Cx3cl1 (C-X3-C motif chemokine ligand 1) - Rat Genome Database

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Gene: Cx3cl1 (C-X3-C motif chemokine ligand 1) Rattus norvegicus
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Symbol: Cx3cl1
Name: C-X3-C motif chemokine ligand 1
RGD ID: 620458
Description: Enables chemokine activity. Involved in several processes, including cellular response to cytokine stimulus; positive regulation of cell population proliferation; and regulation of signal transduction. Located in several cellular components, including neuron projection; neuronal cell body; and perinuclear region of cytoplasm. Used to study acute pancreatitis; ischemia; and status epilepticus. Biomarker of several diseases, including borna disease; brain disease (multiple); liver disease (multiple); lung disease (multiple); and pulmonary hypertension. Human ortholog(s) of this gene implicated in Cor pulmonale and common cold. Orthologous to human CX3CL1 (C-X3-C motif chemokine ligand 1); PARTICIPATES IN chemokine mediated signaling pathway; cytokine mediated signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2-acetamidofluorene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C-X3-C motif chemokine 1; chemokine (C-X3-C motif) ligand 1; Cx3c; CX3C membrane-anchored chemokine; fractalkine; neurotactin; Scyd1; small inducible cytokine subfamily D 1; small inducible cytokine subfamily D, 1; small-inducible cytokine D1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81910,233,326 - 10,244,856 (-)NCBIGRCr8
mRatBN7.21910,227,337 - 10,237,826 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1910,227,340 - 10,236,833 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1910,190,578 - 10,200,058 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01910,957,425 - 10,966,906 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01910,244,371 - 10,253,854 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01910,644,267 - 10,654,861 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1910,644,244 - 10,653,800 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01910,638,466 - 10,647,951 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41910,666,940 - 10,676,424 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11910,671,765 - 10,681,250 (-)NCBI
Celera1910,113,300 - 10,122,786 (-)NCBICelera
Cytogenetic Map19p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
Cx3cl1Ratacute pancreatitis treatmentIMP 9491790 RGD 
Cx3cl1Ratanti-basement membrane glomerulonephritis  IEP 4891946mRNA and protein:increased expression:glomerulusRGD 
Cx3cl1Ratasthma  ISOCX3CL1 (Homo sapiens)4891906protein:increased expression:plasmaRGD 
Cx3cl1Ratatopic dermatitis  ISOCX3CL1 (Homo sapiens)9491761protein:increased expression:serumRGD 
Cx3cl1Ratborna disease  IEP 4891998 RGD 
Cx3cl1Ratchronic fatigue syndrome  ISOCX3CL1 (Homo sapiens)11538286protein:decreased expression:plasma:RGD 
Cx3cl1RatChronic Mesangial Proliferative Glomerulonephritis  IEP 9491783 RGD 
Cx3cl1Ratcommon cold  ISOCX3CL1 (Homo sapiens)4140458 RGD 
Cx3cl1RatCor pulmonale  ISOCX3CL1 (Homo sapiens)4143386 RGD 
Cx3cl1RatCranial Nerve Injuries  IEP 4891994 RGD 
Cx3cl1Ratcystitis  IEP 4891972protein:increased expression:urinary bladder urotheliumRGD 
Cx3cl1Ratdermatomyositis  ISOCX3CL1 (Homo sapiens)9491763protein:expression:serumRGD 
Cx3cl1RatEndotoxemia  IEP 4891965protein:increased expression:atrium endocardiumRGD 
Cx3cl1RatExperimental Arthritis  IEP 4892002 RGD 
Cx3cl1RatExperimental Autoimmune Encephalomyelitis  IEP 4891973 RGD 
Cx3cl1RatExperimental Autoimmune Neuritis  IEP 4891968 RGD 
Cx3cl1RatExperimental Autoimmune Uveitis  IEP 9479740mRNA more ...RGD 
Cx3cl1RatExperimental Diabetes Mellitus  IEP 4891992mRNA:increased expression:kidneyRGD 
Cx3cl1Ratglomerulonephritis  IEP 4891995mRNA more ...RGD 
Cx3cl1RatHearing Loss  ISOCx3cl1 (Mus musculus)9491762mRNA and protein:altered expression:cochleaRGD 
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Cx3cl1RatBardet-Biedl syndrome  ISOCX3CL1 (Homo sapiens)8554872ClinVar Annotator: match by term: Bardet-Biedl syndromeClinVarPMID:11285252 more ...
