Ccnd3 (cyclin D3) - Rat Genome Database

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Gene: Ccnd3 (cyclin D3) Rattus norvegicus
Analyze
Symbol: Ccnd3
Name: cyclin D3
RGD ID: 2293
Description: Enables protein kinase binding activity. Involved in several processes, including G1/S transition of mitotic cell cycle; hyaluronan biosynthetic process; and response to glucose. Predicted to be located in nucleoplasm. Predicted to be part of cyclin D3-CDK4 complex and cyclin D3-CDK6 complex. Predicted to be active in cytoplasm; microtubule organizing center; and nucleus. Orthologous to human CCND3 (cyclin D3); PARTICIPATES IN G1/S transition pathway; cell cycle pathway, mitotic; Jak-Stat signaling pathway; INTERACTS WITH 17beta-estradiol; 2-methoxyethanol; 3,3',5,5'-tetrabromobisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: G1/S-specific cyclin-D3; MGC108760; MGC93643
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8920,891,696 - 20,987,199 (-)NCBIGRCr8
mRatBN7.2913,394,161 - 13,400,341 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl913,394,169 - 13,489,371 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx921,973,914 - 21,980,097 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0927,038,080 - 27,044,259 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0925,337,315 - 25,343,498 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0915,404,816 - 15,410,905 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl915,404,822 - 15,410,943 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0914,326,227 - 14,332,267 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera911,145,441 - 11,151,481 (-)NCBICelera
Cytogenetic Map9q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
Ccnd3RatBreast Neoplasms  ISOCCND3 (Homo sapiens)2316005DNA:polymorphism:promoter:-677C>T (human)RGD 
Ccnd3Ratcervix carcinoma  ISOCCND3 (Homo sapiens)2316013 RGD 
Ccnd3RatExperimental Diabetes Mellitus  IEP 2316018protein:increased expression:kidney and glomerulusRGD 
Ccnd3RatExperimental Mammary Neoplasms  IEP 2316020mRNA and protein:increased expression:mammary glandRGD 
Ccnd3RatExperimental Mammary Neoplasms  ISOCcnd3 (Mus musculus)2316015 RGD 
Ccnd3Ratinvasive ductal carcinoma severityISOCCND3 (Homo sapiens)2316016protein:increased expression:breastRGD 
Ccnd3Ratmultiple myeloma  ISOCCND3 (Homo sapiens)1581171 RGD 
Ccnd3Ratovary adenocarcinoma disease_progressionISOCCND3 (Homo sapiens)2316011 RGD 
Ccnd3Ratprostate cancer disease_progressionISOCCND3 (Homo sapiens)2316009 RGD 
Ccnd3Ratrenal cell carcinoma disease_progressionISOCCND3 (Homo sapiens)2316007 RGD 
Ccnd3RatSpinal Cord Injuries  IEP 2316019protein:increased expression:spinal cordRGD 
Ccnd3Raturinary bladder cancer disease_progressionISOCCND3 (Homo sapiens)2316012 RGD 
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Original Reference(s)
Ccnd3Ratinfantile Refsum disease  ISOCCND3 (Homo sapiens)8554872ClinVar Annotator: match by term: ADRENOLEUKODYSTROPHY and AUTOSOMAL NEONATALClinVarPMID:19877282 more ...
Ccnd3RatZellweger syndrome  ISOCCND3 (Homo sapiens)8554872ClinVar Annotator: match by term: Peroxisome biogenesis disorders and Zellweger syndrome spectrumClinVarPMID:19877282 more ...
