Bmp4 (bone morphogenetic protein 4) - Rat Genome Database

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Gene: Bmp4 (bone morphogenetic protein 4) Rattus norvegicus
Analyze
Symbol: Bmp4
Name: bone morphogenetic protein 4
RGD ID: 2213
Description: Enables growth factor activity and identical protein binding activity. Involved in several processes, including lung development; positive regulation of calcium ion transmembrane transport; and positive regulation of cell differentiation. Acts upstream of or within positive regulation of ossification and positive regulation of transcription by RNA polymerase II. Located in extracellular space and vesicle. Biomarker of Barrett's esophagus; congenital diaphragmatic hernia; epilepsy; peptic esophagitis; and prolactinoma. Human ortholog(s) of this gene implicated in several diseases, including CAKUT (multiple); cleft lip; orofacial cleft 11; ossification of the posterior longitudinal ligament of spine; and syndromic microphthalmia 6. Orthologous to human BMP4 (bone morphogenetic protein 4); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; glypican signaling pathway; basal cell carcinoma pathway; INTERACTS WITH (+)-pilocarpine; (S)-nicotine; 1,1-bis(2-aminoethyl)-2-hydroxy-3-oxotriazane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: BMP-2B; BMP-4; BOMPR4A; bone morphogenetic protein 2B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81522,098,191 - 22,113,145 (-)NCBIGRCr8
mRatBN7.21519,618,538 - 19,633,494 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1519,618,542 - 19,623,306 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1522,400,667 - 22,404,237 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01523,358,675 - 23,362,245 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01521,608,597 - 21,612,175 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01520,776,060 - 20,791,013 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1520,776,054 - 20,822,740 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01524,734,987 - 24,749,935 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41522,283,171 - 22,286,757 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11522,298,892 - 22,305,718 (-)NCBI
Celera1520,029,866 - 20,033,452 (-)NCBICelera
RH 3.4 Map15185.6RGD
Cytogenetic Map15p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
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Original Reference(s)
Bmp4RatAcute Otitis Media  ISOBmp4 (Mus musculus)127284853mRNA:decreased expression:middle ear (mouse)RGD 
Bmp4RatAlzheimer's disease  ISOBmp4 (Mus musculus)10414082 RGD 
Bmp4RatAnorectal Malformations  IEP 1599527mRNA:decreased expression:hindgutRGD 
Bmp4RatAnorectal Malformations severityISOBMP4 (Homo sapiens)12798571mRNA and protein:decreased expression:rectumRGD 
Bmp4RatAnorectal Malformations  IEP 9068408mRNA:decreased expression:rectum:RGD 
Bmp4Ratatrial heart septal defect susceptibilityISOBMP4 (Homo sapiens)13442496DNA:SNP: :rs762642(human)RGD 
Bmp4RatBarrett's esophagus  IEP 8699511protein:increased expression:esophagus:RGD 
Bmp4RatBarrett's esophagus  ISOBMP4 (Homo sapiens)8699511protein:increased expression:esophagus:RGD 
Bmp4RatBrain Hypoxia-Ischemia  IEP 8699519mRNA and protein:decreased expression:brain:RGD 
Bmp4Ratbreast cancer  ISOBMP4 (Homo sapiens)1643590mRNA:increased expression:breastRGD 
Bmp4RatCAKUT susceptibilityISOBMP4 (Homo sapiens)13442498DNA:SNPs: :rs2071047 and rs17563(human)RGD 
Bmp4RatCAKUT2  ISOBMP4 (Homo sapiens)13446406DNA:mutations:cds: c.485G> A (p.R162Q), c.1167T> C(human) RGD 
Bmp4Ratcalcinosis  ISOBMP4 (Homo sapiens)9068449protein:increased expression:dermis:RGD 
Bmp4RatCardiomegaly  ISOBmp4 (Mus musculus)8847123protein:increased expression:heart:RGD 
Bmp4Ratcartilage disease treatmentISOBMP4 (Homo sapiens)8699518 RGD 
Bmp4RatCartilage Fractures treatmentISOBMP4 (Homo sapiens)9068397 RGD 
Bmp4RatCHARGE syndrome  ISOBmp4 (Mus musculus)9068442mRNA:altered localization:brain:RGD 
Bmp4RatChoroidal Neovascularization  ISOBmp4 (Mus musculus)8699493 RGD 
Bmp4RatChoroidal Neovascularization  ISOBmp4 (Mus musculus)8699501 RGD 
Bmp4Ratcleft lip susceptibilityISOBMP4 (Homo sapiens)13442497DNA:SNP: : rs17563 (p.V152A)(human)RGD 
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1 to 13 of 13 rows
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Original Reference(s)
Bmp4Ratamenorrhea  ISOBMP4 (Homo sapiens)8554872ClinVar Annotator: match by term: Primary amenorrheaClinVarPMID:21681106
Bmp4RatAPLASIA/HYPOPLASIA INVOLVING BONES OF THE LOWER LIMBS  ISOBMP4 (Homo sapiens)8554872ClinVar Annotator: match by term: Aplasia/hypoplasia involving bones of the lower limbsClinVarPMID:25741868
Bmp4Ratcleft lip  ISOBMP4 (Homo sapiens)8554872ClinVar Annotator: match by term: Cleft Lip +/- Cleft Palate and Autosomal DominantClinVarPMID:12404109 more ...
Bmp4RatDOPA-responsive dystonia  ISOBMP4 (Homo sapiens)8554872ClinVar Annotator: match by term: Dystonia 5ClinVarPMID:17111153 more ...
Bmp4Ratgenetic disease  ISOBMP4 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:19249007 more ...