Cx3cl1RatChromosome 16q12 Duplication Syndrome  ISOCX3CL1 (Homo sapiens)8554872ClinVar Annotator: match by term: Chromosome 16q12 duplication syndromeClinVarPMID:25741868
Cx3cl1Ratdevelopmental and epileptic encephalopathy  ISOCX3CL1 (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathyClinVarPMID:11285252 more ...
Cx3cl1Ratearly infantile epileptic encephalopathy  ISOCX3CL1 (Homo sapiens)8554872ClinVar Annotator: match by term: Early infantile epileptic encephalopathyClinVarPMID:11285252 more ...
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Cx3cl1Ratallergic disease  ISOCX3CL1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21625544
Cx3cl1RatExperimental Diabetes Mellitus  ISOCX3CL1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20388520
Cx3cl1RatMyocardial Ischemia  ISOCX3CL1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16214533
Cx3cl1Ratpneumonia  ISOCX3CL1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21625544
Cx3cl1RatProstatic Neoplasms  ISOCX3CL1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17199135

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Cx3cl1Rat1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane decreases expressionISOCX3CL1 (Homo sapiens)6480464o and p'-DDT results in decreased expression of CX3CL1 mRNACTDPMID:18204070
Cx3cl1Rat1,2-dimethylhydrazine multiple interactionsISOCx3cl1 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of CX3CL1 mRNACTDPMID:22206623
Cx3cl1Rat1,2-dimethylhydrazine decreases expressionISOCx3cl1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of CX3CL1 mRNACTDPMID:22206623
Cx3cl1Rat17alpha-ethynylestradiol affects expressionISOCx3cl1 (Mus musculus)6480464Ethinyl Estradiol affects the expression of CX3CL1 mRNACTDPMID:17555576
Cx3cl1Rat17beta-estradiol multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in increased expression of CX3CL1 mRNACTDPMID:26496021
Cx3cl1Rat17beta-estradiol increases expressionISOCX3CL1 (Homo sapiens)6480464Estradiol results in increased expression of CX3CL1 mRNACTDPMID:31614463
Cx3cl1Rat17beta-estradiol multiple interactionsISOCX3CL1 (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of CX3CL1 mRNACTDPMID:30165855
Cx3cl1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOCx3cl1 (Mus musculus)6480464Tetrachlorodibenzodioxin inhibits the reaction [EGF protein results in increased expression of CX3CL1 mRNA] and Tetrachlorodibenzodioxin promotes the reaction [[Dexamethasone co-treated with rosiglitazone co-treated with 1-Methyl-3-isobutylxanthine co-treated with INS1 protein] results in increased expression of CX3CL1 mRNA]CTDPMID:15667827 and PMID:16054899
Cx3cl1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of CX3CL1 mRNACTDPMID:33387578
Cx3cl1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOCX3CL1 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of CX3CL1 mRNACTDPMID:28351761
Cx3cl1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of CX3CL1 mRNACTDPMID:22298810
Cx3cl1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOCX3CL1 (Homo sapiens)6480464Tetrachlorodibenzodioxin affects the expression of CX3CL1 mRNACTDPMID:22298810
Cx3cl1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOCx3cl1 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of CX3CL1 mRNACTDPMID:19933214
Cx3cl1Rat2,3-dimethoxynaphthalene-1,4-dione decreases expressionISOCX3CL1 (Homo sapiens)64804642 more ...CTDPMID:17547211
