Foco8 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Foco8 (Food consumption QTL 8) Rattus norvegicus

Symbol: Foco8
Name: Food consumption QTL 8
RGD ID: 7411592
Trait: eating behavior trait   (VT:0001431)    
Measurement Type: feed conversion ratio   (CMO:0001312)    
LOD Score: 7.4
P Value: 0.001
Variance: 45.6
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.291 - 37,999,212RGD_MAPPER_PIPELINE
Rnor_6.091 - 40,383,872RGD_MAPPER_PIPELINERnor6.0
Rnor_5.091 - 39,272,707RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.491 - 33,599,535RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: F344/IcoCrlf LOU/NimrOlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
Body Weight  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
1. Marissal-Arvy N, etal., Obesity (Silver Spring). 2013 Apr 17. doi: 10.1002/oby.20485.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
620936Rab5aRAB5A, member RAS oncogene family959106065Rat
1566407EfhbEF hand domain family, member B947988120800Rat
9400366LOC103690615transmembrane protein 234-like9110227111032Rat
1596997LOC503237similar to Chromatin assembly factor 1 subunit CG4236-PA9202517203763Rat
2323495LOC100359745golgi SNAP receptor complex member 1-like9246311246832Rat
1592283LOC689479similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)9456647464804Rat
7545271LOC102554219reticulocalbin-1-like9548204552206Rat
6503332LOC100909507transcription factor AP-2-delta-like9639053639616Rat
2318601LOC100365684hypothetical LOC1003656849733538734395Rat
7657956LOC102554555uncharacterized LOC1025545559771355820012Rat
2323094LOC100359951ribosomal protein S20-like910120441012567Rat
1561626Tbc1d5TBC1 domain family, member 5911446411747732Rat
11459479LOC108348193uncharacterized LOC108348193914078791432032Rat
9249244LOC103690489uncharacterized LOC103690489915257871535591Rat
7593829LOC102555513heterogeneous nuclear ribonucleoprotein A1-like915951831599672Rat
7751678LOC10255542160S ribosomal protein L10-like916013451605296Rat
9431955Ndufb1l1NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1-like 1916261341626858Rat
2320915LOC100361045rCG43589-like916562671670649Rat
9277122LOC103693186uncharacterized LOC103693186916674711669109Rat
1305941Plcl2phospholipase C-like 2917825361984654Rat
9301354LOC103693188uncharacterized LOC103693188917864921799428Rat
9194633LOC103693197serine/arginine repetitive matrix protein 1-like919836751987771Rat
9188303LOC103693187inactive phospholipase C-like protein 2920191442021998Rat
1562851RGD1562851similar to ribosomal protein L31921073422120579Rat
1305561Satb1SATB homeobox 1921811352277949Rat
9379127LOC10369049260S ribosomal protein L39 pseudogene923164132318895Rat
11357182LOC10835201660S ribosomal protein L26 pseudogene925773382577824Rat
2323380LOC100363260FCF1 small subunit-like927086282725167Rat
11439740LOC108351868uncharacterized LOC108351868929921393001924Rat
11416338LOC108351869uncharacterized LOC108351869930185073024418Rat
2549Kcnh8potassium voltage-gated channel subfamily H member 8931276183697736Rat
9117384LOC103690491uncharacterized LOC103690491931280333138652Rat
7527403LOC10255123240S ribosomal protein S17-like931741803174949Rat
7538729LOC102551325cofilin-1-like932043763205001Rat
1559808RGD1559808similar to 40S ribosomal protein S26932380383238497Rat
7740924LOC102547198uncharacterized LOC102547198937352253740513Rat
6488897LOC100912052mRNA-decapping enzyme 2-like939169843930119Rat
6487494LOC100912393mRNA-decapping enzyme 2-like939409483965964Rat
7514210LOC102549587uncharacterized LOC102549587940013234009812Rat
6500449LOC100910057sulfotransferase 1C2-like940728134110143Rat
1305885Sult1c2asulfotransferase family, cytosolic, 1C, member 2a941525884168355Rat
6499794LOC100910172brain acid soluble protein 1-like941906784191958Rat
1585910LOC679679similar to brain abundant, membrane attached signal protein 1941984994200170Rat
1593238Sgo1shugoshin 1944201584435939Rat
1305902Kat2blysine acetyltransferase 2B944409824492949Rat
11397303LOC108351871uncharacterized LOC108351871945489834551177Rat
11362434LOC108351870uncharacterized LOC108351870945902764612833Rat
7750939LOC102551762uncharacterized LOC102551762946214254623133Rat
621064Sult1c2sulfotransferase family 1C member 2946542784685418Rat
1564986LOC301165similar to hypothetical protein 4932415M13947319894741552Rat
7634142LOC102551938sulfotransferase 1C2-like948076994817430Rat
1559960RGD1559960similar to Sulfotransferase K1 (rSULT1C2)948667054879861Rat
3768Sult1c3sulfotransferase family 1C member 3949310384978847Rat
1560901RGD1560901similar to actin, alpha 1, skeletal muscle952160405217142Rat
69270Slc5a7solute carrier family 5 member 7952943775330822Rat
1592929LOC681600similar to eukaryotic translation initiation factor 4, gamma 1 isoform a955528795588573Rat
9104932LOC103690493uncharacterized LOC103690493957209715730274Rat
11383473LOC108351872uncharacterized LOC108351872959258075930841Rat
1589660LOC367399similar to Transaldolase960444046045422Rat
6496783LOC100910812F-box/WD repeat-containing protein 2-like961519626156610Rat
2322325LOC100360328hypothetical LOC100360328961662456172861Rat
9112006LOC10369049560S ribosomal protein L27a pseudogene961733526279299Rat
1584025LOC690144similar to heterogeneous nuclear ribonucleoprotein D-like964750556477447Rat
1559663St6gal2ST6 beta-galactoside alpha-2,6-sialyltransferase 2969662917060499Rat
9205249LOC103690494uncharacterized LOC103690494970800687082742Rat
11410268LOC108351873endogenous retrovirus group K member 9 Pol protein-like970899567091961Rat
11503387LOC108352017endogenous retrovirus group K member 9 Pol protein-like972768147279168Rat
11378803LOC108351874uncharacterized LOC108351874973533147358653Rat
7507412LOC102554183uncharacterized LOC102554183974854337488217Rat
11485967LOC108351875vomeronasal type-2 receptor 116-like975362887537768Rat
