protein kinase   SH3

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:62004 AgrOrtholog
Ensembl Genes ENSRNOG00000060946 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000069498 UniProtKB/TrEMBL
  ENSRNOP00000072295 ENTREZGENE
  ENSRNOP00000074587 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000082316 UniProtKB/TrEMBL
  ENSRNOT00000084218 UniProtKB/TrEMBL
  ENSRNOT00000091382 ENTREZGENE
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CASK_SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GK/Ca_channel_bsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Guanylate_kin-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Guanylate_kinase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L27_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L27_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L27_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29647 UniProtKB/Swiss-Prot
NCBI Gene 29647 ENTREZGENE
Pfam Guanylate_kin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L27 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_2 UniProtKB/TrEMBL
PhenoGen Cask PhenoGen
PROSITE GUANYLATE_KINASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GUANYLATE_KINASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L27 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART GuKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L27 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S_TKc UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF101288 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC218599
UniProt A0A0G2JVI6_RAT UniProtKB/TrEMBL
  A0A0G2K8F4_RAT UniProtKB/TrEMBL
  CSKP_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-01 Cask  calcium/calmodulin dependent serine protein kinase  Cask  calcium/calmodulin-dependent serine protein kinase (MAGUK family)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Cask  calcium/calmodulin-dependent serine protein kinase (MAGUK family)    calcium/calmodulin-dependent serine protein kinase  Name updated 1299863 APPROVED
2002-06-10 Cask  calcium/calmodulin-dependent serine protein kinase       Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_domains contains a calmodulin-dependent protein kinase-like domain, PDZ, SH3, and guanylate kinase-like domains 728219