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Ccnd3RatT-cell acute lymphoblastic leukemia  ISOCCND3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28671688

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Original Reference(s)
Ccnd3Rat(aminomethyl)phosphonic acid multiple interactionsISOCCND3 (Homo sapiens)6480464[1-aminomethylphosphonic acid co-treated with methoxyacetic acid] results in decreased expression of CCND3 proteinCTDPMID:26006246
Ccnd3Rat(aminomethyl)phosphonic acid decreases expressionISOCCND3 (Homo sapiens)64804641-aminomethylphosphonic acid results in decreased expression of CCND3 proteinCTDPMID:23983455
Ccnd3Rat(S)-amphetamine increases expressionISOCcnd3 (Mus musculus)6480464Dextroamphetamine results in increased expression of CCND3 mRNACTDPMID:12558987
Ccnd3Rat1,2-dimethylhydrazine multiple interactionsISOCcnd3 (Mus musculus)6480464Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of CCND3 mRNA]CTDPMID:22206623
Ccnd3Rat1,2-dimethylhydrazine increases expressionISOCcnd3 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of CCND3 mRNACTDPMID:22206623
Ccnd3Rat14-Deoxy-11,12-didehydroandrographolide decreases expressionISOCCND3 (Homo sapiens)648046414-deoxy-11 and 12-didehydroandrographolide results in decreased expression of CCND3 mRNACTDPMID:22101062
Ccnd3Rat15-deoxy-Delta(12,14)-prostaglandin J2 decreases expressionISOCCND3 (Homo sapiens)648046415-deoxy-delta(12 and 14)-prostaglandin J2 results in decreased expression of CCND3 proteinCTDPMID:15729575
Ccnd3Rat17alpha-ethynylestradiol affects expressionISOCcnd3 (Mus musculus)6480464Ethinyl Estradiol affects the expression of CCND3 mRNACTDPMID:17555576
Ccnd3Rat17alpha-ethynylestradiol multiple interactionsISOCcnd3 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of CCND3 mRNACTDPMID:17942748
Ccnd3Rat17alpha-ethynylestradiol increases expressionISOCcnd3 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of CCND3 mRNACTDPMID:17942748
Ccnd3Rat17beta-estradiol multiple interactionsISOCcnd3 (Mus musculus)6480464Cycloheximide affects the reaction [Estradiol affects the expression of CCND3 mRNA] more ...CTDPMID:9094091
Ccnd3Rat17beta-estradiol multiple interactionsISOCCND3 (Homo sapiens)6480464IGF1R mutant form promotes the reaction [Estradiol results in increased expression of CCND3 mRNA]CTDPMID:23094148
Ccnd3Rat17beta-estradiol increases expressionISOCCND3 (Homo sapiens)6480464Estradiol results in increased expression of CCND3 mRNACTDPMID:15897899 more ...
Ccnd3Rat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of CCND3 mRNACTDPMID:24236210
Ccnd3Rat17beta-estradiol affects expressionISOCCND3 (Homo sapiens)6480464Estradiol affects the expression of CCND3 mRNACTDPMID:21826169 and PMID:22574217
Ccnd3Rat17beta-estradiol increases expressionISOCcnd3 (Mus musculus)6480464Estradiol results in increased expression of CCND3 mRNACTDPMID:11861973
Ccnd3Rat17beta-estradiol affects expressionISOCcnd3 (Mus musculus)6480464Estradiol affects the expression of CCND3 mRNACTDPMID:9094091
Ccnd3Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOCcnd3 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of CCND3 mRNACTDPMID:17942748
Ccnd3Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOCcnd3 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of CCND3 mRNACTDPMID:18343893 more ...
Ccnd3Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOCcnd3 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of CCND3 mRNACTDPMID:21041162

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Biological Process
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Original Reference(s)
Ccnd3Ratcell division involved_inIEAUniProtKB-KW:KW-01321600115GO_REF:0000043UniProtGO_REF:0000043
Ccnd3RatG1/S transition of mitotic cell cycle  IEP 724624 RGD 
Ccnd3RatG1/S transition of mitotic cell cycle involved_inIBACGD:CAL0000185532 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ccnd3RatG1/S transition of mitotic cell cycle involved_inISOCCND3 (Homo sapiens)1624291 PMID:8114739RGDPMID:8114739
Ccnd3RatG1/S transition of mitotic cell cycle involved_inIEAUniProtKB:P30281 and ensembl:ENSP000003620821600115GO_REF:0000107EnsemblGO_REF:0000107
Ccnd3Rathyaluronan biosynthetic process  IMP 2316018 RGD 
Ccnd3Ratnegative regulation of transcription by RNA polymerase II acts_upstream_of_or_withinISOCcnd3 (Mus musculus)1624291 PMID:23109711RGDPMID:23109711
Ccnd3Ratnegative regulation of transcription by RNA polymerase II acts_upstream_of_or_withinIEAUniProtKB:P30282 and ensembl:ENSMUSP000001261411600115GO_REF:0000107EnsemblGO_REF:0000107