1588569Vom2r76vomeronasal 2 receptor, 76976435337667888Rat
7556959LOC102548982serine/threonine-protein kinase SIK3-like976820227685193Rat
1582883Vom2r77vomeronasal 2 receptor, 77977490907815144Rat
1582873Pot1bprotection of telomeres 1B978456977902270Rat
7642378LOC102548597NEDD4-binding protein 1-like978913167894548Rat
9318256LOC103690496uncharacterized LOC103690496979149907915767Rat
9467065LOC10369319060S ribosomal protein L29 pseudogene979871017987587Rat
1359641Adgre4adhesion G protein-coupled receptor E4980560348200262Rat
11438663LOC10835187660S ribosomal protein L7 pseudogene980605878061464Rat
1583959LOC691414hypothetical protein LOC691414982817478442062Rat
11368662LOC108351880uncharacterized LOC108351880983609368368789Rat
9207571LOC103693191uncharacterized LOC103693191983985988410527Rat
9246599LOC103690237uncharacterized LOC103690237984209348422613Rat
1597247LOC691647similar to Reticulocalbin-1 precursor984261948429524Rat
9394127LOC103693198reticulocalbin-1 pseudogene985654828597250Rat
9195731LOC103693192uncharacterized LOC103693192986002018601052Rat
2321302LOC100360856hypothetical protein LOC100360856986247918632955Rat
11447770LOC108351878uncharacterized LOC108351878986420648829856Rat
1592297LOC689465similar to Poly(rC)-binding protein 4 (Alpha-CP4)986527868655528Rat
1589919LOC689659similar to Reticulocalbin-1 precursor986604328669120Rat
9157403LOC103693199reticulocalbin-1 pseudogene986772888705702Rat
1588769LOC689719similar to within bgcn homolog987069288708486Rat
1587230LOC501445similar to Der1-like domain family, member 1987727738776415Rat
6488883LOC100912048partner of Y14 and mago-like988044788806110Rat
6489022LOC100912080partner of Y14 and mago-like988088318812656Rat
6488254LOC100912180partner of Y14 and mago-like988126308813662Rat
6488614LOC100912118partner of Y14 and mago-like991087049126566Rat
1560404MGC116197similar to RIKEN cDNA 1700001E04991284169143200Rat
1592341Vom2r-ps141vomeronasal 2 receptor, pseudogene 141991637439164642Rat
1588571Vom2r79vomeronasal 2 receptor, 79992144299263050Rat
1626052Vom2r-ps140vomeronasal 2 receptor, pseudogene 140993188449332098Rat
1359214Adgre1adhesion G protein-coupled receptor E1994318889585883Rat
9391503LOC103690497U1 small nuclear ribonucleoprotein C pseudogene994748689476392Rat
7651541LOC102549477heat shock 70 kDa protein 14-like995411179557504Rat
1593501LOC689363similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)996056059608368Rat
3951Vav1vav guanine nucleotide exchange factor 1996175519675167Rat
9213679LOC103693193uncharacterized LOC103693193996633609669186Rat
2322080Sh2d3aSH2 domain containing 3A996789299688387Rat
621145Trip10thyroid hormone receptor interactor 10996892149702353Rat
735149Gpr108G protein-coupled receptor 108997043009714767Rat
2232C3complement C3997211379747084Rat
1588572Tnfsf14TNF superfamily member 14997613639765461Rat
1588573Cd70Cd70 molecule998425859845728Rat
1588543Brcc3BRCA1/BRCA2-containing complex, subunit 3998633809865920Rat
727974Tnfsf9TNF superfamily member 9999099429912276Rat
11515732LOC108351881uncharacterized LOC108351881999536679963684Rat
619730Tubb4atubulin, beta 4A class IVa999610209968420Rat
1590869Dennd1cDENN domain containing 1C999760159982349Rat
1565035Crb3crumbs cell polarity complex component 3999825299986896Rat
1588586Slc25a23solute carrier family 25 member 239998798810003599Rat
1588585Slc25a41solute carrier family 25, member 4191000481110012539Rat
621828KhsrpKH-type splicing regulatory protein91001379510023670Rat
1359646Gtf2f1general transcription factor IIF subunit 191003280610042392Rat
3432Pspnpersephin91004475610045314Rat
1598126Alkbh7alkB homolog 791004537510047507Rat
1588583Clppcaseinolytic mitochondrial matrix peptidase proteolytic subunit91004871510056068Rat
1588582Acer1alkaline ceramidase 191006197810093588Rat
1588581Mllt1MLLT1, super elongation complex subunit91011038910155305Rat
1595856LOC316124similar to gonadotropin-regulated long chain acyl-CoA synthetase91015874510188013Rat
1588580Acsbg2acyl-CoA synthetase bubblegum family member 291017231710203550Rat
1589605LOC501280similar to myosin regulatory light chain-like91020803210208950Rat
1588579Rfx2regulatory factor X291021619410283467Rat
1595447Prr22proline rich 2291028675510289340Rat
1563228Dus3ldihydrouridine synthase 3-like91028944010294213Rat
621494Nrtnneurturin91029988110306599Rat
1588473LOC367454similar to Alpha-(1,3)-fucosyltransferase (Galactoside 3-L-fucosyltransferase) (Fucosyltransferase 6) (FUCT-VI)91030905010318899Rat
1303292Ndufa11NADH:ubiquinone oxidoreductase subunit A1191033410410338163Rat
1303340Vmacvimentin-type intermediate filament associated coiled-coil protein91033826010341903Rat
1589604Ranbp3RAN binding protein 391034419010381415Rat
1594167Catsperdcation channel sperm associated auxiliary subunit delta91039030710428666Rat
621598Lonp1lon peptidase 1, mitochondrial91042885310441180Rat
62085Rpl36ribosomal protein L3691044122810441981Rat
1588578Micos13mitochondrial contact site and cristae organizing system subunit 1391044656710449566Rat
620613Safbscaffold attachment factor B91045021610471174Rat
1588577Safb2scaffold attachment factor B291047161810492775Rat
9685200TincrTINCR ubiquitin domain containing91049929010501522Rat
7515302LOC102548161uncharacterized LOC10254816191050770610513607Rat
1563631Znrf4zinc and ring finger 491053534010536528Rat
3452Ptprsprotein tyrosine phosphatase, receptor type, S91058536010646205Rat
1588576Kdm4blysine demethylase 4B91065603510734127Rat
6576126Trnak-cuutransfer RNA lysine (anticodon CUU)91068136310681435Rat
11473325Trnak-cuu11transfer RNA lysine (anticodon CUU) 1191068136310681435Rat
2323707LOC100362987ribosomal protein S27-like91073752410737845Rat
1595855Uhrf1ubiquitin-like with PHD and ring finger domains 191073821110758403Rat
1591748Arrdc5arrestin domain containing 591076011310766199Rat
1595854Plin3perilipin 391076973910781659Rat
