Hrh3 (histamine receptor H3) - Rat Genome Database

Name: Hrh3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Hrh3 (histamine receptor H3) Rattus norvegicus

Analyze

Symbol:

Hrh3

Name:

histamine receptor H3

RGD ID:

620630

Description:

Enables amine binding activity; heterocyclic compound binding activity; and organic cyclic compound binding activity. Involved in several processes, including cAMP metabolic process; learning or memory; and regulation of secretion. Predicted to be located in plasma membrane. Used to study several diseases, including gastric ulcer; hyperglycemia; obesity; sciatic neuropathy; and visual epilepsy. Biomarker of status epilepticus. Orthologous to human HRH3 (histamine receptor H3); INTERACTS WITH 2-methylpyrrolidine; 3',5'-cyclic AMP; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

REVIEWED

Previously known as:

H3R; HH3R; histamine H3 receptor; MGC105370

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HRH3 (histamine receptor H3)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Hrh3 (histamine receptor H3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Hrh3 (histamine receptor H3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HRH3 (histamine receptor H3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	HRH3 (histamine receptor H3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Hrh3 (histamine receptor H3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HRH3 (histamine receptor H3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HRH3 (histamine receptor H3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hrh3 (histamine receptor H3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	FHOD3 (formin homology 2 domain containing 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	HRH3 (histamine receptor H3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Hrh3 (histamine receptor H3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	hrh3 (histamine receptor H3)	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	167,191,551 - 167,196,642 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	167,191,558 - 167,196,642 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	171,568,751 - 171,573,827 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	180,527,834 - 180,532,910 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	177,192,527 - 177,197,612 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	175,474,310 - 175,479,395 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	175,473,078 - 175,479,395 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	181,639,287 - 181,644,372 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	169,154,980 - 169,160,064 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	169,061,015 - 169,066,100 (-)	NCBI
Celera	3	165,383,487 - 165,388,550 (+)	NCBI		Celera
Cytogenetic Map	3	q43	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amnestic disorder (IDA,ISO)

gastric ulcer (IDA)

genetic disease (ISO)

Hyperemia (IDA)

hyperglycemia (IDA)

hypertension (IDA,ISO)

Memory Disorders (ISO)

Myocardial Reperfusion Injury (IDA)

obesity (IDA)

Reperfusion Injury (IDA)

sciatic neuropathy (IDA)

Spinal Cord Injuries (IDA)

status epilepticus (IEP)

visual epilepsy (IDA)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-methylpyrrolidine (EXP,ISO)

3',5'-cyclic AMP (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

alpha-methylhistamine (EXP,ISO)

ammonium chloride (EXP)

arsenite(3-) (ISO)

benzene (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (EXP)

bisphenol F (EXP)

cadmium dichloride (EXP)

calcium atom (ISO)

calcium(0) (ISO)

clobenpropit (EXP,ISO)

clozapine (EXP)

colforsin daropate hydrochloride (EXP)

copper atom (EXP)

copper(0) (EXP)

dextran sulfate (ISO)

diethylamine (EXP,ISO)

dimethylamine (EXP,ISO)

diuron (EXP)

dorsomorphin (ISO)

furans (ISO)

GTP (EXP,ISO)

histamine (EXP,ISO)

imetit (EXP,ISO)

Immepip (EXP,ISO)

ketamine (EXP)

mercury dibromide (ISO)

N(tele)-methylhistamine (EXP)

N-alpha-Methylhistamine (ISO)

N-methylethanolamine (EXP,ISO)

N-nitrosodiethylamine (EXP)

oxaliplatin (EXP)

p-chloromercuribenzoic acid (ISO)

paracetamol (ISO)

PCB138 (ISO)

pyrrolidine (EXP,ISO)

SB 431542 (ISO)

scopolamine (EXP)

silver atom (ISO)

silver(0) (ISO)

Tesaglitazar (EXP)

Thioperamide (EXP,ISO)

thiophenes (ISO)

titanium dioxide (ISO)

topotecan (EXP)

tributylstannane (EXP)

trichostatin A (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adenylate cyclase-inhibiting G protein-coupled acetylcholine receptor signaling pathway (IBA)

cAMP metabolic process (IDA)

chemical synaptic transmission (IBA)

cognition (IBA,IMP)

drinking behavior (IMP)

eating behavior (IMP)

G protein-coupled receptor signaling pathway (IEA)

G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger (IBA)

G protein-coupled serotonin receptor signaling pathway (IEA)

learning (IMP)

memory (IMP)

negative regulation of adenylate cyclase activity (IDA)

negative regulation of blood pressure (IMP)

negative regulation of gamma-aminobutyric acid secretion (IMP)

negative regulation of glutamate secretion (IBA,IMP)

negative regulation of serotonin secretion (IBA,IMP)

positive regulation of arachidonic acid secretion (IDA)

positive regulation of cytosolic calcium ion concentration (IMP)

positive regulation of epithelial cell proliferation (IMP)

regulation of norepinephrine secretion (IBA,IMP)

response to forskolin (IDA)

response to organic cyclic compound (IMP)

Cellular Component

dendrite (IBA)

membrane (IEA)

plasma membrane (IEA)

synapse (IBA)

Molecular Function

amine binding (IPI)

G protein-coupled acetylcholine receptor activity (IBA)

G protein-coupled serotonin receptor activity (IBA)

heterocyclic compound binding (IPI)

histamine receptor activity (IEA)

organic cyclic compound binding (IMP)

References

References - curated

#	Reference Title	Reference Citation
1.	Expression of mRNA encoding the H1, H2, and H3 histamine receptors in the rat cochlea.	Azuma H, etal., Neuroreport 2003 Mar 3;14(3):423-5.
2.	The H3 receptor protean agonist proxyfan enhances the expression of fear memory in the rat.	Baldi E, etal., Neuropharmacology. 2005 Feb;48(2):246-51.
3.	The histamine H3 receptor antagonist clobenpropit enhances GABA release to protect against NMDA-induced excitotoxicity through the cAMP/protein kinase A pathway in cultured cortical neurons.	Dai H, etal., Eur J Pharmacol. 2007 Jun 1;563(1-3):117-23. Epub 2007 Feb 8.
4.	Role of capsaicin-sensitive nerves and histamine H1, H2, and H3 receptors in the gastroprotective effect of histamine against stress ulcers in rats.	Dembinski A, etal., Eur J Pharmacol. 2005 Jan 31;508(1-3):211-21. Epub 2004 Dec 30.
5.	Presynaptic localization of histamine H3-receptors in rat brain.	Fujimoto K, etal., Biochem Biophys Res Commun. 1991 Jun 28;177(3):907-12.
6.	Pre-synaptic histamine H3 receptors regulate glutamate, but not GABA release in rat thalamus.	Garduno-Torres B, etal., Neuropharmacology. 2007 Feb;52(2):527-35. Epub 2006 Oct 5.
7.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
8.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
9.	Inhibitory H3 receptors on sympathetic nerves of the pithed rat: activation by endogenous histamine and operation in spontaneously hypertensive rats.	Godlewski G, etal., Naunyn Schmiedebergs Arch Pharmacol. 1997 Feb;355(2):261-6.
10.	Epithelial cell proliferation is promoted by the histamine H(3) receptor agonist (R)-alpha-methylhistamine throughout the rat gastrointestinal tract.	Grandi D, etal., Eur J Pharmacol. 2006 May 24;538(1-3):141-7. Epub 2006 Mar 27.
11.	Intracerebroventricular administration of histamine H3 receptor antagonists decreases seizures in rat models of epilepsia.	Harada C, etal., Methods Find Exp Clin Pharmacol. 2004 May;26(4):263-70.
12.	Suppression of inflammatory cell recruitment by histamine receptor stimulation in ischemic rat brains.	Hiraga N, etal., Eur J Pharmacol. 2007 Feb 28;557(2-3):236-44. Epub 2006 Nov 14.
13.	Histaminergic involvement in neuropathic pain produced by partial ligation of the sciatic nerve in rats.	Huang L, etal., Reg Anesth Pain Med. 2007 Mar-Apr;32(2):124-9.
14.	Detailed pharmacological characterization of GT-2331 for the rat histamine H3 receptor.	Ito S, etal., Eur J Pharmacol. 2006 Jan 4;529(1-3):40-6. Epub 2005 Nov 28.
15.	Expression of the H3 receptor in the developing CNS and brown fat suggests novel roles for histamine.	Karlstedt K, etal., Mol Cell Neurosci. 2003 Nov;24(3):614-22.
16.	Distinct pharmacology of rat and human histamine H(3) receptors: role of two amino acids in the third transmembrane domain.	Ligneau X, etal., Br J Pharmacol. 2000 Dec;131(7):1247-50. doi: 10.1038/sj.bjp.0703712.
17.	Transient changes in the limbic histaminergic system after systemic kainic acid-induced seizures.	Lintunen M, etal., Neurobiol Dis. 2005 Oct;20(1):155-69.
18.	Cloning of rat histamine H(3) receptor reveals distinct species pharmacological profiles.	Lovenberg TW, etal., J Pharmacol Exp Ther 2000 Jun;293(3):771-8.
19.	Increase of neuronal histamine in obese rats is associated with decreases in body weight and plasma triglycerides.	Malmlof K, etal., Obesity (Silver Spring). 2006 Dec;14(12):2154-62.
20.	Structurally novel histamine H3 receptor antagonists GSK207040 and GSK334429 improve scopolamine-induced memory impairment and capsaicin-induced secondary allodynia in rats.	Medhurst AD, etal., Biochem Pharmacol. 2007 Apr 15;73(8):1182-94. Epub 2007 Jan 7.
21.	GSK189254, a novel H3 receptor antagonist that binds to histamine H3 receptors in Alzheimer's disease brain and improves cognitive performance in preclinical models.	Medhurst AD, etal., J Pharmacol Exp Ther. 2007 Jun;321(3):1032-45. Epub 2007 Feb 27.
22.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
23.	High constitutive activity of native H3 receptors regulates histamine neurons in brain.	Morisset S, etal., Nature. 2000 Dec 14;408(6814):860-4. doi: 10.1038/35048583.
24.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
25.	Histamine H3 receptors modulate reactive hyperemia in rat gut.	Pawlik WW, etal., J Physiol Pharmacol. 2004 Sep;55(3):651-61.
26.	GOA pipeline	RGD automated data pipeline
27.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
28.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
29.	Histamine receptors influence blood-spinal cord barrier permeability, edema formation, and spinal cord blood flow following trauma to the rat spinal cord.	Sharma HS, etal., Acta Neurochir Suppl. 2006;96:316-21.
30.	Histamine H3 receptors inhibit serotonin release in substantia nigra pars reticulata.	Threlfell S, etal., J Neurosci. 2004 Oct 6;24(40):8704-10.
31.	Role of histamine H3 receptors during ischemia/reperfusion in isolated rat hearts.	Yamamoto S, etal., J Cardiovasc Pharmacol. 2004 Mar;43(3):353-7.
32.	Effect of L-carnosine on the hyperglycemia caused by intracranial injection of 2-deoxy-D-glucose in rats.	Yamano T, etal., Neurosci Lett. 2001 Nov 2;313(1-2):78-82.