Ccnd3Ratpositive regulation of cell population proliferation  IMP 1582343 RGD 
Ccnd3Ratpositive regulation of G1/S transition of mitotic cell cycle involved_inIBAPANTHER:PTN000808639 and UniProtKB:P302791600115GO_REF:0000033GO_CentralGO_REF:0000033
Ccnd3Ratregulation of cell cycle acts_upstream_of_or_withinIEAUniProtKB:P30282 and ensembl:ENSMUSP000001261411600115GO_REF:0000107EnsemblGO_REF:0000107
Ccnd3Ratregulation of cell cycle acts_upstream_of_or_withinISOCcnd3 (Mus musculus)1624291 PMID:11809706RGDPMID:11809706
Ccnd3Ratregulation of cell population proliferation acts_upstream_of_or_withinISOCcnd3 (Mus musculus)1624291 PMID:23109711RGDPMID:23109711
Ccnd3Ratregulation of cell population proliferation acts_upstream_of_or_withinIEAUniProtKB:P30282 and ensembl:ENSMUSP000001261411600115GO_REF:0000107EnsemblGO_REF:0000107
Ccnd3Ratresponse to glucose  IEP 2316018 RGD 
Ccnd3Ratresponse to peptide hormone  IMP 1582343 RGD 
Ccnd3Ratsignal transduction acts_upstream_of_or_withinISOCcnd3 (Mus musculus)1624291 PMID:12130539RGDPMID:12130539
Ccnd3Ratsignal transduction acts_upstream_of_or_withinIEAUniProtKB:P30282 and ensembl:ENSMUSP000001261411600115GO_REF:0000107EnsemblGO_REF:0000107
Ccnd3RatT cell proliferation acts_upstream_of_or_withinISOCcnd3 (Mus musculus)1624291MGI:2448172 PMID:14706337RGDPMID:14706337
Ccnd3RatT cell proliferation acts_upstream_of_or_withinIEAUniProtKB:P30282 and ensembl:ENSMUSP000001261411600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
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Original Reference(s)
Ccnd3Ratcyclin D3-CDK4 complex part_ofISOCCND3 (Homo sapiens)1624291 PMID:19237555RGDPMID:19237555
Ccnd3Ratcyclin D3-CDK4 complex part_ofIEAUniProtKB:P30281 and ensembl:ENSP000003620821600115GO_REF:0000107EnsemblGO_REF:0000107
Ccnd3Ratcyclin D3-CDK6 complex part_ofISOCCND3 (Homo sapiens)1624291 PMID:8114739RGDPMID:8114739
Ccnd3Ratcyclin D3-CDK6 complex part_ofIEAUniProtKB:P30281 and ensembl:ENSP000003620821600115GO_REF:0000107EnsemblGO_REF:0000107
Ccnd3Ratcyclin-dependent protein kinase holoenzyme complex part_ofISOCCND3 (Homo sapiens)1624291 PMID:8114739RGDPMID:8114739
Ccnd3Ratcyclin-dependent protein kinase holoenzyme complex part_ofIEAUniProtKB:P30281 and ensembl:ENSP000003620821600115GO_REF:0000107EnsemblGO_REF:0000107
Ccnd3Ratcyclin-dependent protein kinase holoenzyme complex part_ofIBAMGI:108042 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ccnd3Ratcytoplasm is_active_inIBAFB:FBgn0000404 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ccnd3Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Ccnd3Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Ccnd3Ratmicrotubule organizing center is_active_inIBAPANTHER:PTN007424001 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ccnd3Ratnucleoplasm located_inIEAUniProtKB:P30281 and ensembl:ENSP000003620821600115GO_REF:0000107EnsemblGO_REF:0000107
Ccnd3Ratnucleoplasm located_inISOCCND3 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Ccnd3Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Ccnd3Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Ccnd3Ratnucleus is_active_inIBAFB:FBgn0000404 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ccnd3Ratnucleus located_inIEAUniProtKB:P30282 and ensembl:ENSMUSP000001261411600115GO_REF:0000107EnsemblGO_REF:0000107
Ccnd3Ratnucleus located_inISOCcnd3 (Mus musculus)1624291 PMID:21539824 and PMID:23109711RGDPMID:21539824 and PMID:23109711
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Molecular Function
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Original Reference(s)
Ccnd3Ratcyclin-dependent protein serine/threonine kinase activator activity enablesIEAUniProtKB:P30281 and ensembl:ENSP000003620821600115GO_REF:0000107EnsemblGO_REF:0000107
Ccnd3Ratcyclin-dependent protein serine/threonine kinase activator activity enablesISOCCND3 (Homo sapiens)1624291 PMID:8114739RGDPMID:8114739
Ccnd3Ratcyclin-dependent protein serine/threonine kinase activity enablesIEAUniProtKB:P30282 and ensembl:ENSMUSP000001261411600115GO_REF:0000107EnsemblGO_REF:0000107
Ccnd3Ratcyclin-dependent protein serine/threonine kinase activity enablesISOCcnd3 (Mus musculus)1624291 PMID:12130539RGDPMID:12130539
Ccnd3Ratcyclin-dependent protein serine/threonine kinase regulator activity enablesIBACGD:CAL0000175354 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ccnd3Ratprotein binding enablesISOCcnd3 (Mus musculus)1624291PR:P46414 more ...RGDPMID:12130539 more ...