Bmp4Rathereditary spastic paraplegia 28  ISOBMP4 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary spastic paraplegia 28ClinVarPMID:28492532
Bmp4RatKapur Toriello Syndrome  ISOBMP4 (Homo sapiens)8554872ClinVar Annotator: match by term: Kapur-Toriello syndromeClinVarPMID:25741868
Bmp4Ratorofacial cleft  ISOBMP4 (Homo sapiens)8554872ClinVar Annotator: match by term: Orofacial cleftClinVarPMID:25741868
Bmp4Ratorofacial cleft 11  ISOBMP4 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:12404109 more ...
Bmp4RatPeters anomaly  ISOBMP4 (Homo sapiens)8554872ClinVar Annotator: match by term: Irido-corneo-trabecular dysgenesisClinVarPMID:25741868
Bmp4Ratsyndromic microphthalmia  ISOBMP4 (Homo sapiens)8554872ClinVar Annotator: match by term: Syndromic Microphthalmia and DominantClinVarPMID:25741868 and PMID:28492532
Bmp4Ratsyndromic microphthalmia 6  ISOBMP4 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:12404109 more ...
Bmp4Rattooth agenesis  ISOBMP4 (Homo sapiens)8554872ClinVar Annotator: match by term: Tooth agenesisClinVar 
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Original Reference(s)
Bmp4RatACTH-secreting pituitary adenoma  ISOBMP4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16195406
Bmp4RatBreast Neoplasms  ISOBMP4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:23180569
Bmp4RatColorectal Neoplasms  ISOBMP4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19011631
Bmp4RatDiaphragmatic Hernia  ISOBMP4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18280291
Bmp4Ratorofacial cleft 11  ISOBMP4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Bmp4Ratosteoarthritis  ISOBMP4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20008919
Bmp4Ratosteoporosis  ISOBMP4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:36453845
Bmp4Ratprolactinoma  ISOBMP4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16809920
Bmp4Ratpsoriatic arthritis  ISOBMP4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20008919
Bmp4Ratrheumatoid arthritis  ISOBMP4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20008919
Bmp4Ratsyndromic microphthalmia 6  ISOBMP4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Bmp4RatVitamin A Deficiency  ISOBMP4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16120438
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Original Reference(s)
Bmp4Ratorofacial cleft 11  ISOBMP4 (Homo sapiens)7240710 OMIM 
Bmp4Ratsyndromic microphthalmia 6  ISOBMP4 (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Bmp4Rat(+)-pilocarpine decreases expressionEXP 6480464Pilocarpine results in decreased expression of BMP4 mRNACTDPMID:17971868
Bmp4Rat(+)-pilocarpine increases expressionEXP 6480464Pilocarpine results in increased expression of BMP4 mRNACTDPMID:17971868
Bmp4Rat(-)-epigallocatechin 3-gallate multiple interactionsISOBMP4 (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of BMP4 mRNACTDPMID:22079256
Bmp4Rat(S)-amphetamine multiple interactionsISOBmp4 (Mus musculus)6480464SOD1 inhibits the reaction [Dextroamphetamine results in decreased expression of BMP4 mRNA]CTDPMID:12205029
Bmp4Rat(S)-amphetamine decreases expressionISOBmp4 (Mus musculus)6480464Dextroamphetamine results in decreased expression of BMP4 mRNACTDPMID:12205029
Bmp4Rat(S)-nicotine decreases expressionEXP 6480464Nicotine results in decreased expression of BMP4 mRNACTDPMID:20339300
Bmp4Rat1,1-bis(2-aminoethyl)-2-hydroxy-3-oxotriazane increases expressionEXP 64804642 and 2'-(hydroxynitrosohydrazono)bis-ethanamine results in increased expression of BMP4 mRNACTDPMID:15991191
Bmp4Rat1,2-dimethylhydrazine multiple interactionsISOBmp4 (Mus musculus)6480464Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of BMP4 mRNA]CTDPMID:22206623
Bmp4Rat1,2-dimethylhydrazine increases expressionISOBmp4 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of BMP4 mRNACTDPMID:22206623
Bmp4Rat1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine increases expressionEXP 6480464chlorcyclizine results in increased expression of BMP4 mRNACTDPMID:21058326
Bmp4Rat17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of BMP4 mRNACTDPMID:16551644
Bmp4Rat17beta-estradiol affects expressionISOBMP4 (Homo sapiens)6480464Estradiol affects the expression of BMP4 mRNACTDPMID:14699072 and PMID:22574217
Bmp4Rat17beta-estradiol increases expressionISOBMP4 (Homo sapiens)6480464Estradiol results in increased expression of BMP4 mRNACTDPMID:31646340
Bmp4Rat17beta-estradiol decreases expressionISOBMP4 (Homo sapiens)6480464Estradiol results in decreased expression of BMP4 mRNACTDPMID:26921789
Bmp4Rat17beta-estradiol multiple interactionsEXP 6480464[BMP4 protein results in increased expression of CYP19A1 mRNA] promotes the reaction [FSHB protein results in increased abundance of Estradiol] and BMP4 protein inhibits the reaction [IGF1 protein promotes the reaction [FSHB protein results in increased abundance of Estradiol]]CTDPMID:22067323
Bmp4Rat17beta-estradiol decreases expressionISOBmp4 (Mus musculus)6480464Estradiol results in decreased expression of BMP4 mRNACTDPMID:23144751
Bmp4Rat17beta-estradiol multiple interactionsISOBMP4 (Homo sapiens)6480464[Estradiol binds to ESR2 protein] which results in increased expression of BMP4 mRNACTDPMID:20404318
Bmp4Rat2,3,7,8-tetrachlorodibenzodioxine decreases secretionISOBmp4 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased secretion of BMP4 proteinCTDPMID:26572662
Bmp4Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of BMP4 mRNACTDPMID:33387578
Bmp4Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOBmp4 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of BMP4 mRNACTDPMID:18691609 more ...