1590868Ticam1toll-like receptor adaptor molecule 191078018510790280Rat
1561112Fem1afem-1 homolog A91079893410801140Rat
1591762LOC680438hypothetical protein LOC68043891080197710805676Rat
2325434Mir7bmicroRNA 7b91081243210812541Rat
7534526LOC10255597160S ribosomal protein L35-like91082672010827122Rat
9462719LOC103693194uncharacterized LOC10369319491084177710846432Rat
1588575Dpp9dipeptidyl peptidase 991084649310882560Rat
1589603Mydgfmyeloid-derived growth factor91088552110892744Rat
1588574Tnfaip8l1TNF alpha induced protein 8 like 191089494910905647Rat
69278Sema6bsemaphorin 6B91093427310951252Rat
1359464Lrg1leucine-rich alpha-2-glycoprotein 191095242410954664Rat
1589602Plin5perilipin 591095601310961782Rat
1590867Plin4perilipin 491096349410972360Rat
621013Hdgfl2HDGF like 291097234210991938Rat
1590866Ubxn6UBX domain protein 691099551611000643Rat
1590865Chaf1achromatin assembly factor 1 subunit A91100086911027631Rat
708456Sh3gl1SH3 domain containing GRB2 like 1, endophilin A291103184711055285Rat
1589335MpndMPN domain containing91105537011061611Rat
1566020Stap2signal transducing adaptor family member 291106460511070138Rat
1583850Fsd1fibronectin type III and SPRY domain containing 191107667011080190Rat
1590885Shdsrc homology 2 domain-containing transforming protein D91109004811098813Rat
1589601Yju2YJU2 splicing factor homolog91109891411108806Rat
1589467Ebi3Epstein-Barr virus induced 391111087411114843Rat
2324265LOC10036269340S ribosomal protein S21-like91111632611117846Rat
7694240LOC102555289zinc finger protein 709-like91112387711151368Rat
628680Uxs1UDP-glucuronate decarboxylase 191116500611240329Rat
6490497LOC10091182140S ribosomal protein S8-like91122941211230427Rat
11452099LOC108351882glyceraldehyde-3-phosphate dehydrogenase pseudogene91128671811287716Rat
11404703LOC10835198860S ribosomal protein L35 pseudogene91131782311319024Rat
7584379LOC10255611440S ribosomal protein S8-like91132372611329935Rat
1587799LOC685976similar to RalA binding protein 191158994011692984Rat
9270263LOC103693196uncharacterized LOC10369319691160634911607726Rat
7692210LOC102546625uncharacterized LOC10254662591160814211649050Rat
7685759LOC102546395N-alpha-acetyltransferase 11-like91165472911655799Rat
7604654LOC102556486thioredoxin-like protein 4A-like91165587811656089Rat
9266857LOC103693195ralA-binding protein 1-like91168990311700817Rat
7734302LOC102556298rho GTPase-activating protein 20-like91169669411733466Rat
7653649LOC102546816uncharacterized LOC10254681691177886211785367Rat
11436655LOC108351883uncharacterized LOC10835188391196601911971471Rat
11474099LOC108351884uncharacterized LOC10835188491198458811995363Rat
6488061LOC100912261protein FAM64A-like91200133012002079Rat
1585239LOC688769similar to Reticulocalbin-1 precursor91210096112102298Rat
6486900LOC100912424partner of Y14 and mago-like91212610812127420Rat
7540380LOC102549438partner of Y14 and mago-like91212802112130001Rat
9166489LOC103693202uncharacterized LOC10369320291224052412242555Rat
6486683LOC100912496reticulocalbin-1-like91229509812296215Rat
7577758LOC102550776reticulocalbin-1-like91232538512336491Rat
1591345LOC685668hypothetical protein LOC68566891234194012352007Rat
9403739LOC103693203uncharacterized LOC10369320391238770312388481Rat
1590229LOC685739similar to Reticulocalbin-1 precursor91240613512407439Rat
1594725LOC690533similar to Reticulocalbin-1 precursor91240883112410774Rat
1588537LOC360998hypothetical LOC36099891241512112429048Rat
11396250LOC108351885uncharacterized LOC10835188591247078312482984Rat
7502056LOC102550047uncharacterized LOC10255004791252328512524646Rat
11463843LOC108348336uncharacterized LOC10834833691258099212582574Rat
1591714Dazldeleted in azoospermia-like91263398312651017Rat
1563347Rftn1raftlin lipid raft linker 191274088512942358Rat
1584839LOC679702similar to potassium channel, subfamily K, member 1691300158713005602Rat
621070Kif6kinesin family member 691301697313311971Rat
11398786LOC108351886uncharacterized LOC10835188691313952713162845Rat
1306128Daam2dishevelled associated activator of morphogenesis 291344488313493154Rat
1308471Mocs1molybdenum cofactor synthesis 191349370513513972Rat
11484729LOC108351887uncharacterized LOC10835188791359827913624912Rat
6494554LOC10091112660S ribosomal protein L5-like91361394613615661Rat
11465303LOC108351888uncharacterized LOC10835188891368402813703212Rat
7624478LOC102551129uncharacterized LOC10255112991376801713780495Rat
2322726LOC100360123antigenic determinant of rec-A protein-like91378150513782672Rat
7650881LOC102547352uncharacterized LOC10254735291383044313831747Rat
1311831Lrfn2leucine rich repeat and fibronectin type III domain containing 291384575614015360Rat
11390241LOC108351889uncharacterized LOC10835188991390074413920361Rat
7683517LOC102547709uncharacterized LOC10254770991420754814222528Rat
7706024LOC102547840uncharacterized LOC10254784091438154314387546Rat
7570521LOC102548200uncharacterized LOC10254820091441125314414716Rat
1587368Unc5clunc-5 family C-terminal like91449408014510302Rat
1594018Tspo2translocator protein 291451037814514609Rat
1308727Apobec2apolipoprotein B mRNA editing enzyme catalytic subunit 291452921814542731Rat
1308299Oard1O-acyl-ADP-ribose deacylase 191454295714551519Rat
70976Nfyanuclear transcription factor Y subunit alpha91455175214577002Rat
1565175Treml1triggering receptor expressed on myeloid cells-like 191459717214603622Rat
1309841Trem2triggering receptor expressed on myeloid cells 291461154114618076Rat
7629065LOC102548435uncharacterized LOC10254843591462873114636577Rat
1307182RGD1307182similar to RIKEN cDNA B430306N03 gene91464542914654376Rat
1587039Treml2triggering receptor expressed on myeloid cells-like 291465996714668313Rat
1587021Treml4triggering receptor expressed on myeloid cells-like 491466869114707122Rat
1305477Trem3triggering receptor expressed on myeloid cells 391471393514725945Rat