Ccnd3Ratprotein binding enablesISOCCND3 (Homo sapiens)1624291UniProtKB:O14964 more ...RGDPMID:11896535 more ...
Ccnd3Ratprotein kinase binding  IPICdk4 (Rattus norvegicus)1582338 RGD 
Ccnd3Ratprotein kinase binding enablesISOCcnd3 (Mus musculus)1624291PR:P30285 PMID:23109711RGDPMID:23109711
Ccnd3Ratprotein kinase binding enablesIEAUniProtKB:P30281 and ensembl:ENSP000003620821600115GO_REF:0000107EnsemblGO_REF:0000107
Ccnd3Ratprotein kinase binding enablesIEAUniProtKB:P30282 and ensembl:ENSMUSP000001261411600115GO_REF:0000107EnsemblGO_REF:0000107
Ccnd3Ratprotein kinase binding enablesIEAARBA:ARBA000285981600115GO_REF:0000117UniProtGO_REF:0000117
Ccnd3Ratprotein kinase binding enablesISOCCND3 (Homo sapiens)1624291UniProtKB:Q00534 and PMID:8114739RGDPMID:8114739
Ccnd3Ratprotein kinase binding  IPICdk6 (Rattus norvegicus)1582338 RGD 
Ccnd3Ratprotein serine/threonine kinase activator activity enablesISOCCND3 (Homo sapiens)1624291 PMID:8114739RGDPMID:8114739
Ccnd3Ratprotein serine/threonine kinase activator activity enablesIEAUniProtKB:P30281 and ensembl:ENSP000003620821600115GO_REF:0000107EnsemblGO_REF:0000107
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RGD Manual Annotations


  
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Original Reference(s)
Ccnd3RatG1/S transition pathway  ISOCCND3 (Homo sapiens)8694143 RGD 

Imported Annotations - KEGG (archival)

Object Symbol
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Original Reference(s)
Ccnd3Ratcell cycle pathway, mitotic  IEA 6907045 KEGGrno:04110
Ccnd3RatJak-Stat signaling pathway   IEA 6907045 KEGGrno:04630
Ccnd3Ratmeasles pathway  IEA 6907045 KEGGrno:05162
Ccnd3Ratp53 signaling pathway   IEA 6907045 KEGGrno:04115
Ccnd3RatWnt signaling pathway  IEA 6907045 KEGGrno:04310

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#
Reference Title
Reference Citation
1. Cyclin D dysregulation: an early and unifying pathogenic event in multiple myeloma. Bergsagel PL, etal., Blood. 2005 Jul 1;106(1):296-303. Epub 2005 Mar 8.
2. D-type cyclins and G1 progression during liver development in the rat. Boylan JM and Gruppuso PA, Biochem Biophys Res Commun. 2005 May 13;330(3):722-30.
3. [Retrospective study of one year of family therapy in a neurological practice (author's transl)] Gattringer B Nervenarzt 1977 Jun;48(6):326-30.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Circadian regulation of diverse gene products revealed by mRNA expression profiling of synchronized fibroblasts. Grundschober C, etal., J Biol Chem 2001 Dec 14;276(50):46751-8.