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Biological Process
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Original Reference(s)
Bmp4Ratameloblast differentiation acts_upstream_ofISOBmp4 (Mus musculus)1624291 PMID:15525533RGDPMID:15525533
Bmp4Ratameloblast differentiation acts_upstream_ofIEAUniProtKB:P21275 and ensembl:ENSMUSP000000737201600115GO_REF:0000107EnsemblGO_REF:0000107
Bmp4Ratanatomical structure formation involved in morphogenesis acts_upstream_of_or_withinISOBmp4 (Mus musculus)1624291MGI:104327 PMID:16916379RGDPMID:16916379
Bmp4Ratanatomical structure formation involved in morphogenesis acts_upstream_of_or_withinIEAUniProtKB:P21275 and ensembl:ENSMUSP000000737201600115GO_REF:0000107EnsemblGO_REF:0000107
Bmp4Ratanatomical structure regression  IEP 8998993 RGD 
Bmp4Ratangiogenesis acts_upstream_of_or_withinISOBmp4 (Mus musculus)1624291MGI:3042751 PMID:15070745RGDPMID:15070745
Bmp4Ratangiogenesis acts_upstream_of_or_withinIEAUniProtKB:P21275 and ensembl:ENSMUSP000000737201600115GO_REF:0000107EnsemblGO_REF:0000107
Bmp4Ratanterior/posterior axis specification acts_upstream_of_or_withinISOBmp4 (Mus musculus)1624291MGI:104903 PMID:10964473RGDPMID:10964473
Bmp4Ratanterior/posterior axis specification acts_upstream_of_or_withinIEAUniProtKB:P21275 and ensembl:ENSMUSP000000737201600115GO_REF:0000107EnsemblGO_REF:0000107
Bmp4Rataortic valve morphogenesis involved_inIEAUniProtKB:P21275 and ensembl:ENSMUSP000000737201600115GO_REF:0000107EnsemblGO_REF:0000107
Bmp4Rataortic valve morphogenesis involved_inISOBmp4 (Mus musculus)1624291 PMID:15070745 and PMID:18924235RGDPMID:15070745 and PMID:18924235
Bmp4Ratapoptotic process involved in endocardial cushion morphogenesis NOT|involved_inISOBmp4 (Mus musculus)1624291 PMID:18924235RGDPMID:18924235
Bmp4Ratblood vessel development acts_upstream_of_or_withinIEAUniProtKB:P21275 and ensembl:ENSMUSP000000737201600115GO_REF:0000107EnsemblGO_REF:0000107
Bmp4Ratblood vessel development acts_upstream_of_or_withinISOBmp4 (Mus musculus)1624291 PMID:17881493RGDPMID:17881493
Bmp4Ratblood vessel endothelial cell proliferation involved in sprouting angiogenesis involved_inIEAUniProtKB:P12644 and ensembl:ENSP000002454511600115GO_REF:0000107EnsemblGO_REF:0000107
Bmp4Ratblood vessel endothelial cell proliferation involved in sprouting angiogenesis involved_inISOBMP4 (Homo sapiens)1624291 PMID:18787191RGDPMID:18787191
Bmp4Ratblood vessel endothelial cell proliferation involved in sprouting angiogenesis involved_inISSUniProtKB:P126441600115GO_REF:0000024UniProtGO_REF:0000024
Bmp4RatBMP signaling pathway acts_upstream_of_or_withinISOBMP4 (Homo sapiens)1624291 PMID:17472960RGDPMID:17472960
Bmp4RatBMP signaling pathway acts_upstream_of_or_withinISOBmp4 (Mus musculus)1624291MGI:2679262 PMID:14623234 more ...RGDPMID:14623234 more ...