Additional References at PubMed

PMID:10347254	PMID:11125017	PMID:11162480	PMID:12477932	PMID:15465923	PMID:15899242	PMID:15928831	PMID:16181737	PMID:16415177	PMID:16436594	PMID:16715497	PMID:16797837
PMID:17531160	PMID:17561422	PMID:17806162	PMID:17940197	PMID:17998102	PMID:18302930	PMID:18345490	PMID:18564330	PMID:19446035	PMID:19490084	PMID:19735700	PMID:21173143
PMID:21272571	PMID:21839070	PMID:22050612	PMID:22277566	PMID:22356432	PMID:22870296	PMID:23488566	PMID:23896530	PMID:24432407	PMID:25745947	PMID:26169221	PMID:28964277
PMID:29217157	PMID:32211996	PMID:33068216

Genomics

Comparative Map Data

Hrh3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	167,191,551 - 167,196,642 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	167,191,558 - 167,196,642 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	171,568,751 - 171,573,827 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	180,527,834 - 180,532,910 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	177,192,527 - 177,197,612 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	175,474,310 - 175,479,395 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	175,473,078 - 175,479,395 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	181,639,287 - 181,644,372 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	169,154,980 - 169,160,064 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	169,061,015 - 169,066,100 (-)	NCBI
Celera	3	165,383,487 - 165,388,550 (+)	NCBI		Celera
Cytogenetic Map	3	q43	NCBI

HRH3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	62,214,960 - 62,220,278 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	62,214,960 - 62,220,278 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	60,790,016 - 60,795,334 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	60,223,421 - 60,228,718 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	60,223,421 - 60,228,707	NCBI
Celera	20	57,525,154 - 57,530,460 (-)	NCBI		Celera
Cytogenetic Map	20	q13.33	NCBI
HuRef	20	57,566,507 - 57,570,202 (-)	NCBI		HuRef
CHM1_1	20	60,690,583 - 60,695,889 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	64,006,090 - 64,011,408 (-)	NCBI		T2T-CHM13v2.0

Hrh3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	179,741,258 - 179,746,264 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	179,741,258 - 179,746,281 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	180,099,465 - 180,104,484 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	180,099,465 - 180,104,488 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	179,834,178 - 179,838,927 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	180,028,881 - 180,033,632 (-)	NCBI		MGSCv36	mm8
Celera	2	184,181,575 - 184,186,324 (-)	NCBI		Celera
Cytogenetic Map	2	H4	NCBI
cM Map	2	102.62	NCBI

Hrh3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955528	1,819,247 - 1,826,707 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955528	1,819,247 - 1,826,707 (+)	NCBI	ChiLan1.0	ChiLan1.0

HRH3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	20	67,990,084 - 67,995,449 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	58,581,228 - 58,586,585 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	59,900,919 - 59,905,858 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	59,901,327 - 59,909,901 (-)	Ensembl	panpan1.1		panPan2

HRH3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	46,239,883 - 46,243,123 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	45,476,507 - 45,480,947 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	47,095,982 - 47,100,422 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	47,096,070 - 47,100,764 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	46,197,405 - 46,201,844 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	46,320,612 - 46,325,047 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	47,074,908 - 47,079,348 (-)	NCBI		UU_Cfam_GSD_1.0

Hrh3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	194,408,461 - 194,412,309 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	9,862,523 - 9,873,159 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	9,862,104 - 9,865,614 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HRH3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	61,622,938 - 61,627,278 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	61,622,865 - 61,627,278 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

HRH3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	2,019,878 - 2,025,218 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	2,020,286 - 2,025,202 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	49,967,430 - 49,972,751 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hrh3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	28,080,965 - 28,085,428 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	28,080,957 - 28,086,312 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Hrh3
5 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	122438700	167438700	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	124122556	169034231	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	127162703	168026850	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	130656562	169034231	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	130656562	169034231	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	131635904	169034231	Rat
2298477	Eau4	Experimental allergic uveoretinitis QTL 4		0.0011	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	3	137398739	169034231	Rat
8552952	Pigfal13	Plasma insulin-like growth factor 1 level QTL 13			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	138799500	169034231	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141074471	169034231	Rat
2317883	Alcrsp26	Alcohol response QTL 26	1.8	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	3	145526770	169034231	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	145956084	169034231	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	149040888	168026850	Rat
1300161	Rf10	Renal function QTL 10	3.57		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	3	161192952	169034231	Rat

Markers in Region

D3Wox40

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	167,192,318 - 167,192,463 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	175,475,072 - 175,475,216	NCBI	Rnor6.0
Rnor_5.0	3	181,643,466 - 181,643,610	UniSTS	Rnor5.0
RGSC_v3.4	3	169,155,741 - 169,155,885	UniSTS	RGSC3.4
Celera	3	165,387,654 - 165,387,788	UniSTS
Cytogenetic Map	3	q43	UniSTS

AA943666

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	167,191,632 - 167,191,754 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	175,474,386 - 175,474,507	NCBI	Rnor6.0
Rnor_5.0	3	181,644,175 - 181,644,296	UniSTS	Rnor5.0
RGSC_v3.4	3	169,155,055 - 169,155,176	UniSTS	RGSC3.4
Celera	3	165,388,353 - 165,388,474	UniSTS
RH 3.4 Map	3	1524.0	UniSTS
Cytogenetic Map	3	q43	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									11
Low			15		17				61	6	2	5
Below cutoff	3	20	28	27	2	27	5	7	2	25	32	6	5

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001270564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001270565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001270566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001270567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001270568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001270569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001270570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_053506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_073042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB015646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC130642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF237919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY009370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY009371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB735595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ112342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ112343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000077308 ⟹ ENSRNOP00000071828

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	167,191,558 - 167,196,642 (-)	Ensembl
Rnor_6.0 Ensembl	3	175,474,311 - 175,479,395 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000086761 ⟹ ENSRNOP00000069003

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	167,191,558 - 167,196,642 (-)	Ensembl
Rnor_6.0 Ensembl	3	175,473,078 - 175,479,034 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000116829 ⟹ ENSRNOP00000090011

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	167,191,558 - 167,196,642 (-)	Ensembl

RefSeq Acc Id:

NM_001270564 ⟹ NP_001257493

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	167,191,557 - 167,196,642 (-)	NCBI
Rnor_6.0	3	175,474,310 - 175,479,395 (-)	NCBI
Rnor_5.0	3	181,639,287 - 181,644,372 (+)	NCBI
Celera	3	165,383,487 - 165,388,550 (+)	NCBI

Sequence:

show sequence

CGGGCAGATCGCGGGGCGCACTCGGTTGCGCGCTGAGCTAGGGGTGCACCGACGCACCGCGGGC
GGCTGGAGCTCGGCTTTGCTCTCGCTGCAGCAGCCGCGCCGCCCGCCCCACTCCGCTCAGATTC
CGACACCAGCCCCCTCTGGATCGCCCTCCTGGACTCTAGCCCGGGCTCTTGCTCCGACCCCGCG
GACCATGCTCCGGGCGCCCCCCGGAAAACCGGGCTGGGCGAAGAGCCGGCAAAGATTAGGCTCA
CGAGCGGGGGCCCCACCCGGCCACCCAGCTCTCCGCCCGTGCCCTGCCCGGTGTCCCCGAGCCG
TGTGAGCCTGCTGGGCCATGGAGCGCGCGCCGCCCGACGGGCTGATGAACGCGTCGGGCACTCT
GGCCGGAGAGGCGGCGGCTGCAGGCGGGGCGCGCGGCTTCTCGGCTGCCTGGACCGCTGTCCTG
GCTGCGCTCATGGCGCTGCTCATCGTGGCCACAGTACTGGGCAACGCGCTGGTCATGCTCGCCT
TCGTGGCGGATTCGAGCCTCCGCACCCAGAACAACTTCTTTCTGCTCAACCTCGCCATCTCCGA
CTTCCTCGTGGGTGCCTTCTGCATCCCATTGTACGTACCCTATGTGCTGACCGGCCGTTGGACC
TTCGGCCGGGGCCTCTGCAAGCTGTGGCTGGTGGTAGACTACCTACTGTGTGCCTCCTCGGTCT
TCAACATCGTACTCATCAGCTATGACCGATTCCTGTCAGTCACTCGAGCTGTCTCCTACAGGGC
CCAGCAGGGGGACACGAGACGGGCCGTTCGGAAGATGGCACTGGTGTGGGTGCTGGCCTTCCTG
CTGTATGGGCCTGCCATCCTGAGTTGGGAGTACCTGTCTGGTGGCAGTTCCATCCCCGAGGGCC
ACTGCTATGCTGAGTTCTTCTACAACTGGTACTTTCTCATCACGGCCTCCACCCTCGAGTTCTT
CACGCCCTTCCTCAGCGTTACCTTCTTCAACCTCAGCATCTACCTGAACATCCAGAGGCGCACC
CGCCTTCGGCTTGATGGGGGCCGTGAGGCTGGCCCAGAACCCCCACCAGATGCCCAGCCCTCGC
CACCTCCAGCTCCCCCCAGCTGCTGGGGCTGCTGGCCAAAAGGGCATGGCGAGGCCATGCCGTT
GCACAGCTCTGGCAGCTCCTCAAGGGGCACTGAGAGGCCACGCTCACTCAAAAGGGGCTCCAAG
CCATCAGCATCTTCAGCATCCCTGGAGAAGCGCATGAAGATGGTGTCCCAGAGCATCACCCAGC
GCTTCCGGCTGTCGCGGGACAAGAAGGTGGCCAAGTCGCTGGCCATCATCGTGAGCATCTTTGG
GCTCTGCTGGGCGCCGTACACGCTCCTAATGATCATCCGAGCTGCTTGCCATGGCCGCTGCATC
CCCGATTACTGGTACGAGACGTCCTTCTGGCTTCTGTGGGCCAACTCGGCCGTCAACCCCGTCC
TCTACCCACTGTGCCACTACAGCTTCCGCAGAGCCTTCACCAAGCTCCTCTGCCCCCAGAAGCT
CAAGGTCCAGCCCCACGGCTCCCTGGAGCAGTGCTGGAAGTGAGCAGCTGCCCCACCCTTCTGA
GGCCAGGCCCTTGTACTTGTTTGAGTGGGCAGCCGGAGCGTGGGCGGGGCCCTGGTCCATGCTC
CGCTCCAAATGCCATGGCGGCCTCTTAGATCATCAACCCCGCAGTGGGGTAGCATGGCAGGTGG
GCCAAGAGCCCTAGTTGGTGGAGCTAGAGTGTGCTGGTTAGCTCTGCCGCCACATTCTCCTTCA
CCACACAGAAGAGACAATCCAGGAGTCCCAGGCATGCCTTCCACCTACACACACACACACACAC
ACACACACACACACACACACACACACCACAGTGCAGTGCCAGTGATGTCCCCTTTTGCATATTT
AGTGGTTGGTGTCCTCCCTAATGCAAACCTCGGTGTGTGCTCCCGGCTCCGGCCCTGGCAATGC
GTGCGTGCGCCCTGCATGTGCTCACACCCGCCACACACCCGCCCGCCACACACTTGCAACACCT
CCTCTCTCCCAGAAGAGCTGGGGACGATGCCCTTTGCTGCCACTGTCTCTTGCTTAATCCCAGA
GCCTGGCTCCTTATCCCCCACTCTCCCTTCAACTCTGCCCCACAAAGTGTCGAGCGCCTCGGGA
AACTTGAAGCTTCTCTGCTCCTTCCACTCTGGATGTTTTCAGGAAGATGGAGGAGAAGAAAACA
CGTCTGTGAACTTGATGTTCCTTGGATGTTTAATCAAGAGAGACAAAATTGCCGAGGAGCTCGG
GGCTGGATTGGCAGGTGTGGGCTCCCACGCCCTCCTCCCTCAGTGCTGCAGCTTCCGGCTGAGC
CGCGCCAGCTGCTTCTGCCTGCCCCGCCCCCAGGCTTGGGACGATGGCCCTGCCCTGCTTGCCC
CGTCTGTACAATCAGAATTTGGGGGTGGGTGGTTATGGGGTAGAGCGGCTCTTCACTGTGCCCT
AAAGGTCCTGAGGCTCACAGGACAGTCAGCAGGAGAGCAGGCAGGCCCGCGACACCTGGGAGGA
ATGCTTTGCCTCGTCCTGTGTACTCACCTCAGGCTTCTGCATGCTCTGCTGCCCTTGTGCCCTG
GTGTGCTGCCTCTGCCAATGTGAAAACACAATAAAGTGTATTTTTTTACGGAAAAAAAAAAAAA
AAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001270565 ⟹ NP_001257494