Cx3cl1Rat2,4,6-trinitrobenzenesulfonic acid increases expressionISOCx3cl1 (Mus musculus)6480464Trinitrobenzenesulfonic Acid results in increased expression of CX3CL1 mRNACTDPMID:15973123
Cx3cl1Rat2,4-diaminotoluene increases expressionISOCx3cl1 (Mus musculus)64804642 and 4-diaminotoluene results in increased expression of CX3CL1 mRNACTDPMID:20713471
Cx3cl1Rat2-acetamidofluorene increases expressionEXP 64804642-Acetylaminofluorene results in increased expression of CX3CL1 mRNACTDPMID:17187413
Cx3cl1Rat2-methylcholine affects expressionISOCX3CL1 (Homo sapiens)6480464beta-methylcholine affects the expression of CX3CL1 mRNACTDPMID:21179406
Cx3cl1Rat3,3',4,4',5-pentachlorobiphenyl increases expressionEXP 64804643 more ...CTDPMID:19692669
Cx3cl1Rat3,3',4,4',5-pentachlorobiphenyl decreases expressionISOCX3CL1 (Homo sapiens)64804643 more ...CTDPMID:28351761

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Biological Process
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Cx3cl1Ratangiogenesis involved in wound healing acts_upstream_of_or_withinISOCx3cl1 (Mus musculus)1624291MGI:3608773 PMID:18097059RGDPMID:18097059
Cx3cl1Ratangiogenesis involved in wound healing acts_upstream_of_or_withinIEAUniProtKB:O35188 and ensembl:ENSMUSP000000342301600115GO_REF:0000107EnsemblGO_REF:0000107
Cx3cl1Ratantimicrobial humoral immune response mediated by antimicrobial peptide involved_inIBAPANTHER:PTN000245709 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cx3cl1Ratautocrine signaling involved_inIGIUniProtKB:P3541113673777PMID:12729461ARUK-UCL 
Cx3cl1Ratcell adhesion involved_inISOCX3CL1 (Homo sapiens)1624291UniProtKB:Q9Z0D9 and PMID:10187784RGDPMID:10187784
Cx3cl1Ratcell adhesion involved_inIEAUniProtKB-KW:KW-01301600115GO_REF:0000043UniProtGO_REF:0000043
Cx3cl1Ratcell adhesion involved_inIEAUniProtKB:P78423 and ensembl:ENSP000000060531600115GO_REF:0000107EnsemblGO_REF:0000107
Cx3cl1Ratcell chemotaxis involved_inIEAGO:00080091600115GO_REF:0000108GOCGO_REF:0000108
Cx3cl1Ratcell chemotaxis involved_inIEAUniProtKB:P78423 and ensembl:ENSP000000060531600115GO_REF:0000107EnsemblGO_REF:0000107
Cx3cl1Ratcell chemotaxis involved_inISOCX3CL1 (Homo sapiens)1624291 PMID:10415068RGDPMID:10415068
Cx3cl1Ratcell-cell adhesion involved_inIDA 13673777PMID:12729461ARUK-UCL 
Cx3cl1Ratcellular response to tumor necrosis factor involved_inIDA 13673777PMID:12729461ARUK-UCL 
Cx3cl1Ratchemokine-mediated signaling pathway involved_inIGIUniProtKB:P3541113673777PMID:12729461ARUK-UCL 
Cx3cl1Ratchemokine-mediated signaling pathway involved_inIBAMGI:1349183 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cx3cl1Ratchemokine-mediated signaling pathway involved_inIEAUniProtKB:P78423 and ensembl:ENSP000000060531600115GO_REF:0000107EnsemblGO_REF:0000107
Cx3cl1Ratchemokine-mediated signaling pathway involved_inISOCX3CL1 (Homo sapiens)1624291UniProtKB:P35411 more ...RGDPMID:10415068 and PMID:10869418
Cx3cl1Ratchemotaxis  IDA 727628 RGD 
Cx3cl1Ratchemotaxis involved_inIEAUniProtKB:P78423 and ensembl:ENSP000000060531600115GO_REF:0000107EnsemblGO_REF:0000107
Cx3cl1Ratchemotaxis involved_inIEAUniProtKB-KW:KW-01451600115GO_REF:0000043UniProtGO_REF:0000043
Cx3cl1Ratchemotaxis involved_inISOCX3CL1 (Homo sapiens)1624291 PMID:21829356 and PMID:23125415RGDPMID:21829356 and PMID:23125415
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Cellular Component
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Cx3cl1Ratcell body located_inIEAUniProtKB:O35188 and ensembl:ENSMUSP000000342301600115GO_REF:0000107EnsemblGO_REF:0000107
