Nt5e (5' nucleotidase, ecto) - Rat Genome Database

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Gene: Nt5e (5' nucleotidase, ecto) Rattus norvegicus
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Symbol: Nt5e
Name: 5' nucleotidase, ecto
RGD ID: 61956
Description: Enables 5'-nucleotidase activity and ferrous iron binding activity. Involved in nucleobase-containing small molecule metabolic process; positive regulation of lipid biosynthetic process; and response to aluminum ion. Located in cell surface and synaptic membrane. Biomarker of status epilepticus. Human ortholog(s) of this gene implicated in hereditary arterial and articular multiple calcification syndrome. Orthologous to human NT5E (5'-nucleotidase ecto); PARTICIPATES IN hypoxia inducible factor pathway; monoterpenoid biosynthetic pathway; niacin metabolic pathway; INTERACTS WITH (+)-schisandrin B; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 5 nucleotidase; 5 nucleotidase ecto; 5' nucleotidase ecto; 5'-deoxynucleotidase; 5'-NT; 5'-nucleotidase; CD73; ecto-5'-nucleotidase; IMP-specific 5'-nucleotidase; MGC112615; Nt5; thymidylate 5'-phosphatase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8898,150,925 - 98,195,646 (+)NCBIGRCr8
mRatBN7.2889,271,046 - 89,314,918 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl889,270,696 - 89,314,881 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx894,940,630 - 94,984,431 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0893,139,844 - 93,183,642 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0890,998,970 - 91,042,930 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0895,969,002 - 96,012,733 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl895,968,652 - 96,012,696 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0895,464,591 - 95,508,322 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4893,591,630 - 93,635,481 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1893,610,734 - 93,654,911 (+)NCBI
Celera888,841,425 - 88,885,302 (+)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
Nt5eRatBrain Injuries  IEP 5134348protein:altered expression:cerebral cortex (rat)RGD 
Nt5eRatExperimental Diabetes Mellitus  IEP 5134343protein:increased expression:cerebral cortex and synaptosome (rat)RGD 
Nt5eRatstatus epilepticus  IEP 5134344protein:increased activity:cerebral cortex and synaptosome (rat)RGD 
Object Symbol
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Original Reference(s)
Nt5eRatgenetic disease  ISONT5E (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
Nt5eRathereditary arterial and articular multiple calcification syndrome  ISONT5E (Homo sapiens)8554872ClinVar more ...ClinVarPMID:21288095 more ...
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Original Reference(s)
Nt5eRatDisease Progression  ISONT5E (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:34773529
Nt5eRatExperimental Liver Cirrhosis  ISONT5E (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18263696
Nt5eRathereditary arterial and articular multiple calcification syndrome  ISONT5E (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Nt5eRatNeoplastic Cell Transformation  ISONT5E (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:34773529
Nt5eRatneuroblastoma  ISONT5E (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:34773529
Nt5eRatStomach Neoplasms  ISONT5E (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16367923
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Original Reference(s)
Nt5eRathereditary arterial and articular multiple calcification syndrome  ISONT5E (Homo sapiens)7240710 OMIM 

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Object Symbol
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Original Reference(s)
Nt5eRat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of NT5E mRNA]CTDPMID:31150632
Nt5eRat(-)-demecolcine increases expressionISONT5E (Homo sapiens)6480464Demecolcine results in increased expression of NT5E mRNACTDPMID:23649840
Nt5eRat(1->4)-beta-D-glucan multiple interactionsISONt5e (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of NT5E mRNACTDPMID:36331819
Nt5eRat1,2-dichloroethane increases expressionISONt5e (Mus musculus)6480464ethylene dichloride results in increased expression of NT5E mRNACTDPMID:28189721 and PMID:28960355
Nt5eRat1,2-dimethylhydrazine decreases expressionEXP 64804641 and 2-Dimethylhydrazine results in decreased expression of NT5E mRNACTDPMID:27840820
Nt5eRat1,2-dimethylhydrazine affects expressionISONt5e (Mus musculus)64804641 and 2-Dimethylhydrazine affects the expression of NT5E mRNACTDPMID:22206623
Nt5eRat1-nitropyrene increases expressionISONT5E (Homo sapiens)64804641-nitropyrene results in increased expression of NT5E mRNACTDPMID:19041380
Nt5eRat17alpha-ethynylestradiol affects expressionEXP 6480464Ethinyl Estradiol affects the expression of NT5E mRNACTDPMID:26865667
Nt5eRat17beta-estradiol multiple interactionsISONT5E (Homo sapiens)6480464[Estradiol co-treated with Bucladesine co-treated with Medroxyprogesterone Acetate] results in increased expression of NT5E mRNA more ...CTDPMID:20823114 more ...