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	167,191,557 - 167,196,642 (-)	NCBI
Rnor_6.0	3	175,474,310 - 175,479,395 (-)	NCBI
Rnor_5.0	3	181,639,287 - 181,644,372 (+)	NCBI
Celera	3	165,383,487 - 165,388,550 (+)	NCBI

Sequence:

show sequence

CGGGCAGATCGCGGGGCGCACTCGGTTGCGCGCTGAGCTAGGGGTGCACCGACGCACCGCGGGC
GGCTGGAGCTCGGCTTTGCTCTCGCTGCAGCAGCCGCGCCGCCCGCCCCACTCCGCTCAGATTC
CGACACCAGCCCCCTCTGGATCGCCCTCCTGGACTCTAGCCCGGGCTCTTGCTCCGACCCCGCG
GACCATGCTCCGGGCGCCCCCCGGAAAACCGGGCTGGGCGAAGAGCCGGCAAAGATTAGGCTCA
CGAGCGGGGGCCCCACCCGGCCACCCAGCTCTCCGCCCGTGCCCTGCCCGGTGTCCCCGAGCCG
TGTGAGCCTGCTGGGCCATGGAGCGCGCGCCGCCCGACGGGCTGATGAACGCGTCGGGCACTCT
GGCCGGAGAGGCGGCGGCTGCAGGCGGGGCGCGCGGCTTCTCGGCTGCCTGGACCGCTGTCCTG
GCTGCGCTCATGGCGCTGCTCATCGTGGCCACAGTACTGGGCAACGCGCTGGTCATGCTCGCCT
TCGTGGCGGATTCGAGCCTCCGCACCCAGAACAACTTCTTTCTGCTCAACCTCGCCATCTCCGA
CTTCCTCGTGGGTGCCTTCTGCATCCCATTGTACGTACCCTATGTGCTGACCGGCCGTTGGACC
TTCGGCCGGGGCCTCTGCAAGCTGTGGCTGGTGGTAGACTACCTACTGTGTGCCTCCTCGGTCT
TCAACATCGTACTCATCAGCTATGACCGATTCCTGTCAGTCACTCGAGCTGTCTCCTACAGGGC
CCAGCAGGGGGACACGAGACGGGCCGTTCGGAAGATGGCACTGGTGTGGGTGCTGGCCTTCCTG
CTGTATGGGCCTGCCATCCTGAGTTGGGAGTACCTGTCTGGTGGCAGTTCCATCCCCGAGGGCC
ACTGCTATGCTGAGTTCTTCTACAACTGGTACTTTCTCATCACGGCCTCCACCCTCGAGTTCTT
CACGCCCTTCCTCAGCGTTACCTTCTTCAACCTCAGCATCTACCTGAACATCCAGAGGCGCACC
CGCCTTCGGCTTGATGGGGGCCGTGAGGCTGGCCCAGAACCCCCACCAGATGCCCAGCCCTCGC
CACCTCCAGCTCCCCCCAGCTGCTGGGGCTGCTGGCCAAAAGGGCATGGCGAGGCCATGCCGTT
GCACAGGGGCTCCAAGCCATCAGCATCTTCAGCATCCCTGGAGAAGCGCATGAAGATGGTGTCC
CAGAGCATCACCCAGCGCTTCCGGCTGTCGCGGGACAAGAAGGTGGCCAAGTCGCTGGCCATCA
TCGTGAGCATCTTTGGGCTCTGCTGGGCGCCGTACACGCTCCTAATGATCATCCGAGCTGCTTG
CCATGGCCGCTGCATCCCCGATTACTGGTACGAGACGTCCTTCTGGCTTCTGTGGGCCAACTCG
GCCGTCAACCCCGTCCTCTACCCACTGTGCCACTACAGCTTCCGCAGAGCCTTCACCAAGCTCC
TCTGCCCCCAGAAGCTCAAGGTCCAGCCCCACGGCTCCCTGGAGCAGTGCTGGAAGTGAGCAGC
TGCCCCACCCTTCTGAGGCCAGGCCCTTGTACTTGTTTGAGTGGGCAGCCGGAGCGTGGGCGGG
GCCCTGGTCCATGCTCCGCTCCAAATGCCATGGCGGCCTCTTAGATCATCAACCCCGCAGTGGG
GTAGCATGGCAGGTGGGCCAAGAGCCCTAGTTGGTGGAGCTAGAGTGTGCTGGTTAGCTCTGCC
GCCACATTCTCCTTCACCACACAGAAGAGACAATCCAGGAGTCCCAGGCATGCCTTCCACCTAC
ACACACACACACACACACACACACACACACACACACACACACCACAGTGCAGTGCCAGTGATGT
CCCCTTTTGCATATTTAGTGGTTGGTGTCCTCCCTAATGCAAACCTCGGTGTGTGCTCCCGGCT
CCGGCCCTGGCAATGCGTGCGTGCGCCCTGCATGTGCTCACACCCGCCACACACCCGCCCGCCA
CACACTTGCAACACCTCCTCTCTCCCAGAAGAGCTGGGGACGATGCCCTTTGCTGCCACTGTCT
CTTGCTTAATCCCAGAGCCTGGCTCCTTATCCCCCACTCTCCCTTCAACTCTGCCCCACAAAGT
GTCGAGCGCCTCGGGAAACTTGAAGCTTCTCTGCTCCTTCCACTCTGGATGTTTTCAGGAAGAT
GGAGGAGAAGAAAACACGTCTGTGAACTTGATGTTCCTTGGATGTTTAATCAAGAGAGACAAAA
TTGCCGAGGAGCTCGGGGCTGGATTGGCAGGTGTGGGCTCCCACGCCCTCCTCCCTCAGTGCTG
CAGCTTCCGGCTGAGCCGCGCCAGCTGCTTCTGCCTGCCCCGCCCCCAGGCTTGGGACGATGGC
CCTGCCCTGCTTGCCCCGTCTGTACAATCAGAATTTGGGGGTGGGTGGTTATGGGGTAGAGCGG
CTCTTCACTGTGCCCTAAAGGTCCTGAGGCTCACAGGACAGTCAGCAGGAGAGCAGGCAGGCCC
GCGACACCTGGGAGGAATGCTTTGCCTCGTCCTGTGTACTCACCTCAGGCTTCTGCATGCTCTG
CTGCCCTTGTGCCCTGGTGTGCTGCCTCTGCCAATGTGAAAACACAATAAAGTGTATTTTTTTA
CGGAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001270566 ⟹ NP_001257495

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	167,191,557 - 167,196,642 (-)	NCBI
Rnor_6.0	3	175,474,310 - 175,479,395 (-)	NCBI
Rnor_5.0	3	181,639,287 - 181,644,372 (+)	NCBI
Celera	3	165,383,487 - 165,388,550 (+)	NCBI

Sequence:

show sequence

CGGGCAGATCGCGGGGCGCACTCGGTTGCGCGCTGAGCTAGGGGTGCACCGACGCACCGCGGGC
GGCTGGAGCTCGGCTTTGCTCTCGCTGCAGCAGCCGCGCCGCCCGCCCCACTCCGCTCAGATTC
CGACACCAGCCCCCTCTGGATCGCCCTCCTGGACTCTAGCCCGGGCTCTTGCTCCGACCCCGCG
GACCATGCTCCGGGCGCCCCCCGGAAAACCGGGCTGGGCGAAGAGCCGGCAAAGATTAGGCTCA
CGAGCGGGGGCCCCACCCGGCCACCCAGCTCTCCGCCCGTGCCCTGCCCGGTGTCCCCGAGCCG
TGTGAGCCTGCTGGGCCATGGAGCGCGCGCCGCCCGACGGGCTGATGAACGCGTCGGGCACTCT
GGCCGGAGAGGCGGCGGCTGCAGGCGGGGCGCGCGGCTTCTCGGCTGCCTGGACCGCTGTCCTG
GCTGCGCTCATGGCGCTGCTCATCGTGGCCACAGTACTGGGCAACGCGCTGGTCATGCTCGCCT
TCGTGGCGGATTCGAGCCTCCGCACCCAGAACAACTTCTTTCTGCTCAACCTCGCCATCTCCGA
CTTCCTCGTGGGTGCCTTCTGCATCCCATTGTACGTACCCTATGTGCTGACCGGCCGTTGGACC
TTCGGCCGGGGCCTCTGCAAGCTGTGGCTGGTGGTAGACTACCTACTGTGTGCCTCCTCGGTCT
TCAACATCGTACTCATCAGCTATGACCGATTCCTGTCAGTCACTCGAGCTGTCTCCTACAGGGC
CCAGCAGGGGGACACGAGACGGGCCGTTCGGAAGATGGCACTGGTGTGGGTGCTGGCCTTCCTG
CTGTATGGGCCTGCCATCCTGAGTTGGGAGTACCTGTCTGGTGGCAGTTCCATCCCCGAGGGCC
ACTGCTATGCTGAGTTCTTCTACAACTGGTACTTTCTCATCACGGCCTCCACCCTCGAGTTCTT
CACGCCCTTCCTCAGCGTTACCTTCTTCAACCTCAGCATCTACCTGAACATCCAGAGGCGCACC
CGCCTTCGGCTTGATGGGGGCCGTGAGGCTGGCCCAGAACCCCCACCAGATGCCCAGCCCTCGC
CACCTCCAGCTCCCCCCAGCTGCTGGGGCTGCTGGCCAAAAGGGCATGGCGAGGCCATGCCGTT
GCACAGGTATGGGGTGGGTGAGGCAGGCCCTGGTGTTGAGGCTGGGGAGGCTGCCCTCGGGGGT
GGCAGTGGTGGAGGTGCTGCTGCCTCGCCCACCTCCAGCTCTGGCAGCTCCTCAAGGGGCACTG
AGAGGCCACGCTCACTCAAAAGGGGCTCCAAGCCATCAGCATCTTCAGCATCCCTGGAGAAGCG
CATGAAGATGGTGTCCCAGAGCATCACCCAGCGCTTCCGGCTGTCGCGGGACAAGAAGGTGGCC
AAGTCGCTGGCCATCATCGTGAGCATCTTTGGGCTCTGCTGGGCGCCGTACACGCTCCTAATGA
TCATCCGAGCTGCTTGCCATGGCCGCTGCATCCCCGATTACTGTGTCGAGCGCCTCGGGAAACT
TGAAGCTTCTCTGCTCCTTCCACTCTGGATGTTTTCAGGAAGATGGAGGAGAAGAAAACACGTC
TGTGAACTTGATGTTCCTTGGATGTTTAATCAAGAGAGACAAAATTGCCGAGGAGCTCGGGGCT
GGATTGGCAGGTGTGGGCTCCCACGCCCTCCTCCCTCAGTGCTGCAGCTTCCGGCTGAGCCGCG
CCAGCTGCTTCTGCCTGCCCCGCCCCCAGGCTTGGGACGATGGCCCTGCCCTGCTTGCCCCGTC
TGTACAATCAGAATTTGGGGGTGGGTGGTTATGGGGTAGAGCGGCTCTTCACTGTGCCCTAAAG
GTCCTGAGGCTCACAGGACAGTCAGCAGGAGAGCAGGCAGGCCCGCGACACCTGGGAGGAATGC
TTTGCCTCGTCCTGTGTACTCACCTCAGGCTTCTGCATGCTCTGCTGCCCTTGTGCCCTGGTGT
GCTGCCTCTGCCAATGTGAAAACACAATAAAGTGTATTTTTTTACGGAAAAAAAAAAAAAAAAA
AAAA

hide sequence

RefSeq Acc Id:

NM_001270567 ⟹ NP_001257496

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	167,191,557 - 167,196,642 (-)	NCBI
Rnor_6.0	3	175,474,310 - 175,479,395 (-)	NCBI
Rnor_5.0	3	181,639,287 - 181,644,372 (+)	NCBI
Celera	3	165,383,487 - 165,388,550 (+)	NCBI

Sequence:

show sequence

CGGGCAGATCGCGGGGCGCACTCGGTTGCGCGCTGAGCTAGGGGTGCACCGACGCACCGCGGGC
GGCTGGAGCTCGGCTTTGCTCTCGCTGCAGCAGCCGCGCCGCCCGCCCCACTCCGCTCAGATTC
CGACACCAGCCCCCTCTGGATCGCCCTCCTGGACTCTAGCCCGGGCTCTTGCTCCGACCCCGCG
GACCATGCTCCGGGCGCCCCCCGGAAAACCGGGCTGGGCGAAGAGCCGGCAAAGATTAGGCTCA
CGAGCGGGGGCCCCACCCGGCCACCCAGCTCTCCGCCCGTGCCCTGCCCGGTGTCCCCGAGCCG
TGTGAGCCTGCTGGGCCATGGAGCGCGCGCCGCCCGACGGGCTGATGAACGCGTCGGGCACTCT
GGCCGGAGAGGCGGCGGCTGCAGGCGGGGCGCGCGGCTTCTCGGCTGCCTGGACCGCTGTCCTG
GCTGCGCTCATGGCGCTGCTCATCGTGGCCACAGTACTGGGCAACGCGCTGGTCATGCTCGCCT
TCGTGGCGGATTCGAGCCTCCGCACCCAGAACAACTTCTTTCTGCTCAACCTCGCCATCTCCGA
CTTCCTCGTGGGTGCCTTCTGCATCCCATTGTACGTACCCTATGTGCTGACCGGCCGTTGGACC
TTCGGCCGGGGCCTCTGCAAGCTGTGGCTGGTGGTAGACTACCTACTGTGTGCCTCCTCGGTCT
TCAACATCGTACTCATCAGCTATGACCGATTCCTGTCAGTCACTCGAGCTGTCTCCTACAGGGC
CCAGCAGGGGGACACGAGACGGGCCGTTCGGAAGATGGCACTGGTGTGGGTGCTGGCCTTCCTG
CTGTATGGGCCTGCCATCCTGAGTTGGGAGTACCTGTCTGGTGGCAGTTCCATCCCCGAGGGCC
ACTGCTATGCTGAGTTCTTCTACAACTGGTACTTTCTCATCACGGCCTCCACCCTCGAGTTCTT
CACGCCCTTCCTCAGCGTTACCTTCTTCAACCTCAGCATCTACCTGAACATCCAGAGGCGCACC
CGCCTTCGGCTTGATGGGGGCCGTGAGGCTGGCCCAGAACCCCCACCAGATGCCCAGCCCTCGC
CACCTCCAGCTCCCCCCAGCTGCTGGGGCTGCTGGCCAAAAGGGCATGGCGAGGCCATGCCGTT
GCACAGCTCTGGCAGCTCCTCAAGGGGCACTGAGAGGCCACGCTCACTCAAAAGGGGCTCCAAG
CCATCAGCATCTTCAGCATCCCTGGAGAAGCGCATGAAGATGGTGTCCCAGAGCATCACCCAGC
GCTTCCGGCTGTCGCGGGACAAGAAGGTGGCCAAGTCGCTGGCCATCATCGTGAGCATCTTTGG
GCTCTGCTGGGCGCCGTACACGCTCCTAATGATCATCCGAGCTGCTTGCCATGGCCGCTGCATC
CCCGATTACTGTGTCGAGCGCCTCGGGAAACTTGAAGCTTCTCTGCTCCTTCCACTCTGGATGT
TTTCAGGAAGATGGAGGAGAAGAAAACACGTCTGTGAACTTGATGTTCCTTGGATGTTTAATCA
AGAGAGACAAAATTGCCGAGGAGCTCGGGGCTGGATTGGCAGGTGTGGGCTCCCACGCCCTCCT
CCCTCAGTGCTGCAGCTTCCGGCTGAGCCGCGCCAGCTGCTTCTGCCTGCCCCGCCCCCAGGCT
TGGGACGATGGCCCTGCCCTGCTTGCCCCGTCTGTACAATCAGAATTTGGGGGTGGGTGGTTAT
GGGGTAGAGCGGCTCTTCACTGTGCCCTAAAGGTCCTGAGGCTCACAGGACAGTCAGCAGGAGA
GCAGGCAGGCCCGCGACACCTGGGAGGAATGCTTTGCCTCGTCCTGTGTACTCACCTCAGGCTT
CTGCATGCTCTGCTGCCCTTGTGCCCTGGTGTGCTGCCTCTGCCAATGTGAAAACACAATAAAG
TGTATTTTTTTACGGAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001270568 ⟹ NP_001257497

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	167,191,557 - 167,196,642 (-)	NCBI
Rnor_6.0	3	175,474,310 - 175,479,395 (-)	NCBI
Rnor_5.0	3	181,639,287 - 181,644,372 (+)	NCBI
Celera	3	165,383,487 - 165,388,550 (+)	NCBI

Sequence:

show sequence

CGGGCAGATCGCGGGGCGCACTCGGTTGCGCGCTGAGCTAGGGGTGCACCGACGCACCGCGGGC
GGCTGGAGCTCGGCTTTGCTCTCGCTGCAGCAGCCGCGCCGCCCGCCCCACTCCGCTCAGATTC
CGACACCAGCCCCCTCTGGATCGCCCTCCTGGACTCTAGCCCGGGCTCTTGCTCCGACCCCGCG
GACCATGCTCCGGGCGCCCCCCGGAAAACCGGGCTGGGCGAAGAGCCGGCAAAGATTAGGCTCA
CGAGCGGGGGCCCCACCCGGCCACCCAGCTCTCCGCCCGTGCCCTGCCCGGTGTCCCCGAGCCG
TGTGAGCCTGCTGGGCCATGGAGCGCGCGCCGCCCGACGGGCTGATGAACGCGTCGGGCACTCT
GGCCGGAGAGGCGGCGGCTGCAGGCGGGGCGCGCGGCTTCTCGGCTGCCTGGACCGCTGTCCTG
GCTGCGCTCATGGCGCTGCTCATCGTGGCCACAGTACTGGGCAACGCGCTGGTCATGCTCGCCT
TCGTGGCGGATTCGAGCCTCCGCACCCAGAACAACTTCTTTCTGCTCAACCTCGCCATCTCCGA
CTTCCTCGTGGGTGCCTTCTGCATCCCATTGTACGTACCCTATGTGCTGACCGGCCGTTGGACC
TTCGGCCGGGGCCTCTGCAAGCTGTGGCTGGTGGTAGACTACCTACTGTGTGCCTCCTCGGTCT
TCAACATCGTACTCATCAGCTATGACCGATTCCTGTCAGTCACTCGAGCTGTCTCCTACAGGGC
CCAGCAGGGGGACACGAGACGGGCCGTTCGGAAGATGGCACTGGTGTGGGTGCTGGCCTTCCTG
CTGTATGGGCCTGCCATCCTGAGTTGGGAGTACCTGTCTGGTGGCAGTTCCATCCCCGAGGGCC
ACTGCTATGCTGAGTTCTTCTACAACTGGTACTTTCTCATCACGGCCTCCACCCTCGAGTTCTT
CACGCCCTTCCTCAGCGTTACCTTCTTCAACCTCAGCATCTACCTGAACATCCAGAGGCGCACC
CGCCTTCGGCTTGATGGGGGCCGTGAGGCTGGCCCAGAACCCCCACCAGATGCCCAGCCCTCGC
CACCTCCAGCTCCCCCCAGCTGCTGGGGCTGCTGGCCAAAAGGGCATGGCGAGGCCATGCCGTT
GCACAGGGGCTCCAAGCCATCAGCATCTTCAGCATCCCTGGAGAAGCGCATGAAGATGGTGTCC
CAGAGCATCACCCAGCGCTTCCGGCTGTCGCGGGACAAGAAGGTGGCCAAGTCGCTGGCCATCA
TCGTGAGCATCTTTGGGCTCTGCTGGGCGCCGTACACGCTCCTAATGATCATCCGAGCTGCTTG
CCATGGCCGCTGCATCCCCGATTACTGTGTCGAGCGCCTCGGGAAACTTGAAGCTTCTCTGCTC
CTTCCACTCTGGATGTTTTCAGGAAGATGGAGGAGAAGAAAACACGTCTGTGAACTTGATGTTC
CTTGGATGTTTAATCAAGAGAGACAAAATTGCCGAGGAGCTCGGGGCTGGATTGGCAGGTGTGG
GCTCCCACGCCCTCCTCCCTCAGTGCTGCAGCTTCCGGCTGAGCCGCGCCAGCTGCTTCTGCCT
GCCCCGCCCCCAGGCTTGGGACGATGGCCCTGCCCTGCTTGCCCCGTCTGTACAATCAGAATTT
GGGGGTGGGTGGTTATGGGGTAGAGCGGCTCTTCACTGTGCCCTAAAGGTCCTGAGGCTCACAG
GACAGTCAGCAGGAGAGCAGGCAGGCCCGCGACACCTGGGAGGAATGCTTTGCCTCGTCCTGTG
TACTCACCTCAGGCTTCTGCATGCTCTGCTGCCCTTGTGCCCTGGTGTGCTGCCTCTGCCAATG
TGAAAACACAATAAAGTGTATTTTTTTACGGAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001270569 ⟹ NP_001257498

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	167,191,557 - 167,196,642 (-)	NCBI
Rnor_6.0	3	175,474,310 - 175,479,395 (-)	NCBI
Rnor_5.0	3	181,639,287 - 181,644,372 (+)	NCBI
Celera	3	165,383,487 - 165,388,550 (+)	NCBI

