Bss17 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL: Bss17 (Bone structure and strength QTL 17) Rattus norvegicus

Symbol: Bss17
Name: Bone structure and strength QTL 17
RGD ID: 1578675
Trait: femur morphology trait   (VT:0000559)    
Measurement Type: femoral neck cortical cross-sectional area   (CMO:0001702)    
LOD Score: 3.8
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.091,907,834 - 15,555,026RGD_MAPPER_PIPELINERnor6.0
Rnor_5.091,861,508 - 14,478,042RGDRnor5.0
RGSC_v3.494,796,492 - 8,991,332RGDRGSC3.4
RGSC_v3.194,796,487 - 8,988,654RGD
Cross Type: Not Available
Strains Crossed: F344/NHsd LEW/NHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
F344/NHsd  (IEA)
LEW/NHsd  (IEA)

References

References - curated
1. Alam I, etal., Bone. 2006 Feb 2;.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3452Ptprsprotein tyrosine phosphatase, receptor type, S91058536010646205Rat
69270Slc5a7solute carrier family 5 member 7952943775330822Rat
619730Tubb4atubulin, beta 4A class IVa999610209968420Rat
3951Vav1vav guanine nucleotide exchange factor 1996175519675167Rat
2293Ccnd3cyclin D391540481615410905Rat
2232C3complement C3997211379747084Rat
3943Pgcprogastricsin91526669915274917Rat
708456Sh3gl1SH3 domain containing GRB2 like 1, endophilin A291103184711055285Rat
621494Nrtnneurturin91029988110306599Rat
628680Uxs1UDP-glucuronate decarboxylase 191116500611240329Rat
727974Tnfsf9TNF superfamily member 9999099429912276Rat
621598Lonp1lon peptidase 1, mitochondrial91042885310441180Rat
621828KhsrpKH-type splicing regulatory protein91001379510023670Rat
62085Rpl36ribosomal protein L3691044122810441981Rat
621145Trip10thyroid hormone receptor interactor 10996892149702353Rat
727959Byslbystin-like91539346115403212Rat
621064Sult1c2sulfotransferase family 1C member 2946542784685418Rat
621013Hdgfl2HDGF like 291097234210991938Rat
621070Kif6kinesin family member 691301697313311971Rat
69278Sema6bsemaphorin 6B91093427310951252Rat
2549Kcnh8potassium voltage-gated channel subfamily H member 8931276183697736Rat
70976Nfyanuclear transcription factor Y subunit alpha91455175214577002Rat
3768Sult1c3sulfotransferase family 1C member 3949310384978847Rat
620613Safbscaffold attachment factor B91045021610471174Rat
1303340Vmacvimentin-type intermediate filament associated coiled-coil protein91033826010341903Rat
1303292Ndufa11NADH:ubiquinone oxidoreductase subunit A1191033410410338163Rat
1306415Med20mediator complex subunit 2091537937915393131Rat
1306128Daam2dishevelled associated activator of morphogenesis 291344488313493154Rat
1305561Satb1SATB homeobox 1921811352277949Rat
735149Gpr108G protein-coupled receptor 108997043009714767Rat
1305902Kat2blysine acetyltransferase 2B944409824492949Rat
3432Pspnpersephin91004475610045314Rat
1305885Sult1c2asulfotransferase family, cytosolic, 1C, member 2a941525884168355Rat
1308423Taf8TATA-box binding protein associated factor 891551304815532992Rat
1309583Tfebtranscription factor EB91520814115264101Rat
1308471Mocs1molybdenum cofactor synthesis 191349370513513972Rat
1305941Plcl2phospholipase C-like 2917825361984654Rat
1308727Apobec2apolipoprotein B mRNA editing enzyme catalytic subunit 291452921814542731Rat
1308299Oard1O-acyl-ADP-ribose deacylase 191454295714551519Rat
1307182RGD1307182similar to RIKEN cDNA B430306N03 gene91464542914654376Rat
1310226Frs3fibroblast growth factor receptor substrate 391529779415306850Rat
1309841Trem2triggering receptor expressed on myeloid cells 291461154114618076Rat
1311386Foxp4forkhead box P491506837815124962Rat
1305477Trem3triggering receptor expressed on myeloid cells 391471393514725945Rat
1309467Trem1triggering receptor expressed on myeloid cells 191472788714743371Rat