1309467Trem1triggering receptor expressed on myeloid cells 191472788714743371Rat
1311406Ncr2natural cytotoxicity triggering receptor 291477949614787872Rat
9097022LOC103693209natural cytotoxicity triggering receptor 2-like91479451514798209Rat
1585869LOC680920similar to natural cytotoxicity triggering receptor 291485076314864999Rat
1565959RGD1565959RGD156595991488324114896662Rat
1585834LOC680955hypothetical protein LOC68095591490486714906407Rat
7594246LOC102554116uncharacterized LOC10255411691504222815047408Rat
1311386Foxp4forkhead box P491506837815124962Rat
1560271MdfiMyoD family inhibitor91516611815184469Rat
1309583Tfebtranscription factor EB91520814115264101Rat
7501089LOC102554220spidroin-1-like91524951515264452Rat
3943Pgcprogastricsin91526669915274917Rat
7710987LOC102554309uncharacterized LOC10255430991527100815274508Rat
1310226Frs3fibroblast growth factor receptor substrate 391529779415306850Rat
1563979Prickle4prickle planar cell polarity protein 491530690115313047Rat
1583567Tomm6translocase of outer mitochondrial membrane 691531334615314872Rat
1310513Usp49ubiquitin specific peptidase 4991531487515375365Rat
9135511LOC103690499cAMP-dependent protein kinase inhibitor gamma pseudogene91534117315341822Rat
1306415Med20mediator complex subunit 2091537937915393131Rat
727959Byslbystin-like91539346115403212Rat
2293Ccnd3cyclin D391540481615410905Rat
9302589LOC103690500uncharacterized LOC10369050091550926615511413Rat
1308423Taf8TATA-box binding protein associated factor 891551304815532992Rat
1561662RGD1561662similar to AI661453 protein91554546015582567Rat
6485345LOC100912849uncharacterized LOC10091284991558016615604282Rat
1308712Guca1aguanylate cyclase activator 1A91560980415620030Rat
1308191Guca1bguanylate cyclase activator 1B91562108315629017Rat
1311516Mrps10mitochondrial ribosomal protein S1091563742715651154Rat
1307167Trerf1transcriptional regulating factor 191565323015881695Rat
1593237Ubr2ubiquitin protein ligase E3 component n-recognin 291600305816080152Rat
3549Prph2peripherin 291608593316386176Rat
6492882LOC100911489uncharacterized LOC10091148991613706116140650Rat
11441749LOC108351890uncharacterized LOC10835189091633883216339464Rat
1306756Tbcctubulin folding cofactor C91640518716406338Rat
1305680BicralBRD4 interacting chromatin remodeling complex associated protein like91640657716495751Rat
1308469Rpl7l1ribosomal protein L7-like 191650847716516502Rat
1596723LOC681367hypothetical protein LOC68136791651837416519474Rat
621388Ptcrapre T-cell antigen receptor alpha91652897016539383Rat
1597709Cnpy3canopy FGF signaling regulator 391654371516558441Rat
2719Gnmtglycine N-methyltransferase91656527416568626Rat
621637Pex6peroxisomal biogenesis factor 691656874316580900Rat
1306666Ppp2r5dprotein phosphatase 2, regulatory subunit B', delta91658099516610425Rat
1597751Mea1male-enhanced antigen 191661031216614153Rat
1307105Klhdc3kelch domain containing 391661242916618761Rat
2321693Rrp36ribosomal RNA processing 3691661885316627128Rat
1587048Cul7cullin 791662949116643527Rat
1307147Mrpl2mitochondrial ribosomal protein L291664362116647394Rat
1306555Klc4kinesin light chain 491664757716661463Rat
1310472Ptk7protein tyrosine kinase 791666258816729888Rat
1559787Srfserum response factor91673763716747226Rat
1562008Cul9cullin 991674744916844033Rat
68440Rps19l2ribosomal protein S19-like291680228016807982Rat
6498788LOC10091033640S ribosomal protein S19-like91680228016808037Rat
620382Dnph12'-deoxynucleoside 5'-phosphate N-hydrolase 191684576416848514Rat
1559518Ttbk1tau tubulin kinase 191686230516899399Rat
621699Slc22a7solute carrier family 22 member 791692532116931119Rat
1565018Crip3cysteine-rich protein 391693186216934714Rat
1583221Zfp318zinc finger protein 31891694781816979131Rat
1306696Abcc10ATP binding cassette subfamily C member 1091704135117061263Rat
1309143Dlk2delta like non-canonical Notch ligand 291706118717065600Rat
1308708Tjap1tight junction associated protein 191708645217110770Rat
1561390Lrrc73leucine rich repeat containing 7391711117617115249Rat
1308185Yipf3Yip1 domain family, member 391711530817120659Rat
1309689Polr1cRNA polymerase I and III subunit C91712075917124871Rat
1311522Xpo5exportin 591712520117163170Rat
1309893PolhDNA polymerase eta91716335417198006Rat
9295718LOC103690509activated RNA polymerase II transcriptional coactivator p15 pseudogene91718715417187865Rat
1306367Gtpbp2GTP binding protein 291719895717208456Rat
2306314Rps2-ps6ribosomal protein S2, pseudogene 691721172017212642Rat
1309175Mad2l1bpMAD2L1 binding protein91721714117221465Rat
1310693Rsph9radial spoke head component 991722458917245093Rat
735229Mrps18amitochondrial ribosomal protein S18A91723835417254845Rat
11382532LOC108351891uncharacterized LOC10835189191732670917332370Rat
619991Vegfavascular endothelial growth factor A91734034117355681Rat
7526556LOC102550162uncharacterized LOC10255016291748826717520119Rat
11456684LOC10835198940S ribosomal protein S29 pseudogene91759330517593570Rat
7671069LOC102550363uncharacterized LOC10255036391762375917645063Rat
9095701LOC103690501uncharacterized LOC10369050191766355517667261Rat
1306240Mrpl14mitochondrial ribosomal protein L1491768762217698591Rat
1305862Tmem63btransmembrane protein 63B91769869717725479Rat
1302946Capn11calpain 1191772884517750357Rat
11426996Mymxmyomixer, myoblast fusion factor91778139717783074Rat
61899Slc29a1solute carrier family 29 member 191778446817799008Rat
1303075Hsp90ab1heat shock protein 90 alpha family class B member 191781779117823163Rat
1565318Slc35b2solute carrier family 35 member B291782339917827032Rat
735070NfkbieNFKB inhibitor epsilon91782840517835240Rat
1562074Tmem151btransmembrane protein 151B91784141017846535Rat
1305744Tcte1t-complex-associated testis expressed 191784786617867276Rat
1310617Aars2alanyl-tRNA synthetase 2, mitochondrial91786930117881762Rat