Cx3cl1Ratcell body located_inISOCx3cl1 (Mus musculus)1624291 PMID:12815711RGDPMID:12815711
Cx3cl1Ratcell projection  IDA 4892001 RGD 
Cx3cl1Ratcell projection located_inIDA 4892001PMID:11870871ARUK-UCL 
Cx3cl1Ratcell surface located_inISOCX3CL1 (Homo sapiens)1624291 PMID:12714508RGDPMID:12714508
Cx3cl1Ratcell surface located_inIEAUniProtKB:P78423 and ensembl:ENSP000000060531600115GO_REF:0000107EnsemblGO_REF:0000107
Cx3cl1Ratcell surface located_inIEAUniProtKB:O35188 and ensembl:ENSMUSP000000342301600115GO_REF:0000107EnsemblGO_REF:0000107
Cx3cl1Ratextracellular region located_inIDA 13673766PMID:16019082ARUK-UCL 
Cx3cl1Ratextracellular region located_inIEAUniProtKB-SubCell:SL-02431600115GO_REF:0000044UniProtGO_REF:0000044
Cx3cl1Ratextracellular region located_inIEAUniProtKB:P78423 and ensembl:ENSP000000060531600115GO_REF:0000107EnsemblGO_REF:0000107
Cx3cl1Ratextracellular region located_inIEAInterPro:IPR001811 and InterPro:IPR0360481600115GO_REF:0000002InterProGO_REF:0000002
Cx3cl1Ratextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043
Cx3cl1Ratextracellular region located_inISOCX3CL1 (Homo sapiens)1624291 PMID:10415068 more ...RGDPMID:10415068 more ...
Cx3cl1Ratextracellular space located_inIEAUniProtKB-KW:KW-02021600115GO_REF:0000043UniProtGO_REF:0000043
Cx3cl1Ratextracellular space is_active_inIBAMGI:101878 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cx3cl1Ratmembrane located_inISOCX3CL1 (Homo sapiens)1624291 PMID:10899174 and PMID:12714508RGDPMID:10899174 and PMID:12714508
Cx3cl1Ratmembrane located_inIEAUniProtKB:P78423 and ensembl:ENSP000000060531600115GO_REF:0000107EnsemblGO_REF:0000107
Cx3cl1Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Cx3cl1Ratmembrane located_inIDA 13673766PMID:16019082ARUK-UCL 
Cx3cl1Ratneuron projection located_inISOCx3cl1 (Mus musculus)1624291 PMID:12815711RGDPMID:12815711
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Molecular Function
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Cx3cl1RatCCR chemokine receptor binding enablesIBAMGI:108224 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cx3cl1Ratchemoattractant activity enablesISOCX3CL1 (Homo sapiens)1624291 PMID:10899174RGDPMID:10899174
Cx3cl1Ratchemoattractant activity enablesIEAUniProtKB:P78423 and ensembl:ENSP000000060531600115GO_REF:0000107EnsemblGO_REF:0000107
Cx3cl1Ratchemokine activity  IDA 727628 RGD 
Cx3cl1Ratchemokine activity enablesIBAMGI:104593 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cx3cl1Ratchemokine activity enablesIEAInterPro:IPR001811 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Cx3cl1Ratchemokine activity enablesIEAUniProtKB:P78423 and ensembl:ENSP000000060531600115GO_REF:0000107EnsemblGO_REF:0000107
Cx3cl1Ratchemokine activity enablesIEAUniProtKB:O35188 and ensembl:ENSMUSP000000342301600115GO_REF:0000107EnsemblGO_REF:0000107
Cx3cl1Ratchemokine activity enablesISOCX3CL1 (Homo sapiens)1624291UniProtKB:P35411 more ...RGDPMID:10415068 and PMID:21829356
Cx3cl1RatCX3C chemokine receptor binding enablesISSUniProtKB:P784231600115GO_REF:0000024UniProtGO_REF:0000024
Cx3cl1RatCX3C chemokine receptor binding enablesISOCx3cl1 (Mus musculus)1624291 PMID:18971423RGDPMID:18971423
Cx3cl1RatCX3C chemokine receptor binding enablesIEAUniProtKB:O35188 and ensembl:ENSMUSP000000342301600115GO_REF:0000107EnsemblGO_REF:0000107
Cx3cl1RatCX3C chemokine receptor binding enablesIEAUniProtKB:P78423 and ensembl:ENSP000000060531600115GO_REF:0000107EnsemblGO_REF:0000107