1311406Ncr2natural cytotoxicity triggering receptor 291477949614787872Rat
1563979Prickle4prickle planar cell polarity protein 491530690115313047Rat
1560901RGD1560901similar to actin, alpha 1, skeletal muscle952160405217142Rat
1565035Crb3crumbs cell polarity complex component 3999825299986896Rat
1563347Rftn1raftlin lipid raft linker 191274088512942358Rat
1564986LOC301165similar to hypothetical protein 4932415M13947319894741552Rat
1566020Stap2signal transducing adaptor family member 291106460511070138Rat
1563228Dus3ldihydrouridine synthase 3-like91028944010294213Rat
1359641Adgre4adhesion G protein-coupled receptor E4980560348200262Rat
1560404MGC116197similar to RIKEN cDNA 1700001E04991284169143200Rat
1559808RGD1559808similar to 40S ribosomal protein S26932380383238497Rat
1359464Lrg1leucine-rich alpha-2-glycoprotein 191095242410954664Rat
1562851RGD1562851similar to ribosomal protein L31921073422120579Rat
1559663St6gal2ST6 beta-galactoside alpha-2,6-sialyltransferase 2969662917060499Rat
1560271MdfiMyoD family inhibitor91516611815184469Rat
1310513Usp49ubiquitin specific peptidase 4991531487515375365Rat
1561112Fem1afem-1 homolog A91079893410801140Rat
1559960RGD1559960similar to Sulfotransferase K1 (rSULT1C2)948667054879861Rat
1562392RGD1562392similar to Sulfotransferase K1 (rSULT1C2)942413004623136Rat
1311831Lrfn2leucine rich repeat and fibronectin type III domain containing 291384575614015360Rat
1585834LOC680955hypothetical protein LOC68095591490486714906407Rat
1585869LOC680920similar to natural cytotoxicity triggering receptor 291485076314864999Rat
1583567Tomm6translocase of outer mitochondrial membrane 691531334615314872Rat
1582873Pot1bprotection of telomeres 1B978456977902270Rat
1582883Vom2r77vomeronasal 2 receptor, 77977490907815144Rat
1587368Unc5clunc-5 family C-terminal like91449408014510302Rat
1583850Fsd1fibronectin type III and SPRY domain containing 191107667011080190Rat
1585239LOC688769similar to Reticulocalbin-1 precursor91210096112102298Rat
1585910LOC679679similar to brain abundant, membrane attached signal protein 1941984994200170Rat
1587230LOC501445similar to Der1-like domain family, member 1987727738776415Rat
1587799LOC685976similar to RalA binding protein 191158994011692984Rat
1583959LOC691414hypothetical protein LOC691414982817478442062Rat
1561662RGD1561662similar to AI661453 protein91554546015582567Rat
1565959RGD1565959RGD156595991488324114896662Rat
1359646Gtf2f1general transcription factor IIF subunit 191003280610042392Rat
1565175Treml1triggering receptor expressed on myeloid cells-like 191459717214603622Rat
1584025LOC690144similar to heterogeneous nuclear ribonucleoprotein D-like964750556477447Rat
1563631Znrf4zinc and ring finger 491053534010536528Rat
1588579Rfx2regulatory factor X291021619410283467Rat
1588580Acsbg2acyl-CoA synthetase bubblegum family member 291017231710203550Rat
1588581Mllt1MLLT1, super elongation complex subunit91011038910155305Rat
1588582Acer1alkaline ceramidase 191006197810093588Rat
1588583Clppcaseinolytic mitochondrial matrix peptidase proteolytic subunit91004871510056068Rat
1588585Slc25a41solute carrier family 25, member 4191000481110012539Rat
1588586Slc25a23solute carrier family 25 member 239998798810003599Rat
1593501LOC689363similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)996056059608368Rat
1589467Ebi3Epstein-Barr virus induced 391111087411114843Rat
1588769LOC689719similar to within bgcn homolog987069288708486Rat
1588577Safb2scaffold attachment factor B291047161810492775Rat
1590229LOC685739similar to Reticulocalbin-1 precursor91240613512407439Rat
1589601Yju2YJU2 splicing factor homolog91109891411108806Rat
1591345LOC685668hypothetical protein LOC68566891234194012352007Rat