11376343LOC108351892uncharacterized LOC10835189291787116417873333Rat
631367Spats1spermatogenesis associated, serine-rich 191791195017947101Rat
9287229LOC103690502Friend virus susceptibility protein 1-like91794002617949470Rat
70892Cdc5lcell division cycle 5-like91794976417988514Rat
9470607LOC103693206uncharacterized LOC10369320691795735917959842Rat
11470506LOC108351893uncharacterized LOC10835189391798834117993346Rat
7624959LOC102551267paired box protein Pax-7-like91800102118001631Rat
11428296LOC108351990uncharacterized LOC10835199091804815618099787Rat
7746747LOC102551517uncharacterized LOC10255151791820682018212009Rat
1596995LOC503243similar to CG8435-PA91821493918216696Rat
1591316Supt3hSPT3 homolog, SAGA and STAGA complex component91824956518604814Rat
9113792LOC103693207uncharacterized LOC10369320791848866018489106Rat
1590246Znrd1aszinc ribbon domain containing 1 antisense91848928418490450Rat
2282Runx2RUNX family transcription factor 291856474318773092Rat
9231519LOC103690503uncharacterized LOC10369050391881841718820965Rat
11432264LOC108351894uncharacterized LOC10835189491910034019110408Rat
620659Clic5chloride intracellular channel 591912167619372673Rat
11477544LOC108351895uncharacterized LOC10835189591938062419386356Rat
7587989LOC102555783uncharacterized LOC10255578391943632319440559Rat
1308689Enpp4ectonucleotide pyrophosphatase/phosphodiesterase 491944680719457946Rat
1359199Enpp5ectonucleotide pyrophosphatase/phosphodiesterase family member 591946927619476684Rat
69198Rcan2regulator of calcineurin 291951856819749145Rat
1307471Cyp39a1cytochrome P450, family 39, subfamily a, polypeptide 191980407919880346Rat
620787Slc25a27solute carrier family 25, member 2791988046819907506Rat
11380309LOC108351896uncharacterized LOC10835189691991294819916826Rat
1305956Tdrd6tudor domain containing 691991761319932888Rat
1310734Pla2g7phospholipase A2 group VII91993575419978013Rat
1560151Ankrd66ankyrin repeat domain 6691997722920014747Rat
3080Mep1ameprin A subunit alpha92004816320077678Rat
621679Adgrf5adhesion G protein-coupled receptor F592009112120195706Rat
7594196LOC102549865uncharacterized LOC10254986592027034120271138Rat
1310285Adgrf1adhesion G protein-coupled receptor F192034373020378686Rat
9348743LOC103690250uncharacterized LOC10369025092041816620444418Rat
11412450LOC108351897ATP synthase subunit g, mitochondrial pseudogene92042485520428516Rat
7681836LOC102550299ATP synthase subunit g, mitochondrial-like92042711020428481Rat
11520739LOC108351898uncharacterized LOC10835189892052585320537686Rat
1307308Tnfrsf21TNF receptor superfamily member 2192054615920621051Rat
11503016LOC108351899uncharacterized LOC10835189992072371120730180Rat
727803Cd2apCD2-associated protein92079468020858438Rat
1306718Adgrf2adhesion G protein-coupled receptor F292089894320948284Rat
1565216Adgrf4adhesion G protein-coupled receptor F492095124920982493Rat
727869Opn5opsin 592104545721092517Rat
1563020Ptchd4patched domain containing 492113715021339398Rat
7567944LOC102551364uncharacterized LOC10255136492146204921498590Rat
11477895LOC108352019uncharacterized LOC10835201992182755521831440Rat
1333298Olr1828-psolfactory receptor pseudogene 182892190111721901594Rat
11432436LOC10835199160S ribosomal protein L21 pseudogene92286156122862066Rat
9318008LOC103690513G-protein coupled receptor 39-like92308503423103800Rat
7609462LOC102548131uncharacterized LOC10254813192321906623233529Rat
7527318LOC102548541uncharacterized LOC10254854192329819723330156Rat
1587662Mmutmethylmalonyl-CoA mutase92332393423352144Rat
1359451Cenpqcentromere protein Q92335227123368774Rat
7676281LOC10255358140S ribosomal protein S12-like92336271723363832Rat
1587643Glyatl3glycine-N-acyltransferase-like 392337261423390764Rat
7735571LOC102548627non-histone chromosomal protein HMG-14-like92337657423377220Rat
1588829LOC688459hypothetical protein LOC68845992342065423424832Rat
1564244Cyp2ac1cytochrome P450, family 2, subfamily ac, polypeptide 192343156123444219Rat
61871RhagRh-associated glycoprotein92346519023493081Rat
621653Crisp2cysteine-rich secretory protein 292350322323527502Rat
9450374LOC103690514exocrine gland-secreted peptide 1-like92354068523545722Rat
7503936LOC102553880uncharacterized LOC10255388092355934423563421Rat
11390506LOC10835199360S ribosomal protein L36a-like92357156723584479Rat
11433453LOC108351994exocrine gland-secreted peptide 1-like92359696423601370Rat
7504294LOC102553506uncharacterized LOC10255350692371413923721787Rat
1586485LOC688615similar to ubiquinol-cytochrome c reductase binding protein92396869223969183Rat
619846Crisp3cysteine-rich secretory protein 392404740524088066Rat
1306627Pgk2phosphoglycerate kinase 292409577424097340Rat
7615067LOC102548813uncharacterized LOC10254881392415944024166762Rat
7578564LOC102557398polyubiquitin 12-like92427223924272455Rat
11397802LOC108351900uncharacterized LOC10835190092427786624284992Rat
1590757Crisp1cysteine-rich secretory protein 192435657724383679Rat
1560245Defb49defensin beta 4992444511524451499Rat
1559758Defb18defensin beta 1892446698124467892Rat
1562466Defb16-psdefensin beta 16 pseudogene92450115124509680Rat
1565718Defb17defensin beta 1792450624624509761Rat
7726690LOC10255520960S ribosomal protein L27a-like92485318624910701Rat
1585305LOC688701similar to heterogeneous nuclear ribonucleoproteins methyltransferase-like 292493828424939476Rat
9222779LOC103690504ubiquitin-conjugating enzyme E2 N-like92499570324996086Rat
11442088LOC108351995glyceraldehyde-3-phosphate dehydrogenase-like92512752225203926Rat
1304864Tfap2dtranscription factor AP-2 delta92530487625365151Rat
1306321Tfap2btranscription factor AP-2 beta92541066925440568Rat
11378807LOC108351901uncharacterized LOC10835190192542118325424353Rat
9108912LOC103690505uncharacterized LOC10369050592571804425743133Rat
11385190LOC108351902uncharacterized LOC10835190292583453925871878Rat
1308476Pkhd1PKHD1 ciliary IPT domain containing fibrocystin/polyductin92616496926736704Rat