Bmp4RatBMP signaling pathway acts_upstream_of_or_withinIEAUniProtKB:P21275 and ensembl:ENSMUSP000000737201600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
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Original Reference(s)
Bmp4Ratextracellular region located_inIEAUniProtKB-SubCell:SL-02431600115GO_REF:0000044UniProtGO_REF:0000044
Bmp4Ratextracellular region located_inISOBmp4 (Mus musculus)1624291 PMID:8358941RGDPMID:8358941
Bmp4Ratextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043
Bmp4Ratextracellular region located_inIEAUniProtKB:P21275 and ensembl:ENSMUSP000000737201600115GO_REF:0000107EnsemblGO_REF:0000107
Bmp4Ratextracellular region located_inIEAInterPro:IPR0156151600115GO_REF:0000002InterProGO_REF:0000002
Bmp4Ratextracellular space  IDA 8699509 RGD 
Bmp4Ratextracellular space  IDA 2301841matrix vesicles - cell derived and extracellular vesicles that are initiation sites of mineralizationRGD 
Bmp4Ratextracellular space located_inISOBmp4 (Mus musculus)1624291 PMID:17481601RGDPMID:17481601
Bmp4Ratextracellular space located_inIEAUniProtKB-KW:KW-02021600115GO_REF:0000043UniProtGO_REF:0000043
Bmp4Ratextracellular space located_inISOBMP4 (Homo sapiens)1624291 PMID:16604073RGDPMID:16604073
Bmp4Ratextracellular space located_inIEAUniProtKB:P12644 and ensembl:ENSP000002454511600115GO_REF:0000107EnsemblGO_REF:0000107
Bmp4Ratextracellular space located_inIEAUniProtKB:P21275 and ensembl:ENSMUSP000000737201600115GO_REF:0000107EnsemblGO_REF:0000107
Bmp4Ratextracellular space is_active_inIBAFB:FBgn0000490 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Bmp4Ratvesicle  IDA 2301841matrix vesicles - cell derived and extracellular vesicles that are initiation sites of mineralizationRGD 
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Molecular Function
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Original Reference(s)
Bmp4RatBMP receptor binding enablesIEAUniProtKB:P12644 and ensembl:ENSP000002454511600115GO_REF:0000107EnsemblGO_REF:0000107
Bmp4RatBMP receptor binding enablesISSUniProtKB:P126441600115GO_REF:0000024UniProtGO_REF:0000024
Bmp4RatBMP receptor binding enablesISOBMP4 (Homo sapiens)1624291 PMID:7811286RGDPMID:7811286
Bmp4Ratchemoattractant activity enablesIEAUniProtKB:P12644 and ensembl:ENSP000002454511600115GO_REF:0000107EnsemblGO_REF:0000107
Bmp4Ratchemoattractant activity enablesISOBMP4 (Homo sapiens)1624291 PMID:12631064RGDPMID:12631064
Bmp4Ratchemoattractant activity enablesISSUniProtKB:P126441600115GO_REF:0000024UniProtGO_REF:0000024
Bmp4Ratco-receptor binding enablesISOBMP4 (Homo sapiens)1624291UniProtKB:Q7TQ32 and PMID:16604073RGDPMID:16604073
Bmp4Ratco-receptor binding enablesIEAUniProtKB:P12644 and ensembl:ENSP000002454511600115GO_REF:0000107EnsemblGO_REF:0000107
Bmp4Ratcytokine activity enablesISOBMP4 (Homo sapiens)1624291 PMID:14749725RGDPMID:14749725
Bmp4Ratcytokine activity enablesIBAMGI:1346047 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Bmp4Ratcytokine activity enablesIEAUniProtKB-KW:KW-02021600115GO_REF:0000043UniProtGO_REF:0000043
Bmp4Ratcytokine activity enablesIEAUniProtKB:P12644 and ensembl:ENSP000002454511600115GO_REF:0000107EnsemblGO_REF:0000107
Bmp4Ratgrowth factor activity  IDA 631756 RGD 
Bmp4Ratgrowth factor activity enablesIEAInterPro:IPR001839 and InterPro:IPR0179481600115GO_REF:0000002InterProGO_REF:0000002
Bmp4Ratgrowth factor activity enablesIEAUniProtKB-KW:KW-03391600115GO_REF:0000043UniProtGO_REF:0000043
Bmp4Ratheparin binding enablesIEAUniProtKB:P21275 and ensembl:ENSMUSP000000737201600115GO_REF:0000107EnsemblGO_REF:0000107
Bmp4Ratheparin binding enablesISOBmp4 (Mus musculus)1624291 PMID:15381701RGDPMID:15381701
Bmp4Ratidentical protein binding  IPIBmp4 (Rattus norvegicus)2289011homodimerizationRGD 
Bmp4Ratprotein binding enablesISOBMP4 (Homo sapiens)1624291UniProtKB:G8JY02 more ...RGDPMID:12045205 more ...
Bmp4Ratprotein binding enablesISOBmp4 (Mus musculus)1624291PR:Q6PCX7 more ...RGDPMID:12897139 more ...
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RGD Manual Annotations


  
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Original Reference(s)
Bmp4RatBone morphogenetic proteins signaling pathway  ISOBmp4 (Mus musculus)11553861 RGD 

Imported Annotations - KEGG (archival)

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Bmp4Ratbasal cell carcinoma pathway  IEA 6907045 KEGGrno:05217
Bmp4RatHedgehog signaling pathway   IEA 6907045 KEGGrno:04340
Bmp4Rattransforming growth factor-beta superfamily mediated signaling pathway  IEA 6907045 KEGGrno:04350

Imported Annotations - PID (archival)

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Original Reference(s)
Bmp4RatBone morphogenetic proteins signaling pathway  ISOBMP4 (Homo sapiens)6484113 PIDPID:200144
Bmp4Ratglypican signaling pathway  ISOBMP4 (Homo sapiens)6484113 PIDPID:200225

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Reference Title
Reference Citation
1. A comprehensive expression survey of bone morphogenetic proteins in breast cancer highlights the importance of BMP4 and BMP7. Alarmo EL, etal., Breast Cancer Res Treat. 2007 Jun;103(2):239-46. Epub 2006 Sep 21.
2. Signaling by bone morphogenetic proteins and Smad1 modulates the postnatal differentiation of cerebellar cells. Angley C, etal., J Neurosci 2003 Jan 1;23(1):260-8.
3. Preliminary Analysis of the Nonsynonymous Polymorphism rs17563 in BMP4 Gene in Brazilian Population Suggests Protection for Nonsyndromic Cleft Lip and Palate. Araújo TK, etal., Plast Surg Int. 2012;2012:247104. doi: 10.1155/2012/247104. Epub 2012 Nov 27.
4. Bone morphogenetic protein 4 mediates estrogen-regulated sensory axon plasticity in the adult female reproductive tract. Bhattacherjee A, etal., J Neurosci. 2013 Jan 16;33(3):1050-61a. doi: 10.1523/JNEUROSCI.1704-12.2013.
5. The role of bone morphogenetic protein 4 in inner ear development and function. Blauwkamp MN, etal., Hear Res. 2007 Mar;225(1-2):71-9. Epub 2006 Dec 28.