1588569Vom2r76vomeronasal 2 receptor, 76976435337667888Rat
1588571Vom2r79vomeronasal 2 receptor, 79992144299263050Rat
1590865Chaf1achromatin assembly factor 1 subunit A91100086911027631Rat
1590866Ubxn6UBX domain protein 691099551611000643Rat
1590867Plin4perilipin 491096349410972360Rat
1590868Ticam1toll-like receptor adaptor molecule 191078018510790280Rat
1590869Dennd1cDENN domain containing 1C999760159982349Rat
1592929LOC681600similar to eukaryotic translation initiation factor 4, gamma 1 isoform a955528795588573Rat
1589335MpndMPN domain containing91105537011061611Rat
1588572Tnfsf14TNF superfamily member 14997613639765461Rat
1588573Cd70Cd70 molecule998425859845728Rat
1588574Tnfaip8l1TNF alpha induced protein 8 like 191089494910905647Rat
1588575Dpp9dipeptidyl peptidase 991084649310882560Rat
1588576Kdm4blysine demethylase 4B91065603510734127Rat
1588578Micos13mitochondrial contact site and cristae organizing system subunit 1391044656710449566Rat
1589660LOC367399similar to Transaldolase960444046045422Rat
1588537LOC360998hypothetical LOC36099891241512112429048Rat
1588543Brcc3BRCA1/BRCA2-containing complex, subunit 3998633809865920Rat
1590885Shdsrc homology 2 domain-containing transforming protein D91109004811098813Rat
1588473LOC367454similar to Alpha-(1,3)-fucosyltransferase (Galactoside 3-L-fucosyltransferase) (Fucosyltransferase 6) (FUCT-VI)91030905010318899Rat
1588475LOC367446similar to RalA binding protein 191169661311700946Rat
1589899LOC689679similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)988484738864754Rat
1359214Adgre1adhesion G protein-coupled receptor E1994318889585883Rat
1589919LOC689659similar to Reticulocalbin-1 precursor986604328669120Rat
1584839LOC679702similar to potassium channel, subfamily K, member 1691300158713005602Rat
1589602Plin5perilipin 591095601310961782Rat
1589603Mydgfmyeloid-derived growth factor91088552110892744Rat
1589604Ranbp3RAN binding protein 391034419010381415Rat
1589605LOC501280similar to myosin regulatory light chain-like91020803210208950Rat
1587021Treml4triggering receptor expressed on myeloid cells-like 491466869114707122Rat
1587039Treml2triggering receptor expressed on myeloid cells-like 291465996714668313Rat
1591762LOC680438hypothetical protein LOC68043891080197710805676Rat
1595447Prr22proline rich 2291028675510289340Rat
1591748Arrdc5arrestin domain containing 591076011310766199Rat
1597247LOC691647similar to Reticulocalbin-1 precursor984261948429524Rat
1591714Dazldeleted in azoospermia-like91263398312651017Rat
1594018Tspo2translocator protein 291451037814514609Rat
1592341Vom2r-ps141vomeronasal 2 receptor, pseudogene 141991637439164642Rat
1594725LOC690533similar to Reticulocalbin-1 precursor91240883112410774Rat
1594167Catsperdcation channel sperm associated auxiliary subunit delta91039030710428666Rat
1593238Sgo1shugoshin 1944201584435939Rat
1592297LOC689465similar to Poly(rC)-binding protein 4 (Alpha-CP4)986527868655528Rat
1598126Alkbh7alkB homolog 791004537510047507Rat
1595854Plin3perilipin 391076973910781659Rat
1595855Uhrf1ubiquitin-like with PHD and ring finger domains 191073821110758403Rat
1595856LOC316124similar to gonadotropin-regulated long chain acyl-CoA synthetase91015874510188013Rat
1626052Vom2r-ps140vomeronasal 2 receptor, pseudogene 140993188449332098Rat
2321302LOC100360856hypothetical protein LOC100360856986247918632955Rat
2322080Sh2d3aSH2 domain containing 3A996789299688387Rat
2322325LOC100360328hypothetical LOC100360328961662456172861Rat
2322726LOC100360123antigenic determinant of rec-A protein-like91378150513782672Rat
2323380LOC100363260FCF1 small subunit-like927086282725167Rat
2324265LOC10036269340S ribosomal protein S21-like91111632611117846Rat
2323608LOC100359586serine/threonine-protein kinase MARK2-like943780754393273Rat