Nt5eRat17beta-estradiol affects expressionISONt5e (Mus musculus)6480464Estradiol affects the expression of NT5E mRNACTDPMID:39298647
Nt5eRat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of NT5E mRNACTDPMID:32145629
Nt5eRat17beta-estradiol decreases expressionISONT5E (Homo sapiens)6480464Estradiol results in decreased expression of NT5E mRNACTDPMID:24758408 more ...
Nt5eRat2,2',4,4',5,5'-hexachlorobiphenyl increases expressionISONT5E (Homo sapiens)64804642 more ...CTDPMID:38568856
Nt5eRat2,2',4,4'-Tetrabromodiphenyl ether affects expressionISONt5e (Mus musculus)64804642 more ...CTDPMID:30294300
Nt5eRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISONt5e (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of NT5E mRNACTDPMID:21354282
Nt5eRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of NT5E mRNACTDPMID:34747641
Nt5eRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of NT5E mRNACTDPMID:32109520 and PMID:33387578
Nt5eRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISONt5e (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of NT5E mRNACTDPMID:26377647
Nt5eRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISONT5E (Homo sapiens)6480464Tetrachlorodibenzodioxin affects the expression of NT5E mRNACTDPMID:22298810 and PMID:22574217
Nt5eRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISONT5E (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of NT5E mRNACTDPMID:20106945 and PMID:21632981

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Biological Process
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Original Reference(s)
Nt5eRatadenosine biosynthetic process  IMP 152995394 RGD 
Nt5eRatadenosine biosynthetic process acts_upstream_of_or_withinISONt5e (Mus musculus)1624291MGI:3522017 PMID:16547283RGDPMID:16547283
Nt5eRatadenosine biosynthetic process acts_upstream_of_or_withinIEAUniProtKB:Q61503 and ensembl:ENSMUSP000000349921600115GO_REF:0000107EnsemblGO_REF:0000107
Nt5eRatadenosine metabolic process  IDA 2291861 RGD 
Nt5eRatADP catabolic process involved_inIEAUniProtKB:Q61503 and ensembl:ENSMUSP000000349921600115GO_REF:0000107EnsemblGO_REF:0000107
Nt5eRatADP catabolic process involved_inISONt5e (Mus musculus)1624291MGI:3522017 PMID:20430891 and PMID:28746349RGDPMID:20430891 and PMID:28746349
Nt5eRatAMP catabolic process  IDA 5134346 RGD 
Nt5eRatAMP catabolic process acts_upstream_of_or_withinIEAUniProtKB:Q61503 and ensembl:ENSMUSP000000349921600115GO_REF:0000107EnsemblGO_REF:0000107
Nt5eRatAMP catabolic process acts_upstream_of_or_withinISONt5e (Mus musculus)1624291MGI:3522017 PMID:16547283RGDPMID:16547283
Nt5eRatAMP catabolic process involved_inIBAMGI:99782 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Nt5eRatAMP catabolic process involved_inISONt5e (Mus musculus)1624291MGI:3522017 PMID:20430891 and PMID:28746349RGDPMID:20430891 and PMID:28746349
Nt5eRatAMP catabolic process  IMP 152995394 RGD 
Nt5eRatATP metabolic process involved_inIEAUniProtKB:P21589 and ensembl:ENSP000002577701600115GO_REF:0000107EnsemblGO_REF:0000107
Nt5eRatATP metabolic process involved_inISONT5E (Homo sapiens)1624291 PMID:25644539RGDPMID:25644539
Nt5eRatcalcium ion homeostasis involved_inISONt5e (Mus musculus)1624291MGI:1351634 PMID:28592560RGDPMID:28592560
Nt5eRatcalcium ion homeostasis involved_inIEAUniProtKB:Q61503 and ensembl:ENSMUSP000000349921600115GO_REF:0000107EnsemblGO_REF:0000107
Nt5eRatinhibition of non-skeletal tissue mineralization involved_inIEAUniProtKB:Q61503 and ensembl:ENSMUSP000000349921600115GO_REF:0000107EnsemblGO_REF:0000107