Sequence:

show sequence

CGGGCAGATCGCGGGGCGCACTCGGTTGCGCGCTGAGCTAGGGGTGCACCGACGCACCGCGGGC
GGCTGGAGCTCGGCTTTGCTCTCGCTGCAGCAGCCGCGCCGCCCGCCCCACTCCGCTCAGATTC
CGACACCAGCCCCCTCTGGATCGCCCTCCTGGACTCTAGCCCGGGCTCTTGCTCCGACCCCGCG
GACCATGCTCCGGGCGCCCCCCGGAAAACCGGGCTGGGCGAAGAGCCGGCAAAGATTAGGCTCA
CGAGCGGGGGCCCCACCCGGCCACCCAGCTCTCCGCCCGTGCCCTGCCCGGTGTCCCCGAGCCG
TGTGAGCCTGCTGGGCCATGGAGCGCGCGCCGCCCGACGGGCTGATGAACGCGTCGGGCACTCT
GGCCGGAGAGGCGGCGGCTGCAGGCGGGGCGCGCGGCTTCTCGGCTGCCTGGACCGCTGTCCTG
GCTGCGCTCATGGCGCTGCTCATCGTGGCCACAGTACTGGGCAACGCGCTGGTCATGCTCGCCT
TCGTGGCGGATTCGAGCCTCCGCACCCAGAACAACTTCTTTCTGCTCAACCTCGCCATCTCCGA
CTTCCTCGTGGGTGCCTTCTGCATCCCATTGTACGTACCCTATGTGCTGACCGGCCGTTGGACC
TTCGGCCGGGGCCTCTGCAAGCTGTGGCTGGTGGTAGACTACCTACTGTGTGCCTCCTCGGTCT
TCAACATCGTACTCATCAGCTATGACCGATTCCTGTCAGTCACTCGAGCTGTCTCCTACAGGGC
CCAGCAGGGGGACACGAGACGGGCCGTTCGGAAGATGGCACTGGTGTGGGTGCTGGCCTTCCTG
CTGTATGGGCCTGCCATCCTGAGTTGGGAGTACCTGTCTGGTGGCAGTTCCATCCCCGAGGGCC
ACTGCTATGCTGAGTTCTTCTACAACTGGTACTTTCTCATCACGGCCTCCACCCTCGAGTTCTT
CACGCCCTTCCTCAGCGTTACCTTCTTCAACCTCAGCATCTACCTGAACATCCAGAGGCGCACC
CGCCTTCGGCTTGATGGGGGCCGTGAGGCTGGCCCAGAACCCCCACCAGATGCCCAGCCCTCGC
CACCTCCAGCTCCCCCCAGCTGCTGGGGCTGCTGGCCAAAAGGGCATGGCGAGGCCATGCCGTT
GCACAGCTCCTCAAGGGGCACTGAGAGGCCACGCTCACTCAAAAGGGGCTCCAAGCCATCAGCA
TCTTCAGCATCCCTGGAGAAGCGCATGAAGATGGTGTCCCAGAGCATCACCCAGCGCTTCCGGC
TGTCGCGGGACAAGAAGGTGGCCAAGTCGCTGGCCATCATCGTGAGCATCTTTGGGCTCTGCTG
GGCGCCGTACACGCTCCTAATGATCATCCGAGCTGCTTGCCATGGCCGCTGCATCCCCGATTAC
TGGTACGAGACGTCCTTCTGGCTTCTGTGGGCCAACTCGGCCGTCAACCCCGTCCTCTACCCAC
TGTGCCACTACAGCTTCCGCAGAGCCTTCACCAAGCTCCTCTGCCCCCAGAAGCTCAAGGTCCA
GCCCCACGGCTCCCTGGAGCAGTGCTGGAAGTGAGCAGCTGCCCCACCCTTCTGAGGCCAGGCC
CTTGTACTTGTTTGAGTGGGCAGCCGGAGCGTGGGCGGGGCCCTGGTCCATGCTCCGCTCCAAA
TGCCATGGCGGCCTCTTAGATCATCAACCCCGCAGTGGGGTAGCATGGCAGGTGGGCCAAGAGC
CCTAGTTGGTGGAGCTAGAGTGTGCTGGTTAGCTCTGCCGCCACATTCTCCTTCACCACACAGA
AGAGACAATCCAGGAGTCCCAGGCATGCCTTCCACCTACACACACACACACACACACACACACA
CACACACACACACACACCACAGTGCAGTGCCAGTGATGTCCCCTTTTGCATATTTAGTGGTTGG
TGTCCTCCCTAATGCAAACCTCGGTGTGTGCTCCCGGCTCCGGCCCTGGCAATGCGTGCGTGCG
CCCTGCATGTGCTCACACCCGCCACACACCCGCCCGCCACACACTTGCAACACCTCCTCTCTCC
CAGAAGAGCTGGGGACGATGCCCTTTGCTGCCACTGTCTCTTGCTTAATCCCAGAGCCTGGCTC
CTTATCCCCCACTCTCCCTTCAACTCTGCCCCACAAAGTGTCGAGCGCCTCGGGAAACTTGAAG
CTTCTCTGCTCCTTCCACTCTGGATGTTTTCAGGAAGATGGAGGAGAAGAAAACACGTCTGTGA
ACTTGATGTTCCTTGGATGTTTAATCAAGAGAGACAAAATTGCCGAGGAGCTCGGGGCTGGATT
GGCAGGTGTGGGCTCCCACGCCCTCCTCCCTCAGTGCTGCAGCTTCCGGCTGAGCCGCGCCAGC
TGCTTCTGCCTGCCCCGCCCCCAGGCTTGGGACGATGGCCCTGCCCTGCTTGCCCCGTCTGTAC
AATCAGAATTTGGGGGTGGGTGGTTATGGGGTAGAGCGGCTCTTCACTGTGCCCTAAAGGTCCT
GAGGCTCACAGGACAGTCAGCAGGAGAGCAGGCAGGCCCGCGACACCTGGGAGGAATGCTTTGC
CTCGTCCTGTGTACTCACCTCAGGCTTCTGCATGCTCTGCTGCCCTTGTGCCCTGGTGTGCTGC
CTCTGCCAATGTGAAAACACAATAAAGTGTATTTTTTTACGGAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001270570 ⟹ NP_001257499

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	167,191,557 - 167,196,642 (-)	NCBI
Rnor_6.0	3	175,474,310 - 175,479,395 (-)	NCBI
Rnor_5.0	3	181,639,287 - 181,644,372 (+)	NCBI
Celera	3	165,383,487 - 165,388,550 (+)	NCBI

Sequence:

show sequence

CGGGCAGATCGCGGGGCGCACTCGGTTGCGCGCTGAGCTAGGGGTGCACCGACGCACCGCGGGC
GGCTGGAGCTCGGCTTTGCTCTCGCTGCAGCAGCCGCGCCGCCCGCCCCACTCCGCTCAGATTC
CGACACCAGCCCCCTCTGGATCGCCCTCCTGGACTCTAGCCCGGGCTCTTGCTCCGACCCCGCG
GACCATGCTCCGGGCGCCCCCCGGAAAACCGGGCTGGGCGAAGAGCCGGCAAAGATTAGGCTCA
CGAGCGGGGGCCCCACCCGGCCACCCAGCTCTCCGCCCGTGCCCTGCCCGGTGTCCCCGAGCCG
TGTGAGCCTGCTGGGCCATGGAGCGCGCGCCGCCCGACGGGCTGATGAACGCGTCGGGCACTCT
GGCCGGAGAGGCGGCGGCTGCAGGCGGGGCGCGCGGCTTCTCGGCTGCCTGGACCGCTGTCCTG
GCTGCGCTCATGGCGCTGCTCATCGTGGCCACAGTACTGGGCAACGCGCTGGTCATGCTCGCCT
TCGTGGCGGATTCGAGCCTCCGCACCCAGAACAACTTCTTTCTGCTCAACCTCGCCATCTCCGA
CTTCCTCGTGGGTGCCTTCTGCATCCCATTGTACGTACCCTATGTGCTGACCGGCCGTTGGACC
TTCGGCCGGGGCCTCTGCAAGCTGTGGCTGGTGGTAGACTACCTACTGTGTGCCTCCTCGGTCT
TCAACATCGTACTCATCAGCTATGACCGATTCCTGTCAGTCACTCGAGCTGTCTCCTACAGGGC
CCAGCAGGGGGACACGAGACGGGCCGTTCGGAAGATGGCACTGGTGTGGGTGCTGGCCTTCCTG
CTGTATGGGCCTGCCATCCTGAGTTGGGAGTACCTGTCTGGTGGCAGTTCCATCCCCGAGGGCC
ACTGCTATGCTGAGTTCTTCTACAACTGGTACTTTCTCATCACGGCCTCCACCCTCGAGTTCTT
CACGCCCTTCCTCAGCGTTACCTTCTTCAACCTCAGCATCTACCTGAACATCCAGAGGCGCACC
CGCCTTCGGCTTGATGGGGGCCGTGAGGCTGGCCCAGAACCCCCACCAGATGCCCAGCCCTCGC
CACCTCCAGCTCCCCCCAGCTGCTGGGGCTGCTGGCCAAAAGGGCATGGCGAGGCCATGCCGTT
GCACAGGGGCTCCAAGCCATCAGCATCTTCAGCATCCCTGGAGAAGCGCATGAAGATGGTGTCC
CAGAGCATCACCCAGCGCTTCCGGCTGTCGCGGGACAAGAAGGTGGCCAAGTCGCTGGCCATCA
TCGTGAGCATCTTTGGGCTCTGCTGGGCGCCGTACACGCTCCTAATGATCATCCGAGCTGCTTG
CCATGGCCGCTGCATCCCCGATTACTGAGCCTGGCTCCTTATCCCCCACTCTCCCTTCAACTCT
GCCCCACAAAGTGTCGAGCGCCTCGGGAAACTTGAAGCTTCTCTGCTCCTTCCACTCTGGATGT
TTTCAGGAAGATGGAGGAGAAGAAAACACGTCTGTGAACTTGATGTTCCTTGGATGTTTAATCA
AGAGAGACAAAATTGCCGAGGAGCTCGGGGCTGGATTGGCAGGTGTGGGCTCCCACGCCCTCCT
CCCTCAGTGCTGCAGCTTCCGGCTGAGCCGCGCCAGCTGCTTCTGCCTGCCCCGCCCCCAGGCT
TGGGACGATGGCCCTGCCCTGCTTGCCCCGTCTGTACAATCAGAATTTGGGGGTGGGTGGTTAT
GGGGTAGAGCGGCTCTTCACTGTGCCCTAAAGGTCCTGAGGCTCACAGGACAGTCAGCAGGAGA
GCAGGCAGGCCCGCGACACCTGGGAGGAATGCTTTGCCTCGTCCTGTGTACTCACCTCAGGCTT
CTGCATGCTCTGCTGCCCTTGTGCCCTGGTGTGCTGCCTCTGCCAATGTGAAAACACAATAAAG
TGTATTTTTTTACGGAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_053506 ⟹ NP_445958

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	167,191,557 - 167,196,642 (-)	NCBI
Rnor_6.0	3	175,474,310 - 175,479,395 (-)	NCBI
Rnor_5.0	3	181,639,287 - 181,644,372 (+)	NCBI
RGSC_v3.4	3	169,154,980 - 169,160,064 (-)	RGD
Celera	3	165,383,487 - 165,388,550 (+)	NCBI