2323707LOC100362987ribosomal protein S27-like91073752410737845Rat
2325434Mir7bmicroRNA 7b91081243210812541Rat
6486900LOC100912424partner of Y14 and mago-like91212610812127420Rat
6487494LOC100912393mRNA-decapping enzyme 2-like939409483965964Rat
6488254LOC100912180partner of Y14 and mago-like988126308813662Rat
6489022LOC100912080partner of Y14 and mago-like988088318812656Rat
6488614LOC100912118partner of Y14 and mago-like991087049126566Rat
6488061LOC100912261protein FAM64A-like91200133012002079Rat
6488883LOC100912048partner of Y14 and mago-like988044788806110Rat
6488897LOC100912052mRNA-decapping enzyme 2-like939169843930119Rat
6486683LOC100912496reticulocalbin-1-like91229509812296215Rat
6494554LOC10091112660S ribosomal protein L5-like91361394613615661Rat
6490497LOC10091182140S ribosomal protein S8-like91122941211230427Rat
6493937LOC100911278cation channel sperm-associated protein subunit beta-like979432108042200Rat
6499500LOC100910235sulfotransferase 1C1-like943239974328175Rat
6502816LOC100909645ankyrin repeat domain-containing protein 24-like999310399942465Rat
6499794LOC100910172brain acid soluble protein 1-like941906784191958Rat
6496783LOC100910812F-box/WD repeat-containing protein 2-like961519626156610Rat
6500227LOC100910135brain acid soluble protein 1-like940507074052210Rat
6500449LOC100910057sulfotransferase 1C2-like940728134110143Rat
6497396LOC100910668uncharacterized LOC10091066891494715314952596Rat
6497849LOC100910526sulfotransferase 1C2-like948206784834271Rat
6576126Trnak-cuutransfer RNA lysine (anticodon CUU)91068136310681435Rat
7502056LOC102550047uncharacterized LOC10255004791252328512524646Rat
7514210LOC102549587uncharacterized LOC102549587940013234009812Rat
7515302LOC102548161uncharacterized LOC10254816191050770610513607Rat
7527403LOC10255123240S ribosomal protein S17-like931741803174949Rat
7507412LOC102554183uncharacterized LOC102554183974854337488217Rat
7501089LOC102554220spidroin-1-like91524951515264452Rat
7534526LOC10255597160S ribosomal protein L35-like91082672010827122Rat
7538729LOC102551325cofilin-1-like932043763205001Rat
7540380LOC102549438partner of Y14 and mago-like91212802112130001Rat
7634142LOC102551938sulfotransferase 1C2-like948076994817430Rat
7650881LOC102547352uncharacterized LOC10254735291383044313831747Rat
7651541LOC102549477heat shock 70 kDa protein 14-like995411179557504Rat
7653649LOC102546816uncharacterized LOC10254681691177886211785367Rat
7624478LOC102551129uncharacterized LOC10255112991376801713780495Rat
7577758LOC102550776reticulocalbin-1-like91232538512336491Rat
7642378LOC102548597NEDD4-binding protein 1-like978913167894548Rat
7629065LOC102548435uncharacterized LOC10254843591462873114636577Rat
7643518LOC102547039disheveled-associated activator of morphogenesis 2-like91206777912069567Rat
7570521LOC102548200uncharacterized LOC10254820091441125314414716Rat
7594246LOC102554116uncharacterized LOC10255411691504222815047408Rat
7556959LOC102548982serine/threonine-protein kinase SIK3-like976820227685193Rat
7604654LOC102556486thioredoxin-like protein 4A-like91165587811656089Rat
7584379LOC10255611440S ribosomal protein S8-like91132372611329935Rat
7692210LOC102546625uncharacterized LOC10254662591160814211649050Rat
7750939LOC102551762uncharacterized LOC102551762946214254623133Rat
7694240LOC102555289zinc finger protein 709-like91112387711151368Rat
7706024LOC102547840uncharacterized LOC10254784091438154314387546Rat
7685759LOC102546395N-alpha-acetyltransferase 11-like91165472911655799Rat
7683517LOC102547709uncharacterized LOC10254770991420754814222528Rat
7734302LOC102556298rho GTPase-activating protein 20-like91169669411733466Rat
7740924LOC102547198uncharacterized LOC102547198937352253740513Rat