Nt5eRatinhibition of non-skeletal tissue mineralization involved_inISONt5e (Mus musculus)1624291 PMID:25644539RGDPMID:25644539
Nt5eRatleukocyte cell-cell adhesion involved_inIEAUniProtKB:P21589 and ensembl:ENSP000002577701600115GO_REF:0000107EnsemblGO_REF:0000107
Nt5eRatleukocyte cell-cell adhesion involved_inISONT5E (Homo sapiens)1624291 PMID:7595232RGDPMID:7595232
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Cellular Component
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Original Reference(s)
Nt5eRatcell surface  IDA 5134342 RGD 
Nt5eRatcytosol located_inISONT5E (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Nt5eRatcytosol located_inIEAUniProtKB:P21589 and ensembl:ENSP000002577701600115GO_REF:0000107EnsemblGO_REF:0000107
Nt5eRatexternal side of plasma membrane is_active_inISONt5e (Mus musculus)1624291MGI:3522017 PMID:28746349RGDPMID:28746349
Nt5eRatexternal side of plasma membrane is_active_inIEAUniProtKB:Q61503 and ensembl:ENSMUSP000000349921600115GO_REF:0000107EnsemblGO_REF:0000107
Nt5eRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Nt5eRatmembrane located_inIEAUniProtKB:P21589 and ensembl:ENSP000002577701600115GO_REF:0000107EnsemblGO_REF:0000107
Nt5eRatmembrane located_inIEAUniProtKB:Q61503 and ensembl:ENSMUSP000000349921600115GO_REF:0000107EnsemblGO_REF:0000107
Nt5eRatmembrane located_inISONt5e (Mus musculus)1624291 PMID:16547283RGDPMID:16547283
Nt5eRatmembrane located_inISONT5E (Homo sapiens)1624291 PMID:2129526RGDPMID:2129526
Nt5eRatnucleoplasm located_inIEAUniProtKB:P21589 and ensembl:ENSP000002577701600115GO_REF:0000107EnsemblGO_REF:0000107
Nt5eRatnucleoplasm located_inISONT5E (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Nt5eRatplasma membrane located_inISONT5E (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Nt5eRatplasma membrane is_active_inIEAUniProtKB:P21589 and ensembl:ENSP000002577701600115GO_REF:0000107EnsemblGO_REF:0000107
Nt5eRatplasma membrane located_inIEAUniProtKB:Q61503 and ensembl:ENSMUSP000000349921600115GO_REF:0000107EnsemblGO_REF:0000107
Nt5eRatplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Nt5eRatplasma membrane located_inISONt5e (Mus musculus)1624291 PMID:11375348RGDPMID:11375348
Nt5eRatplasma membrane is_active_inIBAMGI:99782 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Nt5eRatplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Nt5eRatplasma membrane is_active_inISONT5E (Homo sapiens)1624291 PMID:25644539RGDPMID:25644539
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Molecular Function
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Original Reference(s)
Nt5eRat5'-deoxynucleotidase activity enablesIEAUniProtKB:P21589 and ensembl:ENSP000002577701600115GO_REF:0000107EnsemblGO_REF:0000107
Nt5eRat5'-deoxynucleotidase activity enablesIEARHEA:361671600115GO_REF:0000116RHEAGO_REF:0000116
Nt5eRat5'-deoxynucleotidase activity enablesISONT5E (Homo sapiens)1624291 PMID:22997138 and PMID:34403084RGDPMID:22997138 and PMID:34403084
Nt5eRat5'-nucleotidase activity  IDA 631915 RGD 
Nt5eRat5'-nucleotidase activity enablesIEAUniProtKB:Q61503 and ensembl:ENSMUSP000000349921600115GO_REF:0000107EnsemblGO_REF:0000107
Nt5eRat5'-nucleotidase activity enablesIEAUniProtKB:P21589 and ensembl:ENSP000002577701600115GO_REF:0000107EnsemblGO_REF:0000107
Nt5eRat5'-nucleotidase activity enablesISONt5e (Mus musculus)1624291MGI:3522017 PMID:16547283 more ...RGDPMID:16547283 more ...