7. Induction of D2 and D3 cyclin-encoding genes during promotion of the G1/S transition by prolactin in rat Nb2 cells. Hosokawa Y, etal., Gene 1994 Sep 30;147(2):249-52.
8. Increased expression of CDK11p58 and cyclin D3 following spinal cord injury in rats. Ji Y, etal., Mol Cell Biochem. 2008 Feb;309(1-2):49-60. Epub 2007 Nov 16.
9. Polymorphic loci of E2F2, CCND1 and CCND3 are associated with HER2 status of breast tumors. Justenhoven C, etal., Int J Cancer. 2009 May 1;124(9):2077-81.
10. Expression and prognostic significance of cyclin D3 in ovarian adenocarcinomas. Levidou G, etal., Int J Gynecol Pathol. 2007 Oct;26(4):410-7.
11. Cyclin D3 expression in primary Ta/T1 bladder cancer. Lopez-Beltran A, etal., J Pathol. 2006 May;209(1):106-13.
12. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
13. Critical role of cyclin D3 in TSH-dependent growth of thyrocytes and in hyperproliferative diseases of the thyroid gland. Motti ML, etal., Oncogene. 2003 Oct 23;22(48):7576-86.
14. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
15. Expression of p27((Kip1)), cyclin D3 and Ki67 in BPH, prostate cancer and hormone-treated prostate cancer cells. Nikoleishvili D, etal., Int Urol Nephrol. 2008;40(4):953-9. Epub 2008 Mar 4.
16. Differential enantioselective effects of pentyl-4-yn-valproate on spatial learning in the rat, and neurite outgrowth and cyclin D3 expression in vitro. O'Loinsigh ED, etal., J Neurochem. 2004 Jan;88(2):370-9.
17. Immunoreactivity of p27(Kip1), cyclin D3, and Ki67 in conventional renal cell carcinoma. Pertia A, etal., Int Urol Nephrol. 2009;41(2):243-9. Epub 2008 Aug 5.
18. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
19. Alternative mammary oncogenic pathways are induced by D-type cyclins; MMTV-cyclin D3 transgenic mice develop squamous cell carcinoma. Pirkmaier A, etal., Oncogene. 2003 Jul 10;22(28):4425-33.
20. Cyclin D3 mediates synthesis of a hyaluronan matrix that is adhesive for monocytes in mesangial cells stimulated to divide in hyperglycemic medium. Ren J, etal., J Biol Chem. 2009 Jun 12;284(24):16621-32. Epub 2009 Mar 9.
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PMID:8114739   PMID:8822197   PMID:11809706   PMID:12130539   PMID:12477932   PMID:14706337   PMID:16412096   PMID:19550149   PMID:19672123   PMID:20066559   PMID:21539824   PMID:23109711  
PMID:25596037  



Ccnd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8920,891,696 - 20,987,199 (-)NCBIGRCr8
mRatBN7.2913,394,161 - 13,400,341 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl913,394,169 - 13,489,371 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx921,973,914 - 21,980,097 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0927,038,080 - 27,044,259 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0925,337,315 - 25,343,498 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0915,404,816 - 15,410,905 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl915,404,822 - 15,410,943 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0914,326,227 - 14,332,267 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera911,145,441 - 11,151,481 (-)NCBICelera
Cytogenetic Map9q12NCBI
CCND3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38641,934,933 - 42,050,035 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl641,934,934 - 42,050,357 (-)EnsemblGRCh38hg38GRCh38
GRCh37641,902,671 - 42,017,773 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36642,010,649 - 42,017,530 (-)NCBINCBI36Build 36hg18NCBI36
Build 34642,010,649 - 42,017,530NCBI
Celera643,455,463 - 43,569,077 (-)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef641,621,515 - 41,734,566 (-)NCBIHuRef
CHM1_1641,905,431 - 42,019,143 (-)NCBICHM1_1
T2T-CHM13v2.0641,763,493 - 41,878,294 (-)NCBIT2T-CHM13v2.0
Ccnd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391747,815,976 - 47,910,614 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1747,815,976 - 47,910,616 (+)EnsemblGRCm39 Ensembl
GRCm381747,505,051 - 47,599,689 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1747,505,051 - 47,599,691 (+)EnsemblGRCm38mm10GRCm38
MGSCv371747,642,000 - 47,736,638 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361747,056,739 - 47,062,880 (+)NCBIMGSCv36mm8