7710987LOC102554309uncharacterized LOC10255430991527100815274508Rat
9135511LOC103690499cAMP-dependent protein kinase inhibitor gamma pseudogene91534117315341822Rat
9213679LOC103693193uncharacterized LOC103693193996633609669186Rat
9097022LOC103693209natural cytotoxicity triggering receptor 2-like91479451514798209Rat
9104932LOC103690493uncharacterized LOC103690493957209715730274Rat
9188303LOC103693187inactive phospholipase C-like protein 2920191442021998Rat
9112006LOC10369049560S ribosomal protein L27a pseudogene961733526279299Rat
9157403LOC103693199reticulocalbin-1 pseudogene986772888705702Rat
9194633LOC103693197serine/arginine repetitive matrix protein 1-like919836751987771Rat
9195731LOC103693192uncharacterized LOC103693192986002018601052Rat
9117384LOC103690491uncharacterized LOC103690491931280333138652Rat
9166489LOC103693202uncharacterized LOC10369320291224052412242555Rat
9205249LOC103690494uncharacterized LOC103690494970800687082742Rat
9207571LOC103693191uncharacterized LOC103693191983985988410527Rat
9266857LOC103693195ralA-binding protein 1-like91168990311700817Rat
9270263LOC103693196uncharacterized LOC10369319691160634911607726Rat
9374124LOC103693189protein tyrosine phosphatase type IVA 1938958203900891Rat
9246599LOC103690237uncharacterized LOC103690237984209348422613Rat
9379127LOC10369049260S ribosomal protein L39 pseudogene923164132318895Rat
9302589LOC103690500uncharacterized LOC10369050091550926615511413Rat
9462719LOC103693194uncharacterized LOC10369319491084177710846432Rat
9318256LOC103690496uncharacterized LOC103690496979149907915767Rat
9467065LOC10369319060S ribosomal protein L29 pseudogene979871017987587Rat
9391503LOC103690497U1 small nuclear ribonucleoprotein C pseudogene994748689476392Rat
9394127LOC103693198reticulocalbin-1 pseudogene985654828597250Rat
9403739LOC103693203uncharacterized LOC10369320391238770312388481Rat
9685200TincrTINCR ubiquitin domain containing91049929010501522Rat
11357182LOC10835201660S ribosomal protein L26 pseudogene925773382577824Rat
11463843LOC108348336uncharacterized LOC10834833691258099212582574Rat
11465303LOC108351888uncharacterized LOC10835188891368402813703212Rat
11473325Trnak-cuu11transfer RNA lysine (anticodon CUU) 1191068136310681435Rat
11474099LOC108351884uncharacterized LOC10835188491198458811995363Rat
11362434LOC108351870uncharacterized LOC108351870945902764612833Rat
11436655LOC108351883uncharacterized LOC10835188391196601911971471Rat
11368662LOC108351880uncharacterized LOC108351880983609368368789Rat
11447770LOC108351878uncharacterized LOC108351878986420648829856Rat
11438663LOC10835187660S ribosomal protein L7 pseudogene980605878061464Rat
11439740LOC108351868uncharacterized LOC108351868929921393001924Rat
11452099LOC108351882glyceraldehyde-3-phosphate dehydrogenase pseudogene91128671811287716Rat
11383473LOC108351872uncharacterized LOC108351872959258075930841Rat
11383607LOC108351879uncharacterized LOC108351879985776998605761Rat
11416338LOC108351869uncharacterized LOC108351869930185073024418Rat
11396250LOC108351885uncharacterized LOC10835188591247078312482984Rat
11397303LOC108351871uncharacterized LOC108351871945489834551177Rat
11398786LOC108351886uncharacterized LOC10835188691313952713162845Rat
11410268LOC108351873endogenous retrovirus group K member 9 Pol protein-like970899567091961Rat
11378803LOC108351874uncharacterized LOC108351874973533147358653Rat
11390241LOC108351889uncharacterized LOC10835188991390074413920361Rat
11404703LOC10835198860S ribosomal protein L35 pseudogene91131782311319024Rat
11503387LOC108352017endogenous retrovirus group K member 9 Pol protein-like972768147279168Rat
11515732LOC108351881uncharacterized LOC108351881999536679963684Rat