Cx3cl1RatCX3C chemokine receptor binding enablesISOCX3CL1 (Homo sapiens)1624291 PMID:10415068 and PMID:23125415RGDPMID:10415068 and PMID:23125415
Cx3cl1RatCXCR1 chemokine receptor binding enablesISOCX3CL1 (Homo sapiens)1624291UniProtKB:Q9Z0D9 and PMID:10187784RGDPMID:10187784
Cx3cl1RatCXCR1 chemokine receptor binding enablesIEAUniProtKB:P78423 and ensembl:ENSP000000060531600115GO_REF:0000107EnsemblGO_REF:0000107
Cx3cl1Ratcytokine activity enablesIEAUniProtKB-KW:KW-02021600115GO_REF:0000043UniProtGO_REF:0000043
Cx3cl1Ratintegrin binding enablesISOCX3CL1 (Homo sapiens)1624291 PMID:23125415RGDPMID:23125415
Cx3cl1Ratintegrin binding enablesIEAUniProtKB:P78423 and ensembl:ENSP000000060531600115GO_REF:0000107EnsemblGO_REF:0000107
Cx3cl1Ratintegrin binding enablesISSUniProtKB:P784231600115GO_REF:0000024UniProtGO_REF:0000024
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Imported Annotations - KEGG (archival)

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Cx3cl1Ratchemokine mediated signaling pathway  IEA 6907045 KEGGrno:04062
Cx3cl1Ratcytokine mediated signaling pathway  IEA 6907045 KEGGrno:04060

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Reference Title
Reference Citation
1. Small airway obstruction in severe pulmonary arterial hypertension correlates with increased airway CD8+ T-cells and fractalkine expression. Ars C, etal., Eur Respir J. 2009 Dec;34(6):1494-6.
2. Delta chemokine (fractalkine)--a novel mediator of pulmonary arterial hypertension in children undergoing cardiac surgery. Avni T, etal., Cytokine. 2010 Dec;52(3):143-5.
3. Fractalkine and CX 3 CR1 regulate hippocampal neurogenesis in adult and aged rats. Bachstetter AD, etal., Neurobiol Aging. 2011 Nov;32(11):2030-44. doi: 10.1016/j.neurobiolaging.2009.11.022. Epub 2009 Dec 16.
4. Role of Spinal Microglia in Visceral Hyperalgesia and NK1R Up-regulation in a Rat Model of Chronic Stress. Bradesi S, etal., Gastroenterology. 2008 Dec 24.
5. Chronic neuroinflammation and cognitive impairment following transient global cerebral ischemia: role of fractalkine/CX3CR1 signaling. Briones TL, etal., J Neuroinflammation. 2014 Jan 22;11:13. doi: 10.1186/1742-2094-11-13.
6. Fractalkine (CX3CL1) stimulated by nuclear factor kappaB (NF-kappaB)-dependent inflammatory signals induces aortic smooth muscle cell proliferation through an autocrine pathway. Chandrasekar B, etal., Biochem J. 2003 Jul 15;373(Pt 2):547-58. doi: 10.1042/BJ20030207.
7. Expression of CX3CL1/fractalkine by mesangial cells in vitro and in acute anti-Thy1 glomerulonephritis in rats. Chen YM, etal., Nephrol Dial Transplant. 2003 Dec;18(12):2505-14.
8. Expression of fractalkine (CX3CL1) and its receptor in endotoxin-induced uveitis. Chu L, etal., Ophthalmic Res. 2009;42(3):160-6. Epub 2009 Jul 31.
9. Infiltration of macrophages through the atrial endocardium of inflammation-induced rats: contribution of fractalkine. Date T, etal., Circ J. 2009 May;73(5):932-7. Epub 2009 Mar 12.
10. Efficacy and safety of an antiviral Iota-Carrageenan nasal spray: a randomized, double-blind, placebo-controlled exploratory study in volunteers with early symptoms of the common cold. Eccles R, etal., Respir Res. 2010 Aug 10;11:108.
11. Expression of fractalkine and its receptor, CX3CR1, in atopic dermatitis: possible contribution to skin inflammation. Echigo T, etal., J Allergy Clin Immunol. 2004 May;113(5):940-8.