7542571LOC10254906860S ribosomal protein L19-like92663024226631182Rat
2325550Mir206microRNA 20692679176426791847Rat
9139937LOC103690506uncharacterized LOC10369050692679477426797389Rat
2325527Mir133bmicroRNA 133b92679564926795732Rat
2888Il17ainterleukin 17A92684129926844786Rat
1584090LOC688876similar to peptidyl-prolyl isomerase G (cyclophilin G)92685333426859074Rat
1311398Il17finterleukin 17F92688570226897219Rat
1305168Mcm3minichromosome maintenance complex component 392691405726932201Rat
2318314LOC100362372chaperonin containing Tcp1, subunit 7 (eta)-like92693210926935447Rat
1311710Paqr8progestin and adipoQ receptor family member 892700527027054591Rat
7567345LOC102549795uncharacterized LOC10254979592705445427068065Rat
1587365Efhc1EF-hand domain containing 192706850527107713Rat
1589151Tram2translocation associated membrane protein 292711786127192166Rat
7706003LOC102549948uncharacterized LOC10254994892721049727213259Rat
7706003LOC102549948uncharacterized LOC10254994892721341027218238Rat
7668470LOC102550014uncharacterized LOC10255001492721653227235763Rat
11382929LOC108351996heterogeneous nuclear ribonucleoprotein A3-like92728071927290196Rat
1562107RGD1562107similar to class-alpha glutathione S-transferase92731122927324452Rat
7743195LOC102550123uncharacterized LOC10255012392732558427338992Rat
1307710Tmem14atransmembrane protein 14A92733395627345612Rat
1591980Gsta3glutathione S-transferase alpha 392735749027417023Rat
2753Gsta1glutathione S-transferase alpha 192736640427381004Rat
7634096LOC102550391glutathione S-transferase alpha-3-like92736641227380999Rat
1566137RGD1566137similar to ribosomal protein L10a92738168927454055Rat
7676682LOC102550934E3 ubiquitin-protein ligase makorin-1-like92740388427405373Rat
11474512LOC108351903uncharacterized LOC10835190392741667427423053Rat
9416522LOC103693211transmembrane protein 14A-like92746587227466717Rat
1565402Gsta6glutathione S-transferase alpha 692747527327533939Rat
11461825LOC108351905enhancer of rudimentary homolog pseudogene92748367927485864Rat
1586180p53-psWistar clone pR53P1 p53 pseudogene92754336227544893Rat
1597396Khdc1KH domain containing 192754606927547769Rat
1596202Khdc1bKH domain containing 1B92755443627556770Rat
628848Kcnq5potassium voltage-gated channel subfamily Q member 592756586928141114Rat
11368267LOC108351906ferritin light chain 1 pseudogene92767797327678867Rat
11358095LOC108351907uncharacterized LOC10835190792779049827808947Rat
11415857LOC108351908uncharacterized LOC10835190892839256028407602Rat
620000Rims1regulating synaptic membrane exocytosis 192844040828973246Rat
9133770LOC103693212glyceraldehyde-3-phosphate dehydrogenase pseudogene92887298628876150Rat
1594773LOC689279similar to heterogeneous nuclear ribonucleoprotein C92917777229178662Rat
1309049RGD1309049similar to RIKEN cDNA 4933415F2392933628829337922Rat
1586777LOC684715similar to Small nuclear ribonucleoprotein Sm D1 (snRNP core protein D1) (Sm-D1) (Sm-D autoantigen)92936146329362114Rat
2325588Mir30amicroRNA 30a92954263529542705Rat
2325587Mir30c2microRNA 30c-292956237629562459Rat
11481702LOC108351909E3 ubiquitin-protein ligase RBX1 pseudogene92957155629574977Rat
1308498Ogfrl1opioid growth factor receptor-like 192963417829647903Rat
11380853LOC108351910uncharacterized LOC10835191092965721029678226Rat
11497442LOC10835202060S ribosomal protein L23a pseudogene92970271929703231Rat
620903B3gat2beta-1,3-glucuronyltransferase 292998407730068649Rat
1585595Smap1small ArfGAP 193006888830161753Rat
1588998Sdhaf4succinate dehydrogenase complex assembly factor 493024326130251478Rat
1304927Fam135afamily with sequence similarity 135, member A93025505730335775Rat
9290614LOC103693213uncharacterized LOC10369321393033098030336223Rat
9413639LOC103690507uncharacterized LOC10369050793033774430343427Rat
7580017LOC102553447uncharacterized LOC10255344793036779230395850Rat
1309425Col9a1collagen type IX alpha 1 chain93041900130502307Rat
1308920Col19a1collagen type XIX alpha 1 chain93050800330864836Rat
9363755LOC103690510ADP-ribosylation factor-like protein 3 pseudogene93060633030606878Rat
708471Lmbrd1LMBR1 domain containing 193093955531038381Rat
9343111LOC103690508adhesive plaque matrix protein-like93095171330954592Rat
1591063LOC689564similar to 60S ribosomal protein L1193108419031084757Rat
2323882LOC100362897hypothetical LOC10036289793115527431156274Rat
1309703Adgrb3adhesion G protein-coupled receptor B393128062332022535Rat
7741406LOC10255370860S ribosomal protein L9-like93181117631813720Rat
11365616LOC108351997heat shock protein HSP 90-beta-like93262522032659901Rat
1588763LOC689725similar to chromosome 9 open reading frame 7993286256032868365Rat
2318365LOC100362320hypothetical LOC10036232093292626632926573Rat
11372666LOC108352021uncharacterized LOC10835202193351035733516643Rat
7729430LOC102554152uncharacterized LOC10255415293390976733920026Rat
7637214LOC102554281uncharacterized LOC10255428193446990834486769Rat
1590775LOC501115similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)93454735534547922Rat
6489933Spata31e1SPATA31 subfamily E, member 193528942235295479Rat
1559965RGD1559965similar to WW domain binding protein 1193581278335814348Rat
1596924LOC678760similar to Dipeptidyl-peptidase 3 (Dipeptidyl-peptidase III) (DPP III) (Dipeptidyl aminopeptidase III) (Dipeptidyl arylamidase III)93632334236325209Rat
1592055LOC363208similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP)93640896136410566Rat
1588705LOC689783similar to DnaJ (Hsp40) homolog, subfamily B, member 6 isoform b93681596336816664Rat
2318113LOC100362475zinc finger protein 70693698108236981329Rat
621477Eif4g2-ps1eukaryotic translation initiation factor 4, gamma 2, pseudogene 193705682737060609Rat
1304925Phf3PHD finger protein 393707351437144027Rat
61970Ptp4a1protein tyrosine phosphatase 4A193722336337254222Rat