6. Dominant-stable beta-catenin expression causes cell fate alterations and Wnt signaling antagonist expression in a murine granulosa cell tumor model. Boerboom D, etal., Cancer Res. 2006 Feb 15;66(4):1964-73.
7. A predicted functional single-nucleotide polymorphism of bone morphogenetic protein-4 gene affects mRNA expression and shows a significant association with cutaneous melanoma in Southern Italian population. Capasso M, etal., J Cancer Res Clin Oncol. 2009 Dec;135(12):1799-807. doi: 10.1007/s00432-009-0628-y. Epub 2009 Jun 26.
8. Bone morphogenetic protein-2 and -4 limit the number of enteric neurons but promote development of a TrkC-expressing neurotrophin-3-dependent subset. Chalazonitis A, etal., J Neurosci 2004 Apr 28;24(17):4266-82.
9. Haploinsufficient Bmp4 ocular phenotypes include anterior segment dysgenesis with elevated intraocular pressure. Chang B, etal., BMC Genet. 2001;2:18. Epub 2001 Nov 6.
10. Cloning and sequence of bone morphogenetic protein 4 cDNA from fetal rat calvarial cell. Chen D, etal., Biochim Biophys Acta 1993 Sep 23;1174(3):289-92.
11. Autocrine BMP4 signaling involves effect of cholesterol myristate on proliferation of mesenchymal stem cells. Chen DF, etal., Steroids. 2009 Nov-Dec;74(13-14):1066-72. doi: 10.1016/j.steroids.2009.08.008. Epub 2009 Aug 31.
12. Faulty bone morphogenetic protein signaling in esophageal atresia with tracheoesophageal fistula. Crowley AR, etal., J Pediatr Surg. 2006 Jul;41(7):1208-13.
13. Downregulation of bone morphogenetic protein 4 expression in coronary arterial endothelial cells: role of shear stress and the cAMP/protein kinase A pathway. Csiszar A, etal., Arterioscler Thromb Vasc Biol. 2007 Apr;27(4):776-82. Epub 2007 Feb 1.
14. Transplanted astrocytes derived from BMP- or CNTF-treated glial-restricted precursors have opposite effects on recovery and allodynia after spinal cord injury. Davies JE, etal., J Biol. 2008 Sep 19;7(7):24. doi: 10.1186/jbiol85.
15. Gene expression pathways induced by axotomy and decentralization of rat superior cervical ganglion neurons. Del Signore A, etal., Eur J Neurosci. 2006 Jan;23(1):65-74.
16. Rare variants in BMP2 and BMP4 found in otosclerosis patients reduce Smad signaling. Ealy M, etal., Otol Neurotol. 2014 Mar;35(3):395-400. doi: 10.1097/MAO.0000000000000244.
17. Effect of stretching stress on gene transcription related to early-phase differentiation in rat periodontal ligament cells. Enokiya Y, etal., Bull Tokyo Dent Coll. 2010;51(3):129-37.
18. Recombinant bone morphogenetic protein (BMP)-2 regulates costochondral growth plate chondrocytes and induces expression of BMP-2 and BMP-4 in a cell maturation-dependent manner. Erickson DM, etal., J Orthop Res. 1997 May;15(3):371-80.
19. Bone morphogenetic protein 4 mediates bile duct ligation induced liver fibrosis through activation of Smad1 and ERK1/2 in rat hepatic stellate cells. Fan J, etal., J Cell Physiol. 2006 May;207(2):499-505.
20. Bone morphogenetic protein-4 induced rat hepatic progenitor cell (WB-F344 cell) differentiation toward hepatocyte lineage. Fan J, etal., J Cell Physiol. 2009 Jul;220(1):72-81. doi: 10.1002/jcp.21731.
1 to 20 of 107 rows
1 to 10 of 15 rows
PMID:1521591   PMID:3201241   PMID:7657163   PMID:7799920   PMID:7811286   PMID:7848824   PMID:8104708   PMID:8358941   PMID:8674409   PMID:8769660   PMID:8898217   PMID:9187146  
PMID:9244299   PMID:9268572   PMID:9389648   PMID:9420335   PMID:9477322   PMID:9501024   PMID:9585504   PMID:9664686   PMID:9786991   PMID:9806931   PMID:9851982   PMID:10021330  
PMID:10340755   PMID:10391928   PMID:10704389   PMID:10706139   PMID:10964473   PMID:11023873   PMID:11401393   PMID:11436557   PMID:11493558   PMID:11502704   PMID:11719201   PMID:11865031  
PMID:12141440   PMID:12399320   PMID:12421925   PMID:12619935   PMID:12631064   PMID:12975322   PMID:14623234   PMID:14654219   PMID:14681194   PMID:14749725   PMID:15048926   PMID:15070745  
PMID:15218525   PMID:15289457   PMID:15381701   PMID:15451575   PMID:15516325   PMID:15525533   PMID:15591122   PMID:15634693   PMID:15716346   PMID:15772937   PMID:15800000   PMID:15936012  
PMID:15975920   PMID:16154126   PMID:16179481   PMID:16414041   PMID:16546160   PMID:16604073   PMID:16712836   PMID:16816361   PMID:16855091   PMID:16887039   PMID:16916379   PMID:16958105  
PMID:17071745   PMID:17118062   PMID:17244894   PMID:17350185   PMID:17442697   PMID:17472960   PMID:17481601   PMID:17522159   PMID:17555714   PMID:17600318   PMID:17698011   PMID:17720811  
PMID:17850284   PMID:17881493   PMID:17953369   PMID:17992660   PMID:18028901   PMID:18272846   PMID:18305125   PMID:18326817   PMID:18367557   PMID:18372242   PMID:18393306   PMID:18436533  
PMID:18437684   PMID:18462699   PMID:18548003   PMID:18622394   PMID:18643848   PMID:18692041   PMID:18776146   PMID:18787191   PMID:18823971   PMID:18924235   PMID:18997172   PMID:19001364  
PMID:19325147   PMID:19342445   PMID:19850029   PMID:20019778   PMID:20048761   PMID:20059955   PMID:20079000   PMID:20406889   PMID:20501701   PMID:20559569   PMID:20573232   PMID:20638445  