12. Expression of CX3C chemokine, fractalkine, and its receptor CX3CR1 in experimental autoimmune anterior uveitis. Fang IM, etal., Mol Vis. 2005 Jul 1;11:443-51.
13. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
14. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
15. Role for neuronally derived fractalkine in mediating interactions between neurons and CX3CR1-expressing microglia. Harrison JK, etal., Proc Natl Acad Sci U S A 1998 Sep 1;95(18):10896-901.
16. Up regulated expression of fractalkine/CX3CL1 and CX3CR1 in patients with systemic sclerosis. Hasegawa M, etal., Ann Rheum Dis. 2005 Jan;64(1):21-8.
17. Fractalkine/CX3CL1 enhances GABA synaptic activity at serotonin neurons in the rat dorsal raphe nucleus. Heinisch S and Kirby LG, Neuroscience. 2009 Dec 15;164(3):1210-23. Epub 2009 Sep 10.
18. Pulmonary infection of mice with human metapneumovirus induces local cytotoxic T-cell and immunoregulatory cytokine responses similar to those seen with human respiratory syncytial virus. Herd KA, etal., J Gen Virol. 2010 May;91(Pt 5):1302-10. Epub 2010 Jan 6.
19. Fractalkine upregulates inflammation through CX3CR1 and the Jak-Stat pathway in severe acute pancreatitis rat model. Huang LY, etal., Inflammation. 2012 Jun;35(3):1023-30. doi: 10.1007/s10753-011-9406-5.
20. Expression of fractalkine (CX3CL1) and its receptor, CX3CR1, during acute and chronic inflammation in the rodent CNS. Hughes PM, etal., Glia. 2002 Mar 15;37(4):314-27.
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PMID:9177350   PMID:10187784   PMID:10415068   PMID:10869418   PMID:10899174   PMID:11777952   PMID:12125082   PMID:12631113   PMID:12714508   PMID:12815711   PMID:12837921   PMID:15111313  
PMID:15321787   PMID:15525271   PMID:15993821   PMID:16234287   PMID:16272359   PMID:16413026   PMID:16980051   PMID:17174525   PMID:17430890   PMID:17953351   PMID:17971299   PMID:18097059  
PMID:18292196   PMID:18322241   PMID:18971423   PMID:19422292   PMID:19474321   PMID:21829356   PMID:21840883   PMID:22387113   PMID:22435508   PMID:22536384   PMID:22871113   PMID:23125415  
PMID:23147224   PMID:23361876   PMID:23400803   PMID:23718544   PMID:23776243   PMID:23897050   PMID:23953563   PMID:23968561   PMID:24036597   PMID:24175290   PMID:24294368   PMID:24603149  
PMID:24731444   PMID:25195598   PMID:25435433   PMID:25494456   PMID:25559502   PMID:25768734   PMID:27209190   PMID:27923568   PMID:28612258   PMID:28849713   PMID:29313211   PMID:30248434  
PMID:32127397   PMID:32152663   PMID:32664639   PMID:32664984   PMID:32692220   PMID:32819407   PMID:33969675   PMID:34629047   PMID:35382731   PMID:37045646   PMID:38937701  



Cx3cl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81910,233,326 - 10,244,856 (-)NCBIGRCr8
mRatBN7.21910,227,337 - 10,237,826 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1910,227,340 - 10,236,833 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1910,190,578 - 10,200,058 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01910,957,425 - 10,966,906 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01910,244,371 - 10,253,854 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01910,644,267 - 10,654,861 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1910,644,244 - 10,653,800 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01910,638,466 - 10,647,951 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41910,666,940 - 10,676,424 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11910,671,765 - 10,681,250 (-)NCBI
Celera1910,113,300 - 10,122,786 (-)NCBICelera
Cytogenetic Map19p13NCBI
CX3CL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381657,372,490 - 57,385,044 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1657,372,477 - 57,385,044 (+)EnsemblGRCh38hg38GRCh38
GRCh371657,406,402 - 57,418,956 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361655,963,915 - 55,976,457 (+)NCBINCBI36Build 36hg18NCBI36
Build 341655,963,914 - 55,976,455NCBI
Celera1641,906,410 - 41,918,956 (+)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1643,274,294 - 43,286,836 (+)NCBIHuRef
CHM1_11658,814,629 - 58,827,168 (+)NCBICHM1_1