7648058LOC102556446uncharacterized LOC10255644693723058337233732Rat
7590823LOC102548289uncharacterized LOC10254828993725430437255976Rat
727925Lgsnlengsin, lens protein with glutamine synthetase domain93745860337490117Rat
11448578LOC108351998high mobility group protein B1-like93759023037593651Rat
11380123LOC108351911serine protease inhibitor Kazal-type 11-like93762071837638292Rat
6487654LOC100912306myotilin-like93772793437747498Rat
6487168LOC100912348myotilin-like93774903137761022Rat
1308463Imp4IMP U3 small nucleolar ribonucleoprotein 493776995937775097Rat
1304653Ccdc115coiled-coil domain containing 11593777487637778839Rat
11444069Trnae-uuc5transfer RNA glutamic acid (anticodon UUC) 593778127837781349Rat
7638136LOC102551518uncharacterized LOC10255151893778237637786656Rat
1306566Dstdystonin93790233638296961Rat
7647959LOC102551615uncharacterized LOC10255161593819005738199303Rat
1310392Bend6BEN domain containing 693829725338351312Rat
1305865Zfp451zinc finger protein 45193839546438451585Rat
11379446LOC108351912SUMO-conjugating enzyme UBC9 pseudogene93845171138453205Rat
1585173Bag2BAG cochaperone 293845648738467120Rat
1306867Rab23RAB23, member RAS oncogene family93846978438496185Rat
1585200LOC690009similar to Cofilin-2 (Cofilin, muscle isoform)93850502538505541Rat
631433Prim2DNA primase subunit 293853543538745058Rat
7609582LOC102552941uncharacterized LOC10255294193870721538711464Rat
9469496LOC103693216uncharacterized LOC10369321693872504238730326Rat
1590809LOC367240hypothetical LOC36724093876108438761873Rat
6500780LOC100910005uncharacterized LOC10091000593879988138807790Rat
1586327LOC689973similar to pigpen93889079038892367Rat
1586334LOC689966similar to zinc finger protein 62293896069838962271Rat
621738Khdrbs2KH RNA binding domain containing, signal transduction associated 293950143140008707Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
5055783RH1440001369605596605922Ratregion
5045636RH1312911969732958733158Ratregion
5077656RH139882217915476471547863Ratregion
60662D9Got4137917027681702904Ratregion
5040150RH128118217917472731747489Ratregion
60663D9Got5120917679731768092Ratregion
5046012RH131508214917802511780464Ratregion
1641215D9Cebr3178917807391780916Ratregion
5045328RH131115215917830071783221Ratregion
5503272UniSTS:237662129918787351878863Ratregion
37468D9Rat162233919078341908054Ratregion
60661D9Got3292921503782150669Ratregion
60667D9Got6172921505022150674Ratregion
5052551U05252157922743282274484Ratregion
5077456RH139767199922752272275425Ratregion
60668D9Got7192922802752280466Ratregion
60669D9Got8286926576102657895Ratregion
35733D9Rat45158926641412664304Ratregion
5507005fj02h10.x1332927452332745564Ratregion
60659D9Got2151927865022786652Ratregion
35695D9Rat44176928809772881145Ratregion
60670D9Got9147931730563173200Ratregion
41272D9Rat139137933078833308009Ratregion
34264D9Mgh5150933097543309921Ratregion
5055249RH143692133933345123334644Ratregion
5031956AU046569252936410383641288Ratregion
5031526AU048038185937253783725562Ratregion
5041724RH129022183941544424154624Ratregion
5049384RH133450189943240734324261Ratregion
36438D9Rat43140944013954401526Ratregion
5041724RH129022183946228524623034Ratregion
5049384RH133450189949311114931299Ratregion
5500450AW184596286952166795216964Ratregion
60643D9Got10173953073005307471Ratregion
5506491D11S41431536953696475371182Ratregion
60827D9Wox23160957240915724254Ratregion
60826D9Wox22152957240925724247Ratregion
1637006D9Got245229959760455976273Ratregion
5090429AU049745282960227676023048Ratregion
41490D9Rat138167963263856326529Ratregion
5054461RH143237253964755516475799Ratregion
5028637RH125689201964760996476298Ratregion
5049430RH133476180964770456477224Ratregion
5087805D5Wsu145e276964771586477435Ratregion
60825D9Wox20107965254086525517Ratregion
1634267D9Got231267965397836540050Ratregion
5505506D4S33301671968050786806748Ratregion
62508D9Uia1187970509137051053Ratregion
2325892D6Hmgc3246979514187951643Ratregion
5072624RH136957217986243038624516Ratregion
5066842AU048118196986283628628619Ratregion
5503224UniSTS:237297319987739858774299Ratregion
5066576AU048275196989243388924514Ratregion
5077750RH139937189994320129432200Ratregion
5079836RH141231219996170849617302Ratregion
5051725RH94621149996175739617721Ratregion
1632443D9Got1276996787899679061Ratregion
5088909AU048842138996851399685276Ratregion
5501936MARC_17747-17748:1031760580:1502997127179713218Ratregion
5045998RH131500190997144639714652Ratregion
5029383RH144584188997163669716553Ratregion
5028195D17Mit88146997198629720007Ratregion
5044612RH130704206997466909746991Ratregion
5089817AU049381278997469999747276Ratregion
5043762RH130212189998638459864033Ratregion
5068298AU047229220999017279901939Ratregion
5073150RH137268161999310549931214Ratregion
5056195RH144238106999348679934972Ratregion
5502022MARC_24021-24022:1029778648:1606999671129967717Ratregion
5027723SGC32809133999674869967618Ratregion
5072912RH137126203999682209968422Ratregion
5028595AU015179126999826039982728Ratregion
5046328RH1316890999827149983264Ratregion
5044988RH130918180999963289997580Ratregion
7206552UniSTS:54704478191000200110002781Ratregion
7206560UniSTS:54705726691001225710012522Ratregion
5055955RH14409920891001718410017391Ratregion
5505124Khsrp94191002180910022749Ratregion
5032167RH12603921791004216410042380Ratregion
5025782RH12964318991004564610045834Ratregion
5025868RH13000119791004874610048942Ratregion
5083637BI27652818891005569510055882Ratregion
5502371RH12464618791015494610155132Ratregion
5028643RH12574625091015499510155244Ratregion
60657D9Got13918491015603610156219Ratregion
5088569AU04864812291029795010298071Ratregion
5034992Nrtn10191030637110306471Ratregion
5079200RH14079419891033305910333256Ratregion
5055679RH14394022391033387710334099Ratregion
5072558RH13691818091034426010344439Ratregion
5054743RH14340017491043251810433277Ratregion
5501870MARC_16413-16414:1018631384:1091045692610457427Ratregion