Celera1750,938,969 - 51,036,715 (+)NCBICelera
Cytogenetic Map17CNCBI
cM Map1723.37NCBI
Ccnd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554378,268,118 - 8,273,855 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554378,266,523 - 8,273,855 (-)NCBIChiLan1.0ChiLan1.0
CCND3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2556,426,311 - 56,537,983 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1652,296,193 - 52,407,867 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0641,518,421 - 41,630,103 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1642,820,569 - 42,932,944 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl642,820,569 - 42,827,498 (-)Ensemblpanpan1.1panPan2
CCND3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11210,593,786 - 10,688,304 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1210,594,712 - 10,600,891 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1210,623,109 - 10,717,215 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01211,074,540 - 11,169,519 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1211,074,547 - 11,169,151 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11210,604,536 - 10,698,641 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01210,688,499 - 10,783,041 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01210,782,466 - 10,877,073 (-)NCBIUU_Cfam_GSD_1.0
Ccnd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494646,073,366 - 46,160,552 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647617,879,869 - 17,886,827 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647617,799,754 - 17,886,835 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCND3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl737,082,097 - 37,181,366 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1737,087,336 - 37,182,462 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2742,489,107 - 42,493,235 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCND3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11730,107,236 - 30,228,449 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1730,221,598 - 30,227,452 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604441,934,657 - 42,061,231 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccnd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475417,148,076 - 17,194,000 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475417,148,108 - 17,194,626 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Ccnd3
21 total Variants

Predicted Target Of
Summary Value
Count of predictions:73
Count of miRNA genes:64
Interacting mature miRNAs:65
Transcripts:ENSRNOT00000074217
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 19 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9336865213533896Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat

1 to 10 of 19 rows
D8Mgh14  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8q24UniSTS
D2Mit27   No map positions available.
D9Wox28  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8920,898,792 - 20,898,969 (+)Marker Load Pipeline
mRatBN7.2913,401,258 - 13,401,435 (+)MAPPERmRatBN7.2
Rnor_6.0915,411,905 - 15,412,081NCBIRnor6.0
Rnor_5.0914,333,257 - 14,333,433UniSTSRnor5.0
Celera911,152,425 - 11,152,591UniSTS
Cytogenetic Map8q24UniSTS
D9Wox44  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8920,898,327 - 20,898,477 (+)Marker Load Pipeline
mRatBN7.2913,400,793 - 13,400,943 (+)MAPPERmRatBN7.2
Rnor_6.0915,411,440 - 15,411,589NCBIRnor6.0
Rnor_5.0914,332,792 - 14,332,941UniSTSRnor5.0
Celera911,151,957 - 11,152,109UniSTS
Cytogenetic Map8q24UniSTS
RH124354  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2913,394,166 - 13,394,439 (+)MAPPERmRatBN7.2
Rnor_6.0915,404,822 - 15,405,094NCBIRnor6.0
Rnor_5.0914,326,184 - 14,326,456UniSTSRnor5.0
Celera911,145,398 - 11,145,670UniSTS
Cytogenetic Map8q24UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000074217   ⟹   ENSRNOP00000064704
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl913,394,169 - 13,489,371 (-)Ensembl
Rnor_6.0 Ensembl915,404,822 - 15,410,943 (-)Ensembl
RefSeq Acc Id: NM_012766   ⟹   NP_036898
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8920,891,696 - 20,897,875 (-)NCBI
mRatBN7.2913,394,161 - 13,400,341 (-)NCBI