T2T-CHM13v2.01663,167,607 - 63,180,165 (+)NCBIT2T-CHM13v2.0
Cx3cl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39895,498,808 - 95,509,055 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl895,498,637 - 95,509,055 (+)EnsemblGRCm39 Ensembl
GRCm38894,772,180 - 94,782,427 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl894,772,009 - 94,782,427 (+)EnsemblGRCm38mm10GRCm38
MGSCv37897,296,080 - 97,306,327 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36897,661,355 - 97,671,556 (+)NCBIMGSCv36mm8
Celera899,100,414 - 99,110,655 (+)NCBICelera
Cytogenetic Map8C5NCBI
cM Map846.79NCBI
Cx3cl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543315,023,050 - 15,034,711 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543315,023,272 - 15,034,650 (+)NCBIChiLan1.0ChiLan1.0
CX3CL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21866,840,670 - 66,853,297 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11672,761,444 - 72,774,073 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01637,646,447 - 37,659,078 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11656,779,065 - 56,791,760 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1656,779,065 - 56,791,760 (+)Ensemblpanpan1.1panPan2
CX3CL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1259,022,794 - 59,032,095 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,022,794 - 59,032,095 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha255,652,232 - 55,661,533 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,561,127 - 59,570,437 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,559,167 - 59,570,279 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1256,392,704 - 56,402,005 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0257,400,382 - 57,409,687 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0258,293,678 - 58,302,979 (-)NCBIUU_Cfam_GSD_1.0
Cx3cl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934950,134,360 - 50,145,250 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364759,443,733 - 9,455,062 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364759,443,851 - 9,454,715 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CX3CL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1619,312,351 - 19,324,439 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2617,304,118 - 17,315,820 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103233058
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1543,310,711 - 43,323,533 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl543,310,753 - 43,323,529 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604732,993,345 - 33,006,077 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cx3cl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474628,677,709 - 28,689,122 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474628,677,956 - 28,688,638 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Cx3cl1
101 total Variants

Predicted Target Of
Summary Value
Count of predictions:330
Count of miRNA genes:195
Interacting mature miRNAs:250
Transcripts:ENSRNOT00000022128
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 18 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat

1 to 10 of 18 rows
U92565  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21910,227,908 - 10,228,061 (+)MAPPERmRatBN7.2
Rnor_6.01910,644,839 - 10,644,991NCBIRnor6.0
Rnor_5.01910,639,030 - 10,639,182UniSTSRnor5.0
RGSC_v3.41910,667,504 - 10,667,656UniSTSRGSC3.4
Celera1910,113,864 - 10,114,016UniSTS
Cytogenetic Map19p12UniSTS
BF390094  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21910,235,251 - 10,235,409 (+)MAPPERmRatBN7.2
Rnor_6.01910,652,182 - 10,652,339NCBIRnor6.0
Rnor_5.01910,646,373 - 10,646,530UniSTSRnor5.0
RGSC_v3.41910,674,845 - 10,675,002UniSTSRGSC3.4
Celera1910,121,207 - 10,121,364UniSTS
RH 3.4 Map1997.1UniSTS
Cytogenetic Map19p12UniSTS
PMC86945P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21910,229,962 - 10,230,173 (+)MAPPERmRatBN7.2
Rnor_6.01910,646,893 - 10,647,103NCBIRnor6.0
Rnor_5.01910,641,084 - 10,641,294UniSTSRnor5.0
RGSC_v3.41910,669,558 - 10,669,768UniSTSRGSC3.4