1 to 10 of 15 rows



Bmp4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81522,098,191 - 22,113,145 (-)NCBIGRCr8
mRatBN7.21519,618,538 - 19,633,494 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1519,618,542 - 19,623,306 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1522,400,667 - 22,404,237 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01523,358,675 - 23,362,245 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01521,608,597 - 21,612,175 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01520,776,060 - 20,791,013 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1520,776,054 - 20,822,740 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01524,734,987 - 24,749,935 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41522,283,171 - 22,286,757 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11522,298,892 - 22,305,718 (-)NCBI
Celera1520,029,866 - 20,033,452 (-)NCBICelera
RH 3.4 Map15185.6RGD
Cytogenetic Map15p14NCBI
BMP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381453,949,736 - 53,956,891 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1453,949,736 - 53,958,761 (-)EnsemblGRCh38hg38GRCh38
GRCh371454,416,454 - 54,423,609 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361453,486,204 - 53,493,304 (-)NCBINCBI36Build 36hg18NCBI36
Build 341453,486,206 - 53,491,020NCBI
Celera1434,466,196 - 34,473,296 (-)NCBICelera
Cytogenetic Map14q22.2NCBI
HuRef1434,579,652 - 34,586,754 (-)NCBIHuRef
CHM1_11454,355,438 - 54,362,538 (-)NCBICHM1_1
T2T-CHM13v2.01448,157,959 - 48,165,118 (-)NCBIT2T-CHM13v2.0
Bmp4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391446,620,982 - 46,628,126 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1446,620,977 - 46,628,126 (-)EnsemblGRCm39 Ensembl
GRCm381446,383,525 - 46,390,669 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1446,383,520 - 46,390,669 (-)EnsemblGRCm38mm10GRCm38
MGSCv371447,003,195 - 47,010,274 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361445,305,736 - 45,309,065 (-)NCBIMGSCv36mm8
Celera1442,555,453 - 42,562,519 (-)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1423.95NCBI
Bmp4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554099,432,841 - 9,440,303 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554099,432,835 - 9,439,680 (+)NCBIChiLan1.0ChiLan1.0
BMP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21555,076,681 - 55,083,868 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11454,293,198 - 54,548,492 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01434,542,132 - 34,549,286 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11452,821,872 - 52,828,781 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1452,821,872 - 52,828,752 (-)Ensemblpanpan1.1panPan2
BMP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1829,997,563 - 30,254,307 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl829,997,569 - 30,004,557 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha829,765,711 - 29,772,707 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0830,252,884 - 30,601,864 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl830,252,890 - 30,259,884 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1829,856,480 - 29,863,475 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0829,933,754 - 29,940,734 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0830,299,531 - 30,306,532 (-)NCBIUU_Cfam_GSD_1.0
Dog Cytomap8q21NCBI
Bmp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864075,280,082 - 75,287,313 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366971,056,636 - 1,061,468 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366971,054,237 - 1,061,468 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BMP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1183,416,146 - 183,422,637 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11183,415,989 - 183,422,888 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21203,773,963 - 203,780,310 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BMP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12431,097,673 - 31,104,774 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2431,097,538 - 31,101,225 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605319,326,010 - 19,333,125 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bmp4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473115,263,274 - 15,269,743 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473115,262,480 - 15,269,196 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Bmp4
78 total Variants

Predicted Target Of
Summary Value
Count of predictions:76
Count of miRNA genes:59
Interacting mature miRNAs:67
Transcripts:ENSRNOT00000012957
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 19 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat

1 to 10 of 19 rows
D14Mit129  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21519,618,758 - 19,618,897 (+)MAPPERmRatBN7.2
Rnor_6.01520,776,281 - 20,776,419NCBIRnor6.0