11484729LOC108351887uncharacterized LOC10835188791359827913624912Rat
11485967LOC108351875vomeronasal type-2 receptor 116-like975362887537768Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34264D9Mgh5150933097543309921Ratregion
36151D9Rat4616991270788312708039Ratregion
37468D9Rat162233919078341908054Ratregion
37692D9Rat8221691325047813250697Ratregion
37776D9Rat8820991306447913064676Ratregion
36438D9Rat43140944013954401526Ratregion
35623D9Rat4113391555490115555026Ratregion
35695D9Rat44176928809772881145Ratregion
35733D9Rat45158926641412664304Ratregion
40170D9Rat13513591371378713713917Ratregion
41218D9Rat13413091547835215478485Ratregion
41272D9Rat139137933078833308009Ratregion
41490D9Rat138167963263856326529Ratregion
44549D9Got1511591368396513684079Ratregion
44550D9Got1226491297014412970406Ratregion
44551D9Got1440191379755013797949Ratregion
44552D9Wox2113691550917815509311Ratregion
44553D9Got1615191539119115391341Ratregion
60643D9Got10173953073005307471Ratregion
60652D9Got1316491318848713188650Ratregion
60657D9Got13918491015603610156219Ratregion
60659D9Got2151927865022786652Ratregion
60661D9Got3292921503782150669Ratregion
60667D9Got6172921505022150674Ratregion
60668D9Got7192922802752280466Ratregion
60669D9Got8286926576102657895Ratregion
60670D9Got9147931730563173200Ratregion
60825D9Wox20107965254086525517Ratregion
60826D9Wox22152957240925724247Ratregion
60827D9Wox23160957240915724254Ratregion
1303360D9Got20020691070652810706733Ratregion
62508D9Uia1187970509137051053Ratregion
631290D9Wox249991086939110869489Ratregion
1631969D9Wox2816791541190515412081Ratregion
1639864D9Wox4112891095063610950763Ratregion
1636087D9Wox4491541144015411589Ratregion
1636259D9Cebr191280829212808529Ratregion
1637006D9Got245229959760455976273Ratregion
1632443D9Got1276996787899679061Ratregion
1634267D9Got231267965397836540050Ratregion
2325892D6Hmgc3246979514187951643Ratregion
7206808AI11508710791200097712001083Ratregion
5036191D17Wsu104e23191089251310892743Ratregion
7206552UniSTS:54704478191000200110002781Ratregion
7206560UniSTS:54705726691001225710012522Ratregion
5037183RH9110214191107038511070525Ratregion
5028595AU015179126999826039982728Ratregion
5028637RH125689201964760996476298Ratregion
5028643RH12574625091015499510155244Ratregion
5031526AU048038185937253783725562Ratregion
5031956AU046569252936410383641288Ratregion
5026628RH13293519891455054314550740Ratregion
5026726RH13330119591531500315315197Ratregion
5029383RH144584188997163669716553Ratregion
5032167RH12603921791004216410042380Ratregion
5034992Nrtn10191030637110306471Ratregion
5029919BE10318319791383154613831742Ratregion
5030057AW53151121791301699313017209Ratregion
5035204BE09855015991552304715523205Ratregion
5027723SGC32809133999674869967618Ratregion
5033153RH13779517791397548313975657Ratregion
5025204RH12741621491531438515314767Ratregion
5027819RH9486719091457470414574893Ratregion
5028195D17Mit88146997198629720007Ratregion
5033551RH13923912191457672214576842Ratregion
5033593RH13939323891065546810655705Ratregion
5031029BE12123316791511086715111033Ratregion
5033751RH13998719091449431314494502Ratregion
5025782RH12964318991004564610045834Ratregion
5025868RH13000119791004874610048942Ratregion
5055955RH14409920891001718410017391Ratregion
5056195RH144238106999348679934972Ratregion
5051725RH94621149996175739617721Ratregion
5053913RH14292324391290273312902975Ratregion
5052147RH9486619091457469414574883Ratregion
5055353RH14375210491073369110733794Ratregion
5054461RH143237253964755516475799Ratregion
5054743RH14340017491043251810433277Ratregion
5057882BF39288114391438719114387333Ratregion
5055161RH14364113091462906714629196Ratregion
5056449RH14438521491538179415382007Ratregion
5055249RH143692133933345123334644Ratregion