Celera1910,115,918 - 10,116,128UniSTS
Cytogenetic Map19p12UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000022128   ⟹   ENSRNOP00000022128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1910,227,340 - 10,236,833 (-)Ensembl
Rnor_6.0 Ensembl1910,644,244 - 10,653,800 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112965   ⟹   ENSRNOP00000077452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1910,227,340 - 10,232,896 (-)Ensembl
RefSeq Acc Id: NM_134455   ⟹   NP_604450
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81910,233,334 - 10,242,820 (-)NCBI
mRatBN7.21910,227,345 - 10,236,832 (-)NCBI
Rnor_6.01910,644,275 - 10,653,761 (-)NCBI
Rnor_5.01910,638,466 - 10,647,951 (-)NCBI
RGSC_v3.41910,666,940 - 10,676,424 (-)RGD
Celera1910,113,300 - 10,122,786 (-)RGD
Sequence:
RefSeq Acc Id: XM_008772329   ⟹   XP_008770551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81910,233,326 - 10,244,856 (-)NCBI
mRatBN7.21910,227,337 - 10,237,826 (-)NCBI
Rnor_6.01910,644,267 - 10,654,861 (-)NCBI
Sequence:
1 to 9 of 9 rows
Protein RefSeqs NP_604450 (Get FASTA)   NCBI Sequence Viewer  
  XP_008770551 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC33834 (Get FASTA)   NCBI Sequence Viewer  
  AAH70938 (Get FASTA)   NCBI Sequence Viewer  
  AAQ90150 (Get FASTA)   NCBI Sequence Viewer  
  CAA76404 (Get FASTA)   NCBI Sequence Viewer  
  EDL87326 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000022128
GenBank Protein O55145 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
RefSeq Acc Id: NP_604450   ⟸   NM_134455
- Peptide Label: precursor
- UniProtKB: O55145 (UniProtKB/Swiss-Prot),   Q6IRF7 (UniProtKB/TrEMBL),   A6JY48 (UniProtKB/TrEMBL),   F7EX30 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770551   ⟸   XM_008772329
- Peptide Label: isoform X1
- UniProtKB: O55145 (UniProtKB/Swiss-Prot),   Q6IRF7 (UniProtKB/TrEMBL),   A6JY48 (UniProtKB/TrEMBL),   F7EX30 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022128   ⟸   ENSRNOT00000022128
Ensembl Acc Id: ENSRNOP00000077452   ⟸   ENSRNOT00000112965
Name Modeler Protein Id AA Range Protein Structure
AF-O55145-F1-model_v2 AlphaFold O55145 1-393 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13700942
Promoter ID:EPDNEW_R11466
Type:single initiation site
Name:Cx3cl1_1
Description:C-X3-C motif chemokine ligand 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01910,653,810 - 10,653,870EPDNEW


1 to 26 of 26 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-6512 BioCyc
Ensembl Genes ENSRNOG00000016326 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000022128 ENTREZGENE
Gene3D-CATH 2.40.50.40 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7099250 IMAGE-MGC_LOAD
InterPro Chemokine_b/g/d UniProtKB/Swiss-Prot
  Chemokine_CX3C UniProtKB/Swiss-Prot
  Chemokine_IL8-like_dom UniProtKB/Swiss-Prot
  Interleukin_8-like_sf UniProtKB/Swiss-Prot
KEGG Report rno:89808 UniProtKB/Swiss-Prot
MGC_CLONE MGC:91495 IMAGE-MGC_LOAD
NCBI Gene 89808 ENTREZGENE
PANTHER PTHR12015 UniProtKB/Swiss-Prot
  PTHR12015:SF92 UniProtKB/Swiss-Prot
Pfam IL8 UniProtKB/Swiss-Prot
PhenoGen Cx3cl1 PhenoGen
PRINTS FRACTALKINE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016326 RatGTEx
SMART SCY UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54117 UniProtKB/Swiss-Prot
UniProt A0A8I5Y6B8_RAT UniProtKB/TrEMBL
  A6JY48 ENTREZGENE, UniProtKB/TrEMBL
  F7EX30 ENTREZGENE, UniProtKB/TrEMBL
  O55145 ENTREZGENE
  Q6IRF7 ENTREZGENE
  X3CL1_RAT UniProtKB/Swiss-Prot
1 to 26 of 26 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-08 Cx3cl1  C-X3-C motif chemokine ligand 1  Cx3cl1  chemokine (C-X3-C motif) ligand 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-02-26 Cx3cl1  chemokine (C-X3-C motif) ligand 1      Symbol and Name status set to approved 625702 APPROVED
2003-03-04 Cx3cl1  chemokine (C-X3-C motif) ligand 1  Scyd1  small inducible cytokine subfamily D, 1  Symbol and Name updated to reflect Human and Mouse nomenclature 61478 PROVISIONAL
2002-08-07 Scyd1  small inducible cytokine subfamily D, 1      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_domains contains a Cys-X-X-X-Cys motif 728291