5505227Safb130491045703710458340Ratregion
5501870MARC_16413-16414:1018631384:1091047935310479935Ratregion
5503268UniSTS:23766725791049098710491243Ratregion
5046956RH13205120591049248410492688Ratregion
5050358RH13401018091052508710525269Ratregion
5033593RH13939323891065546810655705Ratregion
5071622RH13518918791065607510656261Ratregion
5080270RH14148320091065689410657093Ratregion
5060360AW52513516891068543310685600Ratregion
1303360D9Got20020691070652810706733Ratregion
5055353RH14375210491073369110733794Ratregion
5075722RH13875923091075649310756722Ratregion
5051176RH13448319791078135710781553Ratregion
631290D9Wox249991086939110869489Ratregion
5502106MARC_4447-4448:966894303:118291089106010892377Ratregion
5036191D17Wsu104e23191089251310892743Ratregion
5043066RH12981218791089251810892704Ratregion
1639864D9Wox4112891095063610950763Ratregion
5071426RH13507519191095096810951158Ratregion
5079102RH14073614591096138210961526Ratregion
5048574RH13298219591097208610972280Ratregion
5080612RH14168019191099811710998692Ratregion
5051248RH13452420091099980311000266Ratregion
5052555AU04090914591100023811000382Ratregion
5080266RH14148120191100088711001087Ratregion
5072718RH13701315091105509611055245Ratregion
5037183RH9110214191107038511070525Ratregion
5050802RH13426618491108868511088868Ratregion
5042570RH12951420391109018611090388Ratregion
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5506975fc48d10.y146793815212338152589Ratregion
5030229BE09915017393819909038199262Ratregion
7206496UniSTS:546686162293834300738344628Ratregion
5055737RH14397321093841031238410521Ratregion
5071078RH13487418993841377138413959Ratregion
5053401RH14262714593841854638418690Ratregion
5062924BF39802624693844147038441715Ratregion
39024D9Rat5922593844727538447499Ratregion
5084148AI17627020493845131338451516Ratregion
5084362AI17667717693847008538470260Ratregion
5049338RH13342318493874465838744841Ratregion
5028735STS-AA00978116093896209738962256Ratregion
7205782D2S34093493934469439345627Ratregion
5067680AU04760016993969601039696175Ratregion
35164D9Rat5617694004363040043801Ratregion
37846D9Rat9424594016524040165484Ratregion
Position Markers

Peak: (D9Rat132)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2915,499,136 - 15,499,288 (+)MAPPER
Rnor_6.0917,883,799 - 17,883,946NCBI
Rnor_5.0916,772,634 - 16,772,781UniSTS
RGSC_v3.4911,099,462 - 11,099,609UniSTS
RGSC_v3.4911,099,461 - 11,099,609RGD
RGSC_v3.1911,096,784 - 11,096,931RGD
Celera913,242,291 - 13,242,438UniSTS
RH 3.4 Map978.1UniSTS
RH 3.4 Map978.1RGD
RH 2.0 Map974.1RGD
SHRSP x BN Map914.0098RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9116520166Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9129467098Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9140383872Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9140383872Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9140383872Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9145029794Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9105522293442944Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9190783415555026Rat
631533Iresp3Immunoglobin response QTL316.2blood immunoglobulin E amount (VT:0002492)serum total immunoglobulin E level (CMO:0001542)920055833309921Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9235572247355722Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9235572247355722Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9288097747375681Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9288097747880977Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9498609549986095Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9498609549986095Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9572425425692342Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RChigh CD8 T cell count to CD45RClow CD8 T cell count ratio (CMO:0001990)91086939115509311Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)91221677157216771Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)91242546357425463Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)91242546357425463Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91555490147249201Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91952048945029794Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92488509969885099Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92569234292741406Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92569237370692373Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92575432054885226Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92748603663264281Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92748603666757620Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92748615588333183Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92907507983686404Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)929075079122095297Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)929466970107878528Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93238513377385133Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93764235182642351Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93764235182642351Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross 7401255
qtl_general number of animals used: 93 F2 males 7401255
qtl_general measurement method: At 16 weeks of age animals were individually housed and given self-selection diet (protein, carbohydrate and fat diet in three separate cups); percentage of lipid intake calculated as the relative amount of calories provided by fat against total calories consumed 7401255
qtl_general software package used: multiple interval mapping (MIM) and simple interval mapping; MultiQTL software (version 2.6); ANOVA 7401255
qtl_general carbohydrate and fat intake are highly correlated 7401255
qtl_map spans from 11.1-42.3 Mb; peak at 16.5 Mb 7401255