Nt5eRat5'-nucleotidase activity enablesIBAFB:FBgn0034225 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Nt5eRat5'-nucleotidase activity enablesIEAEC:3.1.3.51600115GO_REF:0000003UniProtGO_REF:0000003
Nt5eRat5'-nucleotidase activity enablesIEARHEA:124841600115GO_REF:0000116RHEAGO_REF:0000116
Nt5eRat5'-nucleotidase activity enablesIDA 155230694PMID:1770988UniProt 
Nt5eRat5'-nucleotidase activity enablesISONT5E (Homo sapiens)1624291 PMID:22997138 more ...RGDPMID:22997138 more ...
Nt5eRat5'-nucleotidase activity enablesIDA 10047240PMID:6017738CACAO 
Nt5eRat5'-nucleotidase activity  IDA 2291861 RGD 
Nt5eRatferrous iron binding  IDA 631915 RGD 
Nt5eRathydrolase activity enablesIEAUniProtKB-KW:KW-03781600115GO_REF:0000043UniProtGO_REF:0000043
Nt5eRathydrolase activity enablesIEAInterPro:IPR004843 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Nt5eRathydrolase activity, acting on ester bonds enablesIEAInterPro:IPR0061461600115GO_REF:0000002InterProGO_REF:0000002
Nt5eRatidentical protein binding enablesIEAUniProtKB:P21589 and ensembl:ENSP000002577701600115GO_REF:0000107EnsemblGO_REF:0000107
Nt5eRatidentical protein binding enablesISONT5E (Homo sapiens)1624291 PMID:22997138 more ...RGDPMID:22997138 more ...
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Imported Annotations - KEGG (archival)

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Original Reference(s)
Nt5eRatmonoterpenoid biosynthetic pathway  IEA 6907045 KEGGrno:00760
Nt5eRatniacin metabolic pathway  IEA 6907045 KEGGrno:00760
Nt5eRatpurine metabolic pathway  IEA 6907045 KEGGrno:00230
Nt5eRatpyrimidine metabolic pathway  IEA 6907045 KEGGrno:00240

Imported Annotations - PID (archival)

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Original Reference(s)
Nt5eRathypoxia inducible factor pathway   ISONT5E (Homo sapiens)6484113 PIDPID:200202

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#
Reference Title
Reference Citation
1. Evidence for the involvement of cytosolic 5'-nucleotidase (cN-II) in the synthesis of guanine nucleotides from xanthosine. Barsotti C, etal., J Biol Chem. 2005 Apr 8;280(14):13465-9. Epub 2005 Feb 6.
2. The ecto-enzymes CD73 and adenosine deaminase modulate 5'-AMP-derived adenosine in myofibroblasts of the rat small intestine. Bin A, etal., Purinergic Signal. 2018 Dec;14(4):409-421. doi: 10.1007/s11302-018-9623-6. Epub 2018 Sep 29.
3. Dynamic changes in the expression pattern of ecto-5'-nucleotidase in the rat model of cortical stab injury. Bjelobaba I, etal., J Neurosci Res. 2011 Jun;89(6):862-73. doi: 10.1002/jnr.22599. Epub 2011 Feb 17.
4. Ontogenetic profile of ectonucleotidase activities from brain synaptosomes of pilocarpine-treated rats. de Paula Cognato G, etal., Int J Dev Neurosci. 2005 Dec;23(8):703-9. Epub 2005 Nov 4.
5. 5'-Nucleotidase activity increases in aging rat brain. Fuchs JL, Neurobiol Aging. 1991 Sep-Oct;12(5):523-30. doi: 10.1016/0197-4580(91)90083-v.
6. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
8. The effect of aluminium on NTPDase and 5'-nucleotidase activities from rat synaptosomes and platelets. Kaizer RR, etal., Int J Dev Neurosci. 2007 Oct;25(6):381-6. Epub 2007 Jul 10.
9. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
10. Oxidative modification of rat liver 5'-nucleotidase: the mechanisms for protection and re-activation. Kocic G, etal., Arch Physiol Biochem 2001 Oct;109(4):323-30.
11. Enzymes of adenosine metabolism in the brain: diurnal rhythm and the effect of sleep deprivation. Mackiewicz M, etal., J Neurochem. 2003 Apr;85(2):348-57.
12. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
13. Primary structure of rat liver 5'-nucleotidase deduced from the cDNA. Presence of the COOH-terminal hydrophobic domain for possible post-translational modification by glycophospholipid. Misumi Y, etal., J Biol Chem 1990 Feb 5;265(4):2178-83.
14. Upregulation of Lipid Synthesis in Small Rat Adipocytes by Microvesicle-Associated CD73 From Large Adipocytes. Muller G, etal., Obesity (Silver Spring). 2011 Mar 3.
15. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
16. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
17. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
18. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
19. GOA pipeline RGD automated data pipeline
20. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
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PMID:2129526   PMID:2148114   PMID:7595232   PMID:11375348   PMID:12477932   PMID:15149841   PMID:15202768   PMID:15307889   PMID:15543949   PMID:15763893   PMID:16480902   PMID:16547283  
PMID:16672190   PMID:16705150   PMID:16718378   PMID:17119848   PMID:17574764   PMID:17619122   PMID:17619139   PMID:18201730   PMID:18223197   PMID:18256932   PMID:18636315   PMID:19056867  
PMID:19169047   PMID:19463911   PMID:19524108   PMID:19581412   PMID:19893081   PMID:20359849   PMID:20458337   PMID:21362503   PMID:22045065   PMID:22899823   PMID:23300031   PMID:23533145  
PMID:24894822   PMID:25833166   PMID:25907806   PMID:26080748   PMID:26303492   PMID:26499073   PMID:26987957   PMID:27102210   PMID:27694000   PMID:28363952   PMID:28560821   PMID:28684854  
PMID:30117104   PMID:30507864   PMID:30913879   PMID:31220343   PMID:35352799   PMID:37646205   PMID:38545102  



Nt5e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8898,150,925 - 98,195,646 (+)NCBIGRCr8
mRatBN7.2889,271,046 - 89,314,918 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl889,270,696 - 89,314,881 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx894,940,630 - 94,984,431 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0893,139,844 - 93,183,642 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0890,998,970 - 91,042,930 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0895,969,002 - 96,012,733 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl895,968,652 - 96,012,696 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0895,464,591 - 95,508,322 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4893,591,630 - 93,635,481 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1893,610,734 - 93,654,911 (+)NCBI
Celera888,841,425 - 88,885,302 (+)NCBICelera
Cytogenetic Map8q31NCBI
NT5E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38685,450,083 - 85,495,784 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl685,449,584 - 85,495,791 (+)EnsemblGRCh38hg38GRCh38
GRCh37686,159,801 - 86,205,502 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36686,216,528 - 86,262,215 (+)NCBINCBI36Build 36hg18NCBI36
Build 34686,216,527 - 86,262,215NCBI
Celera686,586,482 - 86,632,679 (+)NCBICelera
Cytogenetic Map6q14.3NCBI
HuRef683,383,590 - 83,429,793 (+)NCBIHuRef
CHM1_1686,257,244 - 86,303,451 (+)NCBICHM1_1
T2T-CHM13v2.0686,666,882 - 86,712,587 (+)NCBIT2T-CHM13v2.0
Nt5e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39988,209,662 - 88,254,142 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl988,209,250 - 88,254,145 (+)EnsemblGRCm39 Ensembl
GRCm38988,327,609 - 88,372,089 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl988,327,197 - 88,372,092 (+)EnsemblGRCm38mm10GRCm38
MGSCv37988,222,447 - 88,266,927 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36988,125,533 - 88,169,982 (+)NCBIMGSCv36mm8
Celera985,354,734 - 85,399,137 (+)NCBICelera
Cytogenetic Map9E3.1NCBI
cM Map947.24NCBI
Nt5e
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541112,891,236 - 12,948,406 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541112,891,236 - 12,946,324 (+)NCBIChiLan1.0ChiLan1.0
NT5E