Sequence:

show sequence

CGGGCAGATCGCGGGGCGCACTCGGTTGCGCGCTGAGCTAGGGGTGCACCGACGCACCGCGGGC
GGCTGGAGCTCGGCTTTGCTCTCGCTGCAGCAGCCGCGCCGCCCGCCCCACTCCGCTCAGATTC
CGACACCAGCCCCCTCTGGATCGCCCTCCTGGACTCTAGCCCGGGCTCTTGCTCCGACCCCGCG
GACCATGCTCCGGGCGCCCCCCGGAAAACCGGGCTGGGCGAAGAGCCGGCAAAGATTAGGCTCA
CGAGCGGGGGCCCCACCCGGCCACCCAGCTCTCCGCCCGTGCCCTGCCCGGTGTCCCCGAGCCG
TGTGAGCCTGCTGGGCCATGGAGCGCGCGCCGCCCGACGGGCTGATGAACGCGTCGGGCACTCT
GGCCGGAGAGGCGGCGGCTGCAGGCGGGGCGCGCGGCTTCTCGGCTGCCTGGACCGCTGTCCTG
GCTGCGCTCATGGCGCTGCTCATCGTGGCCACAGTACTGGGCAACGCGCTGGTCATGCTCGCCT
TCGTGGCGGATTCGAGCCTCCGCACCCAGAACAACTTCTTTCTGCTCAACCTCGCCATCTCCGA
CTTCCTCGTGGGTGCCTTCTGCATCCCATTGTACGTACCCTATGTGCTGACCGGCCGTTGGACC
TTCGGCCGGGGCCTCTGCAAGCTGTGGCTGGTGGTAGACTACCTACTGTGTGCCTCCTCGGTCT
TCAACATCGTACTCATCAGCTATGACCGATTCCTGTCAGTCACTCGAGCTGTCTCCTACAGGGC
CCAGCAGGGGGACACGAGACGGGCCGTTCGGAAGATGGCACTGGTGTGGGTGCTGGCCTTCCTG
CTGTATGGGCCTGCCATCCTGAGTTGGGAGTACCTGTCTGGTGGCAGTTCCATCCCCGAGGGCC
ACTGCTATGCTGAGTTCTTCTACAACTGGTACTTTCTCATCACGGCCTCCACCCTCGAGTTCTT
CACGCCCTTCCTCAGCGTTACCTTCTTCAACCTCAGCATCTACCTGAACATCCAGAGGCGCACC
CGCCTTCGGCTTGATGGGGGCCGTGAGGCTGGCCCAGAACCCCCACCAGATGCCCAGCCCTCGC
CACCTCCAGCTCCCCCCAGCTGCTGGGGCTGCTGGCCAAAAGGGCATGGCGAGGCCATGCCGTT
GCACAGGTATGGGGTGGGTGAGGCAGGCCCTGGTGTTGAGGCTGGGGAGGCTGCCCTCGGGGGT
GGCAGTGGTGGAGGTGCTGCTGCCTCGCCCACCTCCAGCTCTGGCAGCTCCTCAAGGGGCACTG
AGAGGCCACGCTCACTCAAAAGGGGCTCCAAGCCATCAGCATCTTCAGCATCCCTGGAGAAGCG
CATGAAGATGGTGTCCCAGAGCATCACCCAGCGCTTCCGGCTGTCGCGGGACAAGAAGGTGGCC
AAGTCGCTGGCCATCATCGTGAGCATCTTTGGGCTCTGCTGGGCGCCGTACACGCTCCTAATGA
TCATCCGAGCTGCTTGCCATGGCCGCTGCATCCCCGATTACTGGTACGAGACGTCCTTCTGGCT
TCTGTGGGCCAACTCGGCCGTCAACCCCGTCCTCTACCCACTGTGCCACTACAGCTTCCGCAGA
GCCTTCACCAAGCTCCTCTGCCCCCAGAAGCTCAAGGTCCAGCCCCACGGCTCCCTGGAGCAGT
GCTGGAAGTGAGCAGCTGCCCCACCCTTCTGAGGCCAGGCCCTTGTACTTGTTTGAGTGGGCAG
CCGGAGCGTGGGCGGGGCCCTGGTCCATGCTCCGCTCCAAATGCCATGGCGGCCTCTTAGATCA
TCAACCCCGCAGTGGGGTAGCATGGCAGGTGGGCCAAGAGCCCTAGTTGGTGGAGCTAGAGTGT
GCTGGTTAGCTCTGCCGCCACATTCTCCTTCACCACACAGAAGAGACAATCCAGGAGTCCCAGG
CATGCCTTCCACCTACACACACACACACACACACACACACACACACACACACACACACCACAGT
GCAGTGCCAGTGATGTCCCCTTTTGCATATTTAGTGGTTGGTGTCCTCCCTAATGCAAACCTCG
GTGTGTGCTCCCGGCTCCGGCCCTGGCAATGCGTGCGTGCGCCCTGCATGTGCTCACACCCGCC
ACACACCCGCCCGCCACACACTTGCAACACCTCCTCTCTCCCAGAAGAGCTGGGGACGATGCCC
TTTGCTGCCACTGTCTCTTGCTTAATCCCAGAGCCTGGCTCCTTATCCCCCACTCTCCCTTCAA
CTCTGCCCCACAAAGTGTCGAGCGCCTCGGGAAACTTGAAGCTTCTCTGCTCCTTCCACTCTGG
ATGTTTTCAGGAAGATGGAGGAGAAGAAAACACGTCTGTGAACTTGATGTTCCTTGGATGTTTA
ATCAAGAGAGACAAAATTGCCGAGGAGCTCGGGGCTGGATTGGCAGGTGTGGGCTCCCACGCCC
TCCTCCCTCAGTGCTGCAGCTTCCGGCTGAGCCGCGCCAGCTGCTTCTGCCTGCCCCGCCCCCA
GGCTTGGGACGATGGCCCTGCCCTGCTTGCCCCGTCTGTACAATCAGAATTTGGGGGTGGGTGG
TTATGGGGTAGAGCGGCTCTTCACTGTGCCCTAAAGGTCCTGAGGCTCACAGGACAGTCAGCAG
GAGAGCAGGCAGGCCCGCGACACCTGGGAGGAATGCTTTGCCTCGTCCTGTGTACTCACCTCAG
GCTTCTGCATGCTCTGCTGCCCTTGTGCCCTGGTGTGCTGCCTCTGCCAATGTGAAAACACAAT
AAAGTGTATTTTTTTACGGAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_073042

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	167,191,557 - 167,196,642 (-)	NCBI
Rnor_6.0	3	175,474,310 - 175,479,395 (-)	NCBI
Rnor_5.0	3	181,639,287 - 181,644,372 (+)	NCBI
Celera	3	165,383,487 - 165,388,550 (+)	NCBI

Sequence:

show sequence

CGGGCAGATCGCGGGGCGCACTCGGTTGCGCGCTGAGCTAGGGGTGCACCGACGCACCGCGGGC
GGCTGGAGCTCGGCTTTGCTCTCGCTGCAGCAGCCGCGCCGCCCGCCCCACTCCGCTCAGATTC
CGACACCAGCCCCCTCTGGATCGCCCTCCTGGACTCTAGCCCGGGCTCTTGCTCCGACCCCGCG
GACCATGCTCCGGGCGCCCCCCGGAAAACCGGGCTGGGCGAAGAGCCGGCAAAGATTAGGCTCA
CGAGCGGGGGCCCCACCCGGCCACCCAGCTCTCCGCCCGTGCCCTGCCCGGTGTCCCCGAGCCG
TGTGAGCCTGCTGGGCCATGGAGCGCGCGCCGCCCGACGGGCTGATGAACGCGTCGGGCACTCT
GGCCGGAGAGGCGGCGGCTGCAGGCGGGGCGCGCGGCTTCTCGGCTGCCTGGACCGCTGTCCTG
GCTGCGCTCATGGCGCTGCTCATCGTGGCCACAGTACTGGGCAACGCGCTGGTCATGCTCGCCT
TCGTGGCGGATTCGAGCCTCCGCACCCAGAACAACTTCTTTCTGCTCAACCTCGCCATCTCCGA
CTTCCTCGTGCCTTCTGCATCCCATTGTACGTACCCTATGTGCTGACCGGCCGTTGGACCTTCG
GCCGGGGCCTCTGCAAGCTGTGGCTGGTGGTAGACTACCTACTGTGTGCCTCCTCGGTCTTCAA
CATCGTACTCATCAGCTATGACCGATTCCTGTCAGTCACTCGAGCTGTCTCCTACAGGGCCCAG
CAGGGGGACACGAGACGGGCCGTTCGGAAGATGGCACTGGTGTGGGTGCTGGCCTTCCTGCTGT
ATGGGCCTGCCATCCTGAGTTGGGAGTACCTGTCTGGTGGCAGTTCCATCCCCGAGGGCCACTG
CTATGCTGAGTTCTTCTACAACTGGTACTTTCTCATCACGGCCTCCACCCTCGAGTTCTTCACG
CCCTTCCTCAGCGTTACCTTCTTCAACCTCAGCATCTACCTGAACATCCAGAGGCGCACCCGCC
TTCGGCTTGATGGGGGCCGTGAGGCTGGCCCAGAACCCCCACCAGATGCCCAGCCCTCGCCACC
TCCAGCTCCCCCCAGCTGCTGGGGCTGCTGGCCAAAAGGGCATGGCGAGGCCATGCCGTTGCAC
AGGTATGGGGTGGGTGAGGCAGGCCCTGGTGTTGAGGCTGGGGAGGCTGCCCTCGGGGGTGGCA
GTGGTGGAGGTGCTGCTGCCTCGCCCACCTCCAGCTCTGGCAGCTCCTCAAGGGGCACTGAGAG
GCCACGCTCACTCAAAAGGGGCTCCAAGCCATCAGCATCTTCAGCATCCCTGGAGAAGCGCATG
AAGATGGTGTCCCAGAGCATCACCCAGCGCTTCCGGCTGTCGCGGGACAAGAAGGTGGCCAAGT
CGCTGGCCATCATCGTGAGCATCTTTGGGCTCTGCTGGGCGCCGTACACGCTCCTAATGATCAT
CCGAGCTGCTTGCCATGGCCGCTGCATCCCCGATTACTGGTACGAGACGTCCTTCTGGCTTCTG
TGGGCCAACTCGGCCGTCAACCCCGTCCTCTACCCACTGTGCCACTACAGCTTCCGCAGAGCCT
TCACCAAGCTCCTCTGCCCCCAGAAGCTCAAGGTCCAGCCCCACGGCTCCCTGGAGCAGTGCTG
GAAGTGAGCAGCTGCCCCACCCTTCTGAGGCCAGGCCCTTGTACTTGTTTGAGTGGGCAGCCGG
AGCGTGGGCGGGGCCCTGGTCCATGCTCCGCTCCAAATGCCATGGCGGCCTCTTAGATCATCAA
CCCCGCAGTGGGGTAGCATGGCAGGTGGGCCAAGAGCCCTAGTTGGTGGAGCTAGAGTGTGCTG
GTTAGCTCTGCCGCCACATTCTCCTTCACCACACAGAAGAGACAATCCAGGAGTCCCAGGCATG
CCTTCCACCTACACACACACACACACACACACACACACACACACACACACACACCACAGTGCAG
TGCCAGTGATGTCCCCTTTTGCATATTTAGTGGTTGGTGTCCTCCCTAATGCAAACCTCGGTGT
GTGCTCCCGGCTCCGGCCCTGGCAATGCGTGCGTGCGCCCTGCATGTGCTCACACCCGCCACAC
ACCCGCCCGCCACACACTTGCAACACCTCCTCTCTCCCAGAAGAGCTGGGGACGATGCCCTTTG
CTGCCACTGTCTCTTGCTTAATCCCAGAGCCTGGCTCCTTATCCCCCACTCTCCCTTCAACTCT
GCCCCACAAAGTGTCGAGCGCCTCGGGAAACTTGAAGCTTCTCTGCTCCTTCCACTCTGGATGT
TTTCAGGAAGATGGAGGAGAAGAAAACACGTCTGTGAACTTGATGTTCCTTGGATGTTTAATCA
AGAGAGACAAAATTGCCGAGGAGCTCGGGGCTGGATTGGCAGGTGTGGGCTCCCACGCCCTCCT
CCCTCAGTGCTGCAGCTTCCGGCTGAGCCGCGCCAGCTGCTTCTGCCTGCCCCGCCCCCAGGCT
TGGGACGATGGCCCTGCCCTGCTTGCCCCGTCTGTACAATCAGAATTTGGGGGTGGGTGGTTAT
GGGGTAGAGCGGCTCTTCACTGTGCCCTAAAGGTCCTGAGGCTCACAGGACAGTCAGCAGGAGA
GCAGGCAGGCCCGCGACACCTGGGAGGAATGCTTTGCCTCGTCCTGTGTACTCACCTCAGGCTT
CTGCATGCTCTGCTGCCCTTGTGCCCTGGTGTGCTGCCTCTGCCAATGTGAAAACACAATAAAG
TGTATTTTTTTACGGAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008762548 ⟹ XP_008760770