5052551U05252157922743282274484Ratregion
5058984BE10266915091460976014609909Ratregion
5055679RH14394022391033387710334099Ratregion
5050358RH13401018091052508710525269Ratregion
5053597RH14274113991554402315544161Ratregion
5052555AU04090914591100023811000382Ratregion
5051176RH13448319791078135710781553Ratregion
5051248RH13452420091099980311000266Ratregion
5050802RH13426618491108868511088868Ratregion
5044466RH13061918091302989513030074Ratregion
5044610RH13070319591512461415124808Ratregion
5041036RH12862620291454239914542600Ratregion
5043762RH130212189998638459864033Ratregion
5044988RH130918180999963289997580Ratregion
5041724RH129022183946228524623034Ratregion
5041724RH129022183941544424154624Ratregion
5044612RH130704206997466909746991Ratregion
5046328RH1316890999827149983264Ratregion
5047532RH13238120991457467114574879Ratregion
5045998RH131500190997144639714652Ratregion
5049384RH133450189949311114931299Ratregion
5049384RH133450189943240734324261Ratregion
5049430RH133476180964770456477224Ratregion
5046956RH13205120591049248410492688Ratregion
5048574RH13298219591097208610972280Ratregion
5042204RH12929921091531462115314830Ratregion
5043066RH12981218791089251810892704Ratregion
5042570RH12951420391109018611090388Ratregion
5043778RH13022219091349287213493061Ratregion
5040454RH12829220691454130014541505Ratregion
5072624RH136957217986243038624516Ratregion
5075722RH13875923091075649310756722Ratregion
5076364RH13913212491494747514947598Ratregion
5072558RH13691818091034426010344439Ratregion
5072718RH13701315091105509611055245Ratregion
5080612RH14168019191099811710998692Ratregion
5077750RH139937189994320129432200Ratregion
5077456RH139767199922752272275425Ratregion
5078316RH14027020691540288215403087Ratregion
5079836RH141231219996170849617302Ratregion
5079102RH14073614591096138210961526Ratregion
5072912RH137126203999682209968422Ratregion
5072940RH13714218091349371013493889Ratregion
5073150RH137268161999310549931214Ratregion
5079200RH14079419891033305910333256Ratregion
5080266RH14148120191100088711001087Ratregion
5080270RH14148320091065689410657093Ratregion
5071426RH13507519191095096810951158Ratregion
5073630RH13754716291550928815509448Ratregion
5070828RH13472920191109524711095447Ratregion
5071184RH13493618591459720014597384Ratregion
5071192RH13494022091109900911099228Ratregion
5073414RH13742218691294321012943396Ratregion
5071960RH13538418191553979215539972Ratregion
5072170RH13669312391455255714552679Ratregion
5071622RH13518918791065607510656261Ratregion
5063376BI30178720991431327614313485Ratregion
5066842AU048118196986283628628619Ratregion
5067004AU04802217391166168211661854Ratregion
5067640AU04762312091286920412869323Ratregion
5068298AU047229220999017279901939Ratregion
5068548AU04708019491505755615057749Ratregion
5069246AU04662328991316675013167033Ratregion
5060360AW52513516891068543310685600Ratregion
5062684BF40384321291376799713768449Ratregion
5062148BE10626318091538229015382469Ratregion
5063602BE10782015091540122715401385Ratregion
5066576AU048275196989243388924514Ratregion
5086598AA89179620991531461715314825Ratregion
5082751BF39002024591549693115497175Ratregion
5089817AU049381278997469999747276Ratregion
5083255BI27583710491526731815268076Ratregion
5088247AU04845419291489819214898383Ratregion
5089297AU04907220791286908812869294Ratregion
5083637BI27652818891005569510055882Ratregion
5089659AU04928625591325047813250732Ratregion
5087805D5Wsu145e276964771586477435Ratregion
5085451BM39039516091363840713638566Ratregion
5088419AU04855820591547837015478556Ratregion
5088569AU04864812291029795010298071Ratregion
5090429AU049745282960227676023048Ratregion
5088909AU048842138996851399685276Ratregion
5081006RH14190915891554597715546134Ratregion