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25105,532,410 - 105,584,140 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16103,429,147 - 103,478,675 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0683,333,428 - 83,379,585 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1686,615,409 - 86,661,594 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl686,615,409 - 86,661,601 (+)Ensemblpanpan1.1panPan2
NT5E
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11245,491,028 - 45,520,019 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1245,491,733 - 45,518,405 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1245,289,507 - 45,334,783 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01246,244,000 - 46,289,219 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1246,243,992 - 46,289,217 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11245,577,415 - 45,622,655 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01245,506,318 - 45,551,536 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01245,693,314 - 45,738,560 (+)NCBIUU_Cfam_GSD_1.0
Nt5e
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494680,624,771 - 80,673,677 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365105,797,212 - 5,846,124 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365105,797,218 - 5,846,118 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NT5E
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl154,400,810 - 54,448,742 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1154,400,786 - 54,450,743 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2160,831,831 - 60,881,527 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NT5E
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11310,115,591 - 10,162,178 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1310,116,161 - 10,160,414 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040186,303,608 - 186,348,855 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nt5e
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247998,765,711 - 8,845,778 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247998,766,608 - 8,845,296 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Nt5e
252 total Variants

Predicted Target Of
Summary Value
Count of predictions:318
Count of miRNA genes:216
Interacting mature miRNAs:252
Transcripts:ENSRNOT00000015057
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 44 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat

1 to 10 of 44 rows
RH133920  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2889,314,499 - 89,314,714 (+)MAPPERmRatBN7.2
Rnor_6.0896,012,315 - 96,012,529NCBIRnor6.0
Rnor_5.0895,507,904 - 95,508,118UniSTSRnor5.0
RGSC_v3.4893,635,063 - 93,635,277UniSTSRGSC3.4
Celera888,884,884 - 88,885,098UniSTS
RH 3.4 Map81012.2UniSTS
Cytogenetic Map8q31UniSTS
RH144635  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2889,276,206 - 89,276,376 (+)MAPPERmRatBN7.2
Rnor_6.0895,974,163 - 95,974,332NCBIRnor6.0
Rnor_5.0895,469,752 - 95,469,921UniSTSRnor5.0
RGSC_v3.4893,596,791 - 93,596,960UniSTSRGSC3.4
Celera888,846,586 - 88,846,755UniSTS
RH 3.4 Map81020.8UniSTS
Cytogenetic Map8q31UniSTS
BF410734  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2889,272,455 - 89,272,557 (+)MAPPERmRatBN7.2
Rnor_6.0895,970,412 - 95,970,513NCBIRnor6.0
Rnor_5.0895,466,001 - 95,466,102UniSTSRnor5.0
RGSC_v3.4893,593,040 - 93,593,141UniSTSRGSC3.4
Celera888,842,835 - 88,842,936UniSTS
RH 3.4 Map81014.7UniSTS
Cytogenetic Map8q31UniSTS
BF399571  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2889,308,091 - 89,308,252 (+)MAPPERmRatBN7.2
Rnor_6.0896,005,859 - 96,006,019NCBIRnor6.0
Rnor_5.0895,501,448 - 95,501,608UniSTSRnor5.0
RGSC_v3.4893,628,656 - 93,628,816UniSTSRGSC3.4
Celera888,878,476 - 88,878,636UniSTS
RH 3.4 Map81014.0UniSTS
Cytogenetic Map8q31UniSTS
Nt5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2889,312,610 - 89,312,737 (+)MAPPERmRatBN7.2
Rnor_6.0896,010,426 - 96,010,552NCBIRnor6.0
Rnor_5.0895,506,015 - 95,506,141UniSTSRnor5.0
RGSC_v3.4893,633,174 - 93,633,300UniSTSRGSC3.4
Celera888,882,995 - 88,883,121UniSTS
Cytogenetic Map8q31UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000015057   ⟹   ENSRNOP00000015057