Rnor_5.01524,735,204 - 24,735,342UniSTSRnor5.0
RGSC_v3.41522,283,236 - 22,283,374UniSTSRGSC3.4
Celera1520,029,931 - 20,030,069UniSTS
Cytogenetic Map15p14UniSTS
PMC156609P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21519,622,147 - 19,622,245 (+)MAPPERmRatBN7.2
Rnor_6.01520,822,537 - 20,822,634NCBIRnor6.0
Rnor_6.01520,779,669 - 20,779,766NCBIRnor6.0
Rnor_5.01524,738,592 - 24,738,689UniSTSRnor5.0
Rnor_5.01524,780,296 - 24,780,393UniSTSRnor5.0
RGSC_v3.41522,286,624 - 22,286,721UniSTSRGSC3.4
Celera1520,033,319 - 20,033,416UniSTS
Cytogenetic Map15p14UniSTS
RH94860  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81522,098,402 - 22,098,613 (+)Marker Load Pipeline
mRatBN7.21519,618,749 - 19,618,960 (+)MAPPERmRatBN7.2
Rnor_6.01520,776,272 - 20,776,482NCBIRnor6.0
Rnor_5.01524,735,195 - 24,735,405UniSTSRnor5.0
RGSC_v3.41522,283,227 - 22,283,437UniSTSRGSC3.4
Celera1520,029,922 - 20,030,132UniSTS
RH 3.4 Map15185.6UniSTS
Cytogenetic Map15p14UniSTS
PMC34552P3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21519,619,310 - 19,619,610 (+)MAPPERmRatBN7.2
Rnor_6.01520,776,833 - 20,777,132NCBIRnor6.0
Rnor_5.01524,735,756 - 24,736,055UniSTSRnor5.0
RGSC_v3.41522,283,788 - 22,284,087UniSTSRGSC3.4
Celera1520,030,483 - 20,030,782UniSTS
Cytogenetic Map15p14UniSTS
MARC_5761-5762:996690803:2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21519,621,068 - 19,622,227 (+)MAPPERmRatBN7.2
Rnor_6.01520,778,590 - 20,779,748NCBIRnor6.0
Rnor_5.01524,737,513 - 24,738,671UniSTSRnor5.0
RGSC_v3.41522,285,545 - 22,286,703UniSTSRGSC3.4
Celera1520,032,240 - 20,033,398UniSTS
Cytogenetic Map15p14UniSTS
Bmp4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21519,619,173 - 19,620,744 (+)MAPPERmRatBN7.2
Rnor_6.01520,776,696 - 20,778,265NCBIRnor6.0
Rnor_5.01524,735,619 - 24,737,188UniSTSRnor5.0
RGSC_v3.41522,283,651 - 22,285,220UniSTSRGSC3.4
Celera1520,030,346 - 20,031,915UniSTS
Cytogenetic Map15p14UniSTS
UniSTS:496641  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21519,620,727 - 19,621,089 (+)MAPPERmRatBN7.2
Rnor_6.01520,778,249 - 20,778,610NCBIRnor6.0
Rnor_5.01524,737,172 - 24,737,533UniSTSRnor5.0
RGSC_v3.41522,285,204 - 22,285,565UniSTSRGSC3.4
Celera1520,031,899 - 20,032,260UniSTS
Cytogenetic Map15p14UniSTS
UniSTS:497280  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21519,619,508 - 19,620,747 (+)MAPPERmRatBN7.2
Rnor_6.01520,777,031 - 20,778,268NCBIRnor6.0
Rnor_5.01524,735,954 - 24,737,191UniSTSRnor5.0
RGSC_v3.41522,283,986 - 22,285,223UniSTSRGSC3.4
Celera1520,030,681 - 20,031,918UniSTS
Cytogenetic Map15p14UniSTS
BMP4_296  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21519,618,636 - 19,619,550 (+)MAPPERmRatBN7.2
Rnor_6.01520,776,159 - 20,777,072NCBIRnor6.0
Rnor_5.01524,735,082 - 24,735,995UniSTSRnor5.0
RGSC_v3.41522,283,114 - 22,284,027UniSTSRGSC3.4
Celera1520,029,809 - 20,030,722UniSTS
Cytogenetic Map15p14UniSTS
Bmp4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21519,619,526 - 19,620,924 (+)MAPPERmRatBN7.2
Rnor_6.01520,777,049 - 20,778,445NCBIRnor6.0
Rnor_5.01524,735,972 - 24,737,368UniSTSRnor5.0
RGSC_v3.41522,284,004 - 22,285,400UniSTSRGSC3.4
Celera1520,030,699 - 20,032,095UniSTS
Cytogenetic Map15p14UniSTS
Bmp4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21519,620,976 - 19,621,090 (+)MAPPERmRatBN7.2
Rnor_6.01520,778,498 - 20,778,611NCBIRnor6.0
Rnor_5.01524,737,421 - 24,737,534UniSTSRnor5.0
Celera1520,032,148 - 20,032,261UniSTS
Cytogenetic Map15p14UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000012957   ⟹   ENSRNOP00000012957
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1519,618,542 - 19,623,306 (-)Ensembl
Rnor_6.0 Ensembl1520,776,054 - 20,822,740 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000083268   ⟹   ENSRNOP00000075142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1519,618,542 - 19,622,271 (-)Ensembl
Rnor_6.0 Ensembl1520,776,254 - 20,783,063 (-)Ensembl
RefSeq Acc Id: NM_012827   ⟹   NP_036959
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81522,098,347 - 22,101,933 (-)NCBI
mRatBN7.21519,618,694 - 19,622,281 (-)NCBI
Rnor_6.01520,776,216 - 20,779,802 (-)NCBI
Rnor_5.01524,734,987 - 24,749,935 (-)NCBI
RGSC_v3.41522,283,171 - 22,286,757 (-)RGD
Celera1520,029,866 - 20,033,452 (-)RGD
Sequence:
RefSeq Acc Id: XM_006251746   ⟹   XP_006251808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81522,098,191 - 22,102,990 (-)NCBI
mRatBN7.21519,618,538 - 19,623,326 (-)NCBI
Rnor_6.01520,776,060 - 20,780,873 (-)NCBI
Rnor_5.01524,734,987 - 24,749,935 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251747   ⟹   XP_006251809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81522,098,191 - 22,102,974 (-)NCBI
mRatBN7.21519,618,538 - 19,623,349 (-)NCBI
Rnor_6.01520,776,060 - 20,780,873 (-)NCBI
Rnor_5.01524,734,987 - 24,749,935 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251748   ⟹   XP_006251810
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81522,098,191 - 22,105,271 (-)NCBI
mRatBN7.21519,618,538 - 19,625,562 (-)NCBI
Rnor_6.01520,776,060 - 20,783,093 (-)NCBI