Rnor_6.0915,404,865 - 15,410,905 (-)NCBI
Rnor_5.0914,326,227 - 14,332,267 (-)NCBI
Celera911,145,441 - 11,151,481 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063266663   ⟹   XP_063122733
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8920,891,696 - 20,987,199 (-)NCBI
RefSeq Acc Id: XM_063266665   ⟹   XP_063122735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8920,891,696 - 20,987,114 (-)NCBI
RefSeq Acc Id: XM_063266666   ⟹   XP_063122736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8920,891,696 - 20,987,199 (-)NCBI
RefSeq Acc Id: XM_063266667   ⟹   XP_063122737
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8920,891,696 - 20,987,096 (-)NCBI
1 to 11 of 11 rows
Protein RefSeqs NP_036898 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122733 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122735 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122736 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122737 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB40713 (Get FASTA)   NCBI Sequence Viewer  
  AAH85763 (Get FASTA)   NCBI Sequence Viewer  
  AAH89819 (Get FASTA)   NCBI Sequence Viewer  
  BAA03816 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000064704
GenBank Protein P48961 (Get FASTA)   NCBI Sequence Viewer  
1 to 11 of 11 rows
RefSeq Acc Id: NP_036898   ⟸   NM_012766
- UniProtKB: Q63628 (UniProtKB/Swiss-Prot),   P48961 (UniProtKB/Swiss-Prot),   Q5U321 (UniProtKB/TrEMBL),   M0R5N2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000064704   ⟸   ENSRNOT00000074217
RefSeq Acc Id: XP_063122736   ⟸   XM_063266666
- Peptide Label: isoform X1
- UniProtKB: Q63628 (UniProtKB/Swiss-Prot),   P48961 (UniProtKB/Swiss-Prot),   M0R5N2 (UniProtKB/TrEMBL),   Q5U321 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122733   ⟸   XM_063266663
- Peptide Label: isoform X1
- UniProtKB: Q63628 (UniProtKB/Swiss-Prot),   P48961 (UniProtKB/Swiss-Prot),   M0R5N2 (UniProtKB/TrEMBL),   Q5U321 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122735   ⟸   XM_063266665
- Peptide Label: isoform X1
- UniProtKB: Q63628 (UniProtKB/Swiss-Prot),   P48961 (UniProtKB/Swiss-Prot),   M0R5N2 (UniProtKB/TrEMBL),   Q5U321 (UniProtKB/TrEMBL)
Name Modeler Protein Id AA Range Protein Structure
AF-P48961-F1-model_v2 AlphaFold P48961 1-293 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13696499
Promoter ID:EPDNEW_R7022
Type:initiation region
Name:Ccnd3_1
Description:cyclin D3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0915,410,992 - 15,411,052EPDNEW


1 to 32 of 32 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-28269 BioCyc
Ensembl Genes ENSRNOG00000050258 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000074217 ENTREZGENE
Gene3D-CATH Cyclin-like UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7189593 IMAGE-MGC_LOAD
  IMAGE:7384331 IMAGE-MGC_LOAD
InterPro Cyclin UniProtKB/Swiss-Prot
  Cyclin-like UniProtKB/Swiss-Prot
  Cyclin-like_sf UniProtKB/Swiss-Prot
  Cyclin_C-dom UniProtKB/Swiss-Prot
  Cyclin_N UniProtKB/Swiss-Prot
  Cyclins_cyclin-box UniProtKB/Swiss-Prot
KEGG Report rno:25193 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108760 IMAGE-MGC_LOAD
  MGC:93643 IMAGE-MGC_LOAD
NCBI Gene 25193 ENTREZGENE
PANTHER PTHR10177 UniProtKB/Swiss-Prot
Pfam Cyclin_C UniProtKB/Swiss-Prot
  Cyclin_N UniProtKB/Swiss-Prot
PhenoGen Ccnd3 PhenoGen
PROSITE CYCLINS UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000050258 RatGTEx
SMART CYCLIN UniProtKB/Swiss-Prot
  Cyclin_C UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47954 UniProtKB/Swiss-Prot
TIGR TC228844
UniProt CCND3_RAT UniProtKB/Swiss-Prot
  M0R5N2 ENTREZGENE, UniProtKB/TrEMBL
  P48961 ENTREZGENE
  Q5U321 ENTREZGENE, UniProtKB/TrEMBL
  Q63628 ENTREZGENE
UniProt Secondary Q63628 UniProtKB/Swiss-Prot
1 to 32 of 32 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Ccnd3  Cyclin D3      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_function binds both cdk4 and cdk6 in hepatocytes 1298736
gene_physical_interaction interacts with Cdk4 70761
gene_process plays a key role in the G1/S transition in cell cycle 70761
gene_regulation protein amount is regulated at the transcription level and protein half-life is 25 minutes 70761