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl889,270,696 - 89,314,881 (+)Ensembl
Rnor_6.0 Ensembl895,968,652 - 96,012,696 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107471   ⟹   ENSRNOP00000091985
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl889,270,696 - 89,314,881 (+)Ensembl
RefSeq Acc Id: NM_021576   ⟹   NP_067587
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8898,150,925 - 98,194,794 (+)NCBI
mRatBN7.2889,271,046 - 89,314,918 (+)NCBI
Rnor_6.0895,969,002 - 96,012,733 (+)NCBI
Rnor_5.0895,464,591 - 95,508,322 (+)NCBI
RGSC_v3.4893,591,630 - 93,635,481 (+)RGD
Celera888,841,425 - 88,885,302 (+)RGD
Sequence:
RefSeq Acc Id: XM_063266046   ⟹   XP_063122116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8898,151,643 - 98,195,646 (+)NCBI
1 to 9 of 9 rows
Protein RefSeqs NP_067587 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122116 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA40621 (Get FASTA)   NCBI Sequence Viewer  
  AAH81806 (Get FASTA)   NCBI Sequence Viewer  
  AAH98665 (Get FASTA)   NCBI Sequence Viewer  
  EDL77598 (Get FASTA)   NCBI Sequence Viewer  
  EDL77599 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000015057
GenBank Protein P21588 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
RefSeq Acc Id: NP_067587   ⟸   NM_021576
- Peptide Label: precursor
- UniProtKB: P21588 (UniProtKB/Swiss-Prot),   Q66HL0 (UniProtKB/TrEMBL),   Q4G083 (UniProtKB/TrEMBL),   F7EWJ6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000015057   ⟸   ENSRNOT00000015057
Ensembl Acc Id: ENSRNOP00000091985   ⟸   ENSRNOT00000107471
RefSeq Acc Id: XP_063122116   ⟸   XM_063266046
- Peptide Label: isoform X1
- UniProtKB: P21588 (UniProtKB/Swiss-Prot)
Name Modeler Protein Id AA Range Protein Structure
AF-P21588-F1-model_v2 AlphaFold P21588 1-576 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13696167
Promoter ID:EPDNEW_R6692
Type:single initiation site
Name:Nt5e_2
Description:5' nucleotidase, ecto
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R6693  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0895,968,630 - 95,968,690EPDNEW
RGD ID:13696168
Promoter ID:EPDNEW_R6693
Type:initiation region
Name:Nt5e_1
Description:5' nucleotidase, ecto
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R6692  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0895,968,994 - 95,969,054EPDNEW


1 to 36 of 36 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-29612 BioCyc
Ensembl Genes ENSRNOG00000011071 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000015057 ENTREZGENE
Gene3D-CATH 3.60.21.10 UniProtKB/Swiss-Prot
  3.90.780.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7134340 IMAGE-MGC_LOAD
  IMAGE:7322840 IMAGE-MGC_LOAD
InterPro 5'-Nucleotdase_C UniProtKB/Swiss-Prot
  5'-Nucleotdase_C_sf UniProtKB/Swiss-Prot
  5'-Nucleotdase_CS UniProtKB/Swiss-Prot
  5_nucleotidase/apyrase UniProtKB/Swiss-Prot
  Calcineurin-like_PHP_ApaH UniProtKB/Swiss-Prot
  Metallo-depent_PP-like UniProtKB/Swiss-Prot
MGC_CLONE MGC:112615 IMAGE-MGC_LOAD
  MGC:93467 IMAGE-MGC_LOAD
NCBI Gene 58813 ENTREZGENE
PANTHER 5'-NUCLEOTIDASE UniProtKB/Swiss-Prot
  PTHR11575 UniProtKB/Swiss-Prot
Pfam 5_nucleotid_C UniProtKB/Swiss-Prot
  Metallophos UniProtKB/Swiss-Prot
PharmGKB NT5E RGD
PhenoGen Nt5e PhenoGen
PRINTS APYRASEFAMLY UniProtKB/Swiss-Prot
PROSITE 5_NUCLEOTIDASE_1 UniProtKB/Swiss-Prot
  5_NUCLEOTIDASE_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000011071 RatGTEx
Superfamily-SCOP SSF55816 UniProtKB/Swiss-Prot
  SSF56300 UniProtKB/Swiss-Prot
TIGR TC228515
UniProt 5NTD_RAT UniProtKB/Swiss-Prot
  A0A8I6AV15_RAT UniProtKB/TrEMBL
  A6I1X9_RAT UniProtKB/TrEMBL
  F7EWJ6 ENTREZGENE, UniProtKB/TrEMBL
  P21588 ENTREZGENE
  Q4G083 ENTREZGENE
  Q66HL0 ENTREZGENE, UniProtKB/TrEMBL
1 to 36 of 36 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Nt5e  5' nucleotidase, ecto  Nt5  5 nucleotidase  Name updated 1299863 APPROVED
2002-06-10 Nt5  5 nucleotidase      Name updated 70584 APPROVED

Note Type Note Reference
gene_cellular_localization localized to the plasma membrane  
gene_protein 63.965 kDa