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	167,191,551 - 167,194,873 (-)	NCBI
Rnor_6.0	3	175,474,310 - 175,478,438 (-)	NCBI

Sequence:

show sequence

CTGAGGAAGGGGACCGTGGGCAAGGAGGGGGTGAGATGAGGGAAATGCTCCGAGGAGCTCGTTC
TCACGTGTCCAAGCTCTGCTCCCAACTGGGGGGGGGGCGGGGCGCGCGGTGGGGGCCGGAGCGC
CAGACACCTGTTGGGGCTGAGAGCTGCTGCGTCTACCAGACGCTGGAAGCCGGTTTGGGCGGTG
AGAGCGGCTGGCGCGGCTGCAGCCAAGAACCCTTTAAGCCAAGAAAAAAGCTTTCTCGGTTTTT
AAGCTGAGAAGGGAGGCTGTCCAACAGCAAGGGTAGGGATTGGATGATCAGCTCCAGAGCCAGT
CAAGTCAGGGAGGACATGTATCCCTTTCCCCTCTTTTGGCCGTTGGTAGGGCTGGGAGAAGCCC
AGGTTCTGTGTCCAGCAGTCCCCGCATGGAGGTCCTTCCTCCTGCCGCCAGGTCCAGAAAGACA
TTGGTGGGCTGGAGGCTGGCAGCTGCCCGGTTGTAGGGTGACTAGGAGGATAAATGAGATAGAG
TACTGATCCTAGAAAGGTGGCTACCCTATGAAGGCCAGGCTTTGCCCTCTCTCCATGTGGTCGG
TCTGATCCCGAATCCTGAGCCATGGTCCCACCACAGCTGCTTTCCCATAGGTGCCTTCTGCATC
CCATTGTACGTACCCTATGTGCTGACCGGCCGTTGGACCTTCGGCCGGGGCCTCTGCAAGCTGT
GGCTGGTGGTAGACTACCTACTGTGTGCCTCCTCGGTCTTCAACATCGTACTCATCAGCTATGA
CCGATTCCTGTCAGTCACTCGAGCTGTGAGTTCTGGGATGTGGGCGTTAGAGTTTTACTCTGTG
TGTTGGAGAGCAGTGGACAGGGTATGGCTGCCCCTGGGTCGTAGGCAGATATCTGGTGGGTTTG
CTCCCTTTTGACATGTGGGCCATTTTTCAGTGACCTATGACTGCTAGCTAGTAGTGCTAGCATG
AGACAGGAGCAGTTCCATGCTCTTGCAGGAAGAGGTGTAAGGGTTCAGTCTCTATCCTGGGCAG
GTTCAGGATTCCTGGAACTGAAGGAGGGTCTTCATCCTTCCCACTTTTGTGTACATGAAGGTGT
GCACATAGAACACCAGGAAGCCACAGCTCCTAGCTGCACAATTTCCCTTAAATGGCTGTTGTAA
GATAGCCCTGGGTCAGCGGACACTGGCGTGGAGTGGGGCTTAAGCTGCTGCTTCTTCAACTCTT
CTCGGTGGCTCACTCACTCCAGGCTTTGTCCAAATGTATCCTGAGGATCAGCGGCAAAGAGCAC
CGGCATAGAGCCCTCTCGAGCTTCCCTAGGTCCCTTCTACCATCCCCGAGAAACAGCAAGACAG
TGACAAAATCACAGGGCTATTATTGTGACTGAGGCACCCGGTACAAAGCTGGCATGTGGCAGGT
AACCTGTGTAGTTAGCTTGTGGTTCCCAAGGTGGCTGTCAAGGACACTTGTCTCAGCTGTGCCT
CTGAGGCCCCTCAGCAGGATTTTTGGCCCCTCCTGCCACTCTGCCCCTTGCTTATTTGATGCAC
TTGGAGCTTAGTTTGTTCCTTGGAAAAGACTAGATAGCCCCACCTCCCTACCTTTTCTAGCCAT
TCACCTTTTAGAGAAGAAGACAAAATACTTACTTCCCTCATGTGTGTGTGTGCGTGGGGTGGGG
GGCTCTCTCTAGCAATGGGTCAGCAGGTTTCCCTTCTGTATTCTCAGCTCCAGTAGTGAGAGGA
AGGAAATACTGGTGCAGAGTCGGGACAAAGCCCTTCCTTTTCAGCACAGCAAACCGTTGAAGAC
AGCTCTCTGGCCCTTGCAAGAAGCCTAACATCAGAAACAGTTGTGTGTGGTCTCTGGGTGTGGC
CAGTGCCAGTGGTGCAAGCAAAGGCAGGGGGACCCCATGGAGCTGGTGGAGGATGGTGAAGAGA
CAGGATTCTGACTGGTCGTGGTCTCCTACAGGGCCCAGCAGGGGGACACGAGACGGGCCGTTCG
GAAGATGGCACTGGTGTGGGTGCTGGCCTTCCTGCTGTATGGGCCTGCCATCCTGAGTTGGGAG
TACCTGTCTGGTGGCAGTTCCATCCCCGAGGGCCACTGCTATGCTGAGTTCTTCTACAACTGGT
ACTTTCTCATCACGGCCTCCACCCTCGAGTTCTTCACGCCCTTCCTCAGCGTTACCTTCTTCAA
CCTCAGCATCTACCTGAACATCCAGAGGCGCACCCGCCTTCGGCTTGATGGGGGCCGTGAGGCT
GGCCCAGAACCCCCACCAGATGCCCAGCCCTCGCCACCTCCAGCTCCCCCCAGCTGCTGGGGCT
GCTGGCCAAAAGGGCATGGCGAGGCCATGCCGTTGCACAGGTATGGGGTGGGTGAGGCAGGCCC
TGGTGTTGAGGCTGGGGAGGCTGCCCTCGGGGGTGGCAGTGGTGGAGGTGCTGCTGCCTCGCCC
ACCTCCAGCTCTGGCAGCTCCTCAAGGGGCACTGAGAGGCCACGCTCACTCAAAAGGGGCTCCA
AGCCATCAGCATCTTCAGCATCCCTGGAGAAGCGCATGAAGATGGTGTCCCAGAGCATCACCCA
GCGCTTCCGGCTGTCGCGGGACAAGAAGGTGGCCAAGTCGCTGGCCATCATCGTGAGCATCTTT
GGGCTCTGCTGGGCGCCGTACACGCTCCTAATGATCATCCGAGCTGCTTGCCATGGCCGCTGCA
TCCCCGATTACTGTGTCGAGCGCCTCGGGAAACTTGAAGCTTCTCTGCTCCTTCCACTCTGGAT
GTTTTCAGGAAGATGGAGGAGAAGAAAACACGTCTGTGAACTTGATGTTCCTTGGATGTTTAAT
CAAGAGAGACAAAATTGCCGAGGAGCTCGGGGCTGGATTGGCAGGTGTGGGCTCCCACGCCCTC
CTCCCTCAGTGCTGCAGCTTCCGGCTGAGCCGCGCCAGCTGCTTCTGCCTGCCCCGCCCCCAGG
CTTGGGACGATGGCCCTGCCCTGCTTGCCCCGTCTGTACAATCAGAATTTGGGGGTGGGTGGTT
ATGGGGTAGAGCGGCTCTTCACTGTGCCCTAAAGGTCCTGAGGCTCACAGGACAGTCAGCAGGA
GAGCAGGCAGGCCCGCGACACCTGGGAGGAATGCTTTGCCTCGTCCTGTGTACTCACCTCAGGC
TTCTGCATGCTCTGCTGCCCTTGTGCCCTGGTGTGCTGCCTCTGCCAATGTGAAAACACAATAA
AGTGTATTTTTTTACGGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001257493	(Get FASTA)	NCBI Sequence Viewer
	NP_001257494	(Get FASTA)	NCBI Sequence Viewer
	NP_001257495	(Get FASTA)	NCBI Sequence Viewer
	NP_001257496	(Get FASTA)	NCBI Sequence Viewer
	NP_001257497	(Get FASTA)	NCBI Sequence Viewer
	NP_001257498	(Get FASTA)	NCBI Sequence Viewer
	NP_001257499	(Get FASTA)	NCBI Sequence Viewer
	NP_445958	(Get FASTA)	NCBI Sequence Viewer
	XP_008760770	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF82086	(Get FASTA)	NCBI Sequence Viewer
	AAH87707	(Get FASTA)	NCBI Sequence Viewer
	AAK02069	(Get FASTA)	NCBI Sequence Viewer
	AAK02070	(Get FASTA)	NCBI Sequence Viewer
	AAZ93637	(Get FASTA)	NCBI Sequence Viewer
	AAZ93638	(Get FASTA)	NCBI Sequence Viewer
	BAA88765	(Get FASTA)	NCBI Sequence Viewer
	BAA88766	(Get FASTA)	NCBI Sequence Viewer
	BAA88767	(Get FASTA)	NCBI Sequence Viewer
	BAA88768	(Get FASTA)	NCBI Sequence Viewer
	EDL88825	(Get FASTA)	NCBI Sequence Viewer
	EDL88826	(Get FASTA)	NCBI Sequence Viewer
	EDL88827	(Get FASTA)	NCBI Sequence Viewer
	EDL88828	(Get FASTA)	NCBI Sequence Viewer
	EDL88829	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069003
	ENSRNOP00000071828
	ENSRNOP00000071828.1
	ENSRNOP00000090011
GenBank Protein	Q9QYN8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_445958 ⟸ NM_053506
- Peptide Label:	isoform H3A
- UniProtKB:	Q9QYN7 (UniProtKB/Swiss-Prot), Q9QYN6 (UniProtKB/Swiss-Prot), Q9QYN9 (UniProtKB/Swiss-Prot), Q9QYN8 (UniProtKB/Swiss-Prot), A6KMB7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERAPPDGLMNASGTLAGEAAAAGGARGFSAAWTAVLAALMALLIVATVLGNALVMLAFVADSS LRTQNNFFLLNLAISDFLVGAFCIPLYVPYVLTGRWTFGRGLCKLWLVVDYLLCASSVFNIVLI SYDRFLSVTRAVSYRAQQGDTRRAVRKMALVWVLAFLLYGPAILSWEYLSGGSSIPEGHCYAEF FYNWYFLITASTLEFFTPFLSVTFFNLSIYLNIQRRTRLRLDGGREAGPEPPPDAQPSPPPAPP SCWGCWPKGHGEAMPLHRYGVGEAGPGVEAGEAALGGGSGGGAAASPTSSSGSSSRGTERPRSL KRGSKPSASSASLEKRMKMVSQSITQRFRLSRDKKVAKSLAIIVSIFGLCWAPYTLLMIIRAAC HGRCIPDYWYETSFWLLWANSAVNPVLYPLCHYSFRRAFTKLLCPQKLKVQPHGSLEQCWK hide sequence