5503224UniSTS:237297319987739858774299Ratregion
5503268UniSTS:23766725791049098710491243Ratregion
5507819REN5932125391492358414923836Ratregion
5505506D4S33301671968050786806748Ratregion
5505124Khsrp94191002180910022749Ratregion
5506491D11S41431536953696475371182Ratregion
5506698REN3602081491342215013422963Ratregion
5507005fj02h10.x1332927452332745564Ratregion
5501936MARC_17747-17748:1031760580:1502997127179713218Ratregion
5500424REN6052925091521203615212285Ratregion
5499697Dazl110691263956412640669Ratregion
5502303RH12435427391540482215405094Ratregion
5500414REN5958323691497999614980231Ratregion
5500416REN5959524091498268914982928Ratregion
5500418REN5982725291504216215042413Ratregion
5500420REN5999425491508434115084594Ratregion
5500422REN6051524791520874715208993Ratregion
5500450AW184596286952166795216964Ratregion
5503436stSG63486098491511311015114093Ratregion
5500897D4S157952291290786612908387Ratregion
5505227Safb130491045703710458340Ratregion
5501870MARC_16413-16414:1018631384:1091047935310479935Ratregion
5501870MARC_16413-16414:1018631384:1091045692610457427Ratregion
5502022MARC_24021-24022:1029778648:1606999671129967717Ratregion
5502106MARC_4447-4448:966894303:118291089106010892377Ratregion
5502371RH12464618791015494610155132Ratregion
Position Markers

Flank 1: (D9Rat162)
Rat AssemblyChrPosition (strand)Source
Rnor_6.091,907,834 - 1,908,054NCBI
Rnor_5.091,861,508 - 1,861,728UniSTS
RGSC_v3.494,796,492 - 4,796,713RGD
RGSC_v3.494,796,493 - 4,796,713UniSTS
RGSC_v3.194,796,487 - 4,796,788RGD
Celera9273,295 - 273,515UniSTS
Cytogenetic Map9q11UniSTS
SHRSP x BN Map90.0UniSTS
SHRSP x BN Map90.0RGD
Flank 2: (D9Rat41)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0915,554,901 - 15,555,026NCBI
Rnor_5.0914,477,917 - 14,478,042UniSTS
RGSC_v3.498,991,207 - 8,991,332UniSTS
RGSC_v3.498,991,206 - 8,991,332RGD
RGSC_v3.198,988,529 - 8,988,654RGD
Celera911,284,240 - 11,284,365UniSTS
Cytogenetic Map9q12UniSTS
RH 3.4 Map946.9RGD
RH 3.4 Map946.9UniSTS
RH 2.0 Map948.0RGD
SHRSP x BN Map911.8399RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9116520166Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9129467098Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9140383872Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9140383872Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9140383872Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9145029794Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9105522293442944Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9190783415555026Rat
631533Iresp3Immunoglobin response QTL316.2blood immunoglobulin E amount (VT:0002492)serum total immunoglobulin E level (CMO:0001542)920055833309921Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9235572247355722Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9235572247355722Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9288097747375681Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9288097747880977Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9498609549986095Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9498609549986095Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9572425425692342Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RChigh CD8 T cell count to CD45RClow CD8 T cell count ratio (CMO:0001990)91086939115509311Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)91221677157216771Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)91242546357425463Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)91242546357425463Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91555490147249201Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
 



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.