Rnor_5.01524,734,987 - 24,749,935 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251749   ⟹   XP_006251811
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81522,098,191 - 22,102,990 (-)NCBI
mRatBN7.21519,618,538 - 19,623,301 (-)NCBI
Rnor_6.01520,776,060 - 20,780,845 (-)NCBI
Rnor_5.01524,734,987 - 24,749,935 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251751   ⟹   XP_006251813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81522,098,191 - 22,113,145 (-)NCBI
mRatBN7.21519,618,538 - 19,633,494 (-)NCBI
Rnor_6.01520,776,060 - 20,791,013 (-)NCBI
Rnor_5.01524,734,987 - 24,749,935 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008770501   ⟹   XP_008768723
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81522,098,191 - 22,102,959 (-)NCBI
mRatBN7.21519,618,538 - 19,622,467 (-)NCBI
Rnor_6.01520,776,060 - 20,780,101 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093006   ⟹   XP_038948934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81522,098,191 - 22,103,212 (-)NCBI
mRatBN7.21519,618,538 - 19,623,560 (-)NCBI
RefSeq Acc Id: XM_063273995   ⟹   XP_063130065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81522,098,191 - 22,105,213 (-)NCBI
1 to 5 of 11 rows
1 to 5 of 11 rows
RefSeq Acc Id: NP_036959   ⟸   NM_012827
- Peptide Label: precursor
- UniProtKB: Q6AYU9 (UniProtKB/TrEMBL),   F7FF39 (UniProtKB/TrEMBL),   Q811S3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251813   ⟸   XM_006251751
- Peptide Label: isoform X1
- UniProtKB: Q6AYU9 (UniProtKB/TrEMBL),   F7FF39 (UniProtKB/TrEMBL),   Q811S3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251810   ⟸   XM_006251748
- Peptide Label: isoform X1
- UniProtKB: Q6AYU9 (UniProtKB/TrEMBL),   F7FF39 (UniProtKB/TrEMBL),   Q811S3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251811   ⟸   XM_006251749
- Peptide Label: isoform X1
- UniProtKB: Q6AYU9 (UniProtKB/TrEMBL),   F7FF39 (UniProtKB/TrEMBL),   Q811S3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251809   ⟸   XM_006251747
- Peptide Label: isoform X1
- UniProtKB: Q6AYU9 (UniProtKB/TrEMBL),   F7FF39 (UniProtKB/TrEMBL),   Q811S3 (UniProtKB/TrEMBL)
- Sequence:
TGF-beta family profile

Name Modeler Protein Id AA Range Protein Structure
AF-Q06826-F1-model_v2 AlphaFold Q06826 1-408 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13699600
Promoter ID:EPDNEW_R10124
Type:single initiation site
Name:Bmp4_2
Description:bone morphogenetic protein 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R10125  EPDNEW_R10126  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01520,779,791 - 20,779,851EPDNEW
RGD ID:13699601
Promoter ID:EPDNEW_R10125
Type:multiple initiation site
Name:Bmp4_3
Description:bone morphogenetic protein 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R10124  EPDNEW_R10126  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01520,783,069 - 20,783,129EPDNEW


1 to 31 of 31 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-14183 BioCyc
Ensembl Genes ENSRNOG00000009694 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000012957 ENTREZGENE
Gene3D-CATH 2.10.90.10 UniProtKB/Swiss-Prot
  2.60.120.970 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7121295 IMAGE-MGC_LOAD
InterPro BMP4_TGF_beta-like UniProtKB/Swiss-Prot
  Cystine-knot_cytokine UniProtKB/Swiss-Prot
  TGF-b_C UniProtKB/Swiss-Prot
  TGF-b_propeptide UniProtKB/Swiss-Prot
  TGF-beta-rel UniProtKB/Swiss-Prot
  TGFb_CS UniProtKB/Swiss-Prot
MGC_CLONE MGC:93647 IMAGE-MGC_LOAD
NCBI Gene 25296 ENTREZGENE
PANTHER BONE MORPHOGENETIC PROTEIN 4 UniProtKB/Swiss-Prot
  PTHR11848 UniProtKB/Swiss-Prot
Pfam TGF_beta UniProtKB/Swiss-Prot
  TGFb_propeptide UniProtKB/Swiss-Prot
PhenoGen Bmp4 PhenoGen
PROSITE TGF_BETA_1 UniProtKB/Swiss-Prot
  TGF_BETA_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000009694 RatGTEx
SMART TGFB UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57501 UniProtKB/Swiss-Prot
TIGR TC219813
UniProt A0A0G2K9V2_RAT UniProtKB/TrEMBL
  BMP4_RAT UniProtKB/Swiss-Prot
  F7FF39 ENTREZGENE, UniProtKB/TrEMBL
  Q06826 ENTREZGENE
  Q6AYU9 ENTREZGENE, UniProtKB/TrEMBL
  Q811S3 ENTREZGENE, UniProtKB/TrEMBL
1 to 31 of 31 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Bmp4  Bone morphogenetic protein 4      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_expression expressed in primary fetal rat calvarial cells 631792
gene_function growth factor molecule 631793
gene_mutations_overexpression overexpressed in prolactinomas 629544
gene_process stimulates cell proliferation and expression of c-Myc 629544
gene_process involved in regulating postnatal cerebellar differentiation 631793
gene_process regulates expansion of proximal epithelial cells during lung differentiation 631794
gene_process increases the activity of cyclin-dependent kinase inhibitor p21 and plays a role in apoptosis 625588
gene_product member of the transforming growth factor beta superfamily 631792
gene_product member of the transforming growth factor-beta family 625588
gene_protein 408 amino acids 631792
gene_regulation mRNA expression is suppressed by activated Ras 625588