RefSeq Acc Id:	NP_001257495 ⟸ NM_001270566
- Peptide Label:	isoform H3D
- UniProtKB:	Q2VJ18 (UniProtKB/TrEMBL), A0A0G2JU84 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERAPPDGLMNASGTLAGEAAAAGGARGFSAAWTAVLAALMALLIVATVLGNALVMLAFVADSS LRTQNNFFLLNLAISDFLVGAFCIPLYVPYVLTGRWTFGRGLCKLWLVVDYLLCASSVFNIVLI SYDRFLSVTRAVSYRAQQGDTRRAVRKMALVWVLAFLLYGPAILSWEYLSGGSSIPEGHCYAEF FYNWYFLITASTLEFFTPFLSVTFFNLSIYLNIQRRTRLRLDGGREAGPEPPPDAQPSPPPAPP SCWGCWPKGHGEAMPLHRYGVGEAGPGVEAGEAALGGGSGGGAAASPTSSSGSSSRGTERPRSL KRGSKPSASSASLEKRMKMVSQSITQRFRLSRDKKVAKSLAIIVSIFGLCWAPYTLLMIIRAAC HGRCIPDYCVERLGKLEASLLLPLWMFSGRWRRRKHVCELDVPWMFNQERQNCRGARGWIGRCG LPRPPPSVLQLPAEPRQLLLPAPPPGLGRWPCPACPVCTIRIWGWVVMG hide sequence

RefSeq Acc Id:	NP_001257493 ⟸ NM_001270564
- Peptide Label:	isoform H3B
- UniProtKB:	Q541U0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERAPPDGLMNASGTLAGEAAAAGGARGFSAAWTAVLAALMALLIVATVLGNALVMLAFVADSS LRTQNNFFLLNLAISDFLVGAFCIPLYVPYVLTGRWTFGRGLCKLWLVVDYLLCASSVFNIVLI SYDRFLSVTRAVSYRAQQGDTRRAVRKMALVWVLAFLLYGPAILSWEYLSGGSSIPEGHCYAEF FYNWYFLITASTLEFFTPFLSVTFFNLSIYLNIQRRTRLRLDGGREAGPEPPPDAQPSPPPAPP SCWGCWPKGHGEAMPLHSSGSSSRGTERPRSLKRGSKPSASSASLEKRMKMVSQSITQRFRLSR DKKVAKSLAIIVSIFGLCWAPYTLLMIIRAACHGRCIPDYWYETSFWLLWANSAVNPVLYPLCH YSFRRAFTKLLCPQKLKVQPHGSLEQCWK hide sequence

RefSeq Acc Id:	NP_001257496 ⟸ NM_001270567
- Peptide Label:	isoform H3E
- UniProtKB:	Q2VJ17 (UniProtKB/TrEMBL), A0A0G2JU84 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERAPPDGLMNASGTLAGEAAAAGGARGFSAAWTAVLAALMALLIVATVLGNALVMLAFVADSS LRTQNNFFLLNLAISDFLVGAFCIPLYVPYVLTGRWTFGRGLCKLWLVVDYLLCASSVFNIVLI SYDRFLSVTRAVSYRAQQGDTRRAVRKMALVWVLAFLLYGPAILSWEYLSGGSSIPEGHCYAEF FYNWYFLITASTLEFFTPFLSVTFFNLSIYLNIQRRTRLRLDGGREAGPEPPPDAQPSPPPAPP SCWGCWPKGHGEAMPLHSSGSSSRGTERPRSLKRGSKPSASSASLEKRMKMVSQSITQRFRLSR DKKVAKSLAIIVSIFGLCWAPYTLLMIIRAACHGRCIPDYCVERLGKLEASLLLPLWMFSGRWR RRKHVCELDVPWMFNQERQNCRGARGWIGRCGLPRPPPSVLQLPAEPRQLLLPAPPPGLGRWPC PACPVCTIRIWGWVVMG hide sequence

RefSeq Acc Id:	NP_001257498 ⟸ NM_001270569
- Peptide Label:	isoform 7
- UniProtKB:	Q541U0 (UniProtKB/TrEMBL), Q5PPG3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERAPPDGLMNASGTLAGEAAAAGGARGFSAAWTAVLAALMALLIVATVLGNALVMLAFVADSS LRTQNNFFLLNLAISDFLVGAFCIPLYVPYVLTGRWTFGRGLCKLWLVVDYLLCASSVFNIVLI SYDRFLSVTRAVSYRAQQGDTRRAVRKMALVWVLAFLLYGPAILSWEYLSGGSSIPEGHCYAEF FYNWYFLITASTLEFFTPFLSVTFFNLSIYLNIQRRTRLRLDGGREAGPEPPPDAQPSPPPAPP SCWGCWPKGHGEAMPLHSSSRGTERPRSLKRGSKPSASSASLEKRMKMVSQSITQRFRLSRDKK VAKSLAIIVSIFGLCWAPYTLLMIIRAACHGRCIPDYWYETSFWLLWANSAVNPVLYPLCHYSF RRAFTKLLCPQKLKVQPHGSLEQCWK hide sequence

RefSeq Acc Id:	NP_001257494 ⟸ NM_001270565
- Peptide Label:	isoform H3C
- UniProtKB:	Q9QYN8 (UniProtKB/Swiss-Prot), Q5PPG3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERAPPDGLMNASGTLAGEAAAAGGARGFSAAWTAVLAALMALLIVATVLGNALVMLAFVADSS LRTQNNFFLLNLAISDFLVGAFCIPLYVPYVLTGRWTFGRGLCKLWLVVDYLLCASSVFNIVLI SYDRFLSVTRAVSYRAQQGDTRRAVRKMALVWVLAFLLYGPAILSWEYLSGGSSIPEGHCYAEF FYNWYFLITASTLEFFTPFLSVTFFNLSIYLNIQRRTRLRLDGGREAGPEPPPDAQPSPPPAPP SCWGCWPKGHGEAMPLHRGSKPSASSASLEKRMKMVSQSITQRFRLSRDKKVAKSLAIIVSIFG LCWAPYTLLMIIRAACHGRCIPDYWYETSFWLLWANSAVNPVLYPLCHYSFRRAFTKLLCPQKL KVQPHGSLEQCWK hide sequence

RefSeq Acc Id:	NP_001257499 ⟸ NM_001270570
- Peptide Label:	isoform 8
- UniProtKB:	Q5PPG3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERAPPDGLMNASGTLAGEAAAAGGARGFSAAWTAVLAALMALLIVATVLGNALVMLAFVADSS LRTQNNFFLLNLAISDFLVGAFCIPLYVPYVLTGRWTFGRGLCKLWLVVDYLLCASSVFNIVLI SYDRFLSVTRAVSYRAQQGDTRRAVRKMALVWVLAFLLYGPAILSWEYLSGGSSIPEGHCYAEF FYNWYFLITASTLEFFTPFLSVTFFNLSIYLNIQRRTRLRLDGGREAGPEPPPDAQPSPPPAPP SCWGCWPKGHGEAMPLHRGSKPSASSASLEKRMKMVSQSITQRFRLSRDKKVAKSLAIIVSIFG LCWAPYTLLMIIRAACHGRCIPDY hide sequence

RefSeq Acc Id:	NP_001257497 ⟸ NM_001270568
- Peptide Label:	isoform H3F
- UniProtKB:	A0A0G2JU84 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERAPPDGLMNASGTLAGEAAAAGGARGFSAAWTAVLAALMALLIVATVLGNALVMLAFVADSS LRTQNNFFLLNLAISDFLVGAFCIPLYVPYVLTGRWTFGRGLCKLWLVVDYLLCASSVFNIVLI SYDRFLSVTRAVSYRAQQGDTRRAVRKMALVWVLAFLLYGPAILSWEYLSGGSSIPEGHCYAEF FYNWYFLITASTLEFFTPFLSVTFFNLSIYLNIQRRTRLRLDGGREAGPEPPPDAQPSPPPAPP SCWGCWPKGHGEAMPLHRGSKPSASSASLEKRMKMVSQSITQRFRLSRDKKVAKSLAIIVSIFG LCWAPYTLLMIIRAACHGRCIPDYCVERLGKLEASLLLPLWMFSGRWRRRKHVCELDVPWMFNQ ERQNCRGARGWIGRCGLPRPPPSVLQLPAEPRQLLLPAPPPGLGRWPCPACPVCTIRIWGWVVM G hide sequence

RefSeq Acc Id:

XP_008760770 ⟸ XM_008762548

- Peptide Label:

isoform X1

- Sequence:

show sequence

MALVWVLAFLLYGPAILSWEYLSGGSSIPEGHCYAEFFYNWYFLITASTLEFFTPFLSVTFFNL
SIYLNIQRRTRLRLDGGREAGPEPPPDAQPSPPPAPPSCWGCWPKGHGEAMPLHRYGVGEAGPG
VEAGEAALGGGSGGGAAASPTSSSGSSSRGTERPRSLKRGSKPSASSASLEKRMKMVSQSITQR
FRLSRDKKVAKSLAIIVSIFGLCWAPYTLLMIIRAACHGRCIPDYCVERLGKLEASLLLPLWMF
SGRWRRRKHVCELDVPWMFNQERQNCRGARGWIGRCGLPRPPPSVLQLPAEPRQLLLPAPPPGL
GRWPCPACPVCTIRIWGWVVMG

hide sequence

RefSeq Acc Id:

ENSRNOP00000071828 ⟸ ENSRNOT00000077308

RefSeq Acc Id:

ENSRNOP00000069003 ⟸ ENSRNOT00000086761

RefSeq Acc Id:

ENSRNOP00000090011 ⟸ ENSRNOT00000116829

Protein Domains

G-protein coupled receptors family 1 profile

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9QYN8-F1-model_v2	AlphaFold	Q9QYN8	1-445	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692729

Promoter ID:

EPDNEW_R3254

Type:

single initiation site

Name:

Hrh3_1

Description:

histamine receptor H3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	175,479,378 - 175,479,438	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620630	AgrOrtholog
BioCyc Gene	G2FUF-46369	BioCyc
Ensembl Genes	ENSRNOG00000061153	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000077308	ENTREZGENE
	ENSRNOT00000077308.2	UniProtKB/TrEMBL
	ENSRNOT00000086761	ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOT00000116829	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7315203	IMAGE-MGC_LOAD
InterPro	7tmA_HRH3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCR_Rhodpsn	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Histamine_H3_rcpt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:85268	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:105370	IMAGE-MGC_LOAD
NCBI Gene	85268	ENTREZGENE
PANTHER	ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HISTAMINE RECEPTOR H3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	7tm_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Hrh3	PhenoGen
PRINTS	GPCRRHODOPSN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HISTAMINEH3R	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000061153	RatGTEx
SMART	7TM_GPCR_Srsx	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JU84	ENTREZGENE, UniProtKB/TrEMBL
	A6KMB7	ENTREZGENE, UniProtKB/TrEMBL
	A6KMB9_RAT	UniProtKB/TrEMBL
	A6KMC0_RAT	UniProtKB/TrEMBL
	HRH3_RAT	UniProtKB/Swiss-Prot
	Q2VJ17	ENTREZGENE, UniProtKB/TrEMBL
	Q2VJ18	ENTREZGENE, UniProtKB/TrEMBL
	Q541U0	ENTREZGENE, UniProtKB/TrEMBL
	Q5PPG3	ENTREZGENE, UniProtKB/TrEMBL
	Q9QYN6	ENTREZGENE
	Q9QYN7	ENTREZGENE
	Q9QYN8	ENTREZGENE
	Q9QYN9	ENTREZGENE
UniProt Secondary	Q9QYN6	UniProtKB/Swiss-Prot
	Q9QYN7	UniProtKB/Swiss-Prot
	Q9QYN9	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-12-14	Hrh3	histamine receptor H3			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Hrh3	histamine receptor H3			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_drugs	binds antagonists thioperamide and clobenpropit with high affinity, in contrast to low affinity binding of thioperamide to the human homolog	632981
gene_expression	expressed exclusively in brain	632981

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD