Cx3cl1 (C-X3-C motif chemokine ligand 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Cx3cl1 (C-X3-C motif chemokine ligand 1) Heterocephalus glaber
Analyze
Symbol: Cx3cl1
Name: C-X3-C motif chemokine ligand 1
RGD ID: 18926098
Description: ENCODES a protein that exhibits chemoattractant activity (ortholog); chemokine activity (ortholog); CX3C chemokine receptor binding (ortholog); INVOLVED IN angiogenesis involved in wound healing (ortholog); autocrine signaling (ortholog); cell adhesion (ortholog); ASSOCIATED WITH acute pancreatitis (ortholog); allergic disease (ortholog); anti-basement membrane glomerulonephritis (ortholog); FOUND IN cell body (ortholog); cell projection (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fractalkine
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474628,677,709 - 28,689,122 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474628,677,956 - 28,688,638 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 49 rows

  
Object Symbol
Species
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Evidence
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Reference
Notes
Source
Original Reference(s)
Cx3cl1Naked Mole-Ratacute pancreatitis treatmentISOCx3cl1 (Rattus norvegicus)9068941 RGDPMID:22213034 and REF_RGD_ID:9491790
Cx3cl1Naked Mole-Ratanti-basement membrane glomerulonephritis  ISOCx3cl1 (Rattus norvegicus)9068941mRNA and protein:increased expression:glomerulusRGDPMID:19590241 and REF_RGD_ID:4891946
Cx3cl1Naked Mole-Ratasthma  ISOCX3CL1 (Homo sapiens)9068941protein:increased expression:plasmaRGDPMID:14657873 and REF_RGD_ID:4891906
Cx3cl1Naked Mole-Ratatopic dermatitis  ISOCX3CL1 (Homo sapiens)9068941protein:increased expression:serumRGDPMID:15131578 and REF_RGD_ID:9491761
Cx3cl1Naked Mole-Ratborna disease  ISOCx3cl1 (Rattus norvegicus)9068941 RGDPMID:12053272 and REF_RGD_ID:4891998
Cx3cl1Naked Mole-Ratchronic fatigue syndrome  ISOCX3CL1 (Homo sapiens)9068941protein:decreased expression:plasma:RGDPMID:26615570 and REF_RGD_ID:11538286
Cx3cl1Naked Mole-RatChronic Mesangial Proliferative Glomerulonephritis  ISOCx3cl1 (Rattus norvegicus)9068941 RGDPMID:12028445 and REF_RGD_ID:9491783
Cx3cl1Naked Mole-Ratcommon cold  ISOCX3CL1 (Homo sapiens)9068941 RGDPMID:20696083 and REF_RGD_ID:4140458
Cx3cl1Naked Mole-RatCor pulmonale  ISOCX3CL1 (Homo sapiens)9068941 RGDPMID:20669672 and REF_RGD_ID:4143386
Cx3cl1Naked Mole-RatCranial Nerve Injuries  ISOCx3cl1 (Rattus norvegicus)9068941 RGDPMID:15153618 and REF_RGD_ID:4891994
Cx3cl1Naked Mole-Ratcystitis  ISOCx3cl1 (Rattus norvegicus)9068941protein:increased expression:urinary bladder urotheliumRGDPMID:16651033 and REF_RGD_ID:4891972
Cx3cl1Naked Mole-Ratdermatomyositis  ISOCX3CL1 (Homo sapiens)9068941protein:expression:serumRGDPMID:22394569 and REF_RGD_ID:9491763
Cx3cl1Naked Mole-RatEndotoxemia  ISOCx3cl1 (Rattus norvegicus)9068941protein:increased expression:atrium endocardiumRGDPMID:19282612 and REF_RGD_ID:4891965
Cx3cl1Naked Mole-RatExperimental Arthritis  ISOCx3cl1 (Rattus norvegicus)9068941 RGDPMID:11465708 and REF_RGD_ID:4892002
Cx3cl1Naked Mole-RatExperimental Autoimmune Encephalomyelitis  ISOCx3cl1 (Rattus norvegicus)9068941 RGDPMID:16053521 and REF_RGD_ID:4891973
Cx3cl1Naked Mole-RatExperimental Autoimmune Neuritis  ISOCx3cl1 (Rattus norvegicus)9068941 RGDPMID:18448252 and REF_RGD_ID:4891968
Cx3cl1Naked Mole-RatExperimental Autoimmune Uveitis  ISOCx3cl1 (Rattus norvegicus)9068941mRNA more ...RGDPMID:16030495 and REF_RGD_ID:9479740
Cx3cl1Naked Mole-RatExperimental Diabetes Mellitus  ISOCx3cl1 (Rattus norvegicus)9068941mRNA:increased expression:kidneyRGDPMID:15153757 and REF_RGD_ID:4891992
Cx3cl1Naked Mole-Ratglomerulonephritis  ISOCx3cl1 (Rattus norvegicus)9068941mRNA more ...RGDPMID:14605272 and REF_RGD_ID:4891995
Cx3cl1Naked Mole-RatHearing Loss  ISOCx3cl1 (Mus musculus)9068941mRNA and protein:altered expression:cochleaRGDPMID:24781382 and REF_RGD_ID:9491762
1 to 20 of 49 rows
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Original Reference(s)
Cx3cl1Naked Mole-RatBardet-Biedl syndrome  ISOCX3CL1 (Homo sapiens)8554872ClinVar Annotator: match by term: Bardet-Biedl syndromeClinVarPMID:11285252 more ...
Cx3cl1Naked Mole-RatChromosome 16q12 Duplication Syndrome  ISOCX3CL1 (Homo sapiens)8554872ClinVar Annotator: match by term: Chromosome 16q12 duplication syndromeClinVarPMID:25741868
Cx3cl1Naked Mole-Ratdevelopmental and epileptic encephalopathy  ISOCX3CL1 (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathyClinVarPMID:11285252 more ...
Cx3cl1Naked Mole-Ratearly infantile epileptic encephalopathy  ISOCX3CL1 (Homo sapiens)8554872ClinVar Annotator: match by term: Early infantile epileptic encephalopathyClinVarPMID:11285252 more ...
Object Symbol
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Original Reference(s)
Cx3cl1Naked Mole-Ratallergic disease  ISOCX3CL1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:21625544
Cx3cl1Naked Mole-RatExperimental Diabetes Mellitus  ISOCX3CL1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:20388520
Cx3cl1Naked Mole-RatMyocardial Ischemia  ISOCX3CL1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:16214533
Cx3cl1Naked Mole-Ratpneumonia  ISOCX3CL1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:21625544
Cx3cl1Naked Mole-RatProstatic Neoplasms  ISOCX3CL1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:17199135


Biological Process
1 to 20 of 63 rows

  
Object Symbol
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Original Reference(s)
Cx3cl1Naked Mole-Ratangiogenesis involved in wound healing acts_upstream_of_or_withinISOMGI:36087739068941 PMID:18097059MGIPMID:18097059
Cx3cl1Naked Mole-Ratantimicrobial humoral immune response mediated by antimicrobial peptide involved_inIEAPANTHER:PTN000387949150520179 TreeGrafterGO_REF:0000118
Cx3cl1Naked Mole-Ratautocrine signaling involved_inISOUniProtKB:P354119068941PMID:12729461ARUK-UCLPMID:12729461 and REF_RGD_ID:13673777
Cx3cl1Naked Mole-Ratcell adhesion involved_inISOUniProtKB:Q9Z0D99068941 PMID:10187784ARUK-UCLPMID:10187784
Cx3cl1Naked Mole-Ratcell chemotaxis involved_inIEAPANTHER:PTN000387949150520179 TreeGrafterGO_REF:0000118
Cx3cl1Naked Mole-Ratcell-cell adhesion involved_inISOCx3cl1 (Rattus norvegicus)9068941PMID:12729461ARUK-UCLPMID:12729461 and REF_RGD_ID:13673777
Cx3cl1Naked Mole-Ratcellular response to tumor necrosis factor involved_inISOCx3cl1 (Rattus norvegicus)9068941PMID:12729461ARUK-UCLPMID:12729461 and REF_RGD_ID:13673777
Cx3cl1Naked Mole-Ratchemokine-mediated signaling pathway involved_inIEAPANTHER:PTN000387949150520179 TreeGrafterGO_REF:0000118
Cx3cl1Naked Mole-Ratchemotaxis  ISOCx3cl1 (Rattus norvegicus)9068941 RGDPMID:9724801 and REF_RGD_ID:727628
Cx3cl1Naked Mole-Ratchemotaxis involved_inISOUniProtKB:P492389068941PMID:16019082ARUK-UCLPMID:16019082 and REF_RGD_ID:13673766
Cx3cl1Naked Mole-Ratchemotaxis involved_inISOCX3CL1 (Homo sapiens)9068941 PMID:23125415UniProtPMID:23125415
Cx3cl1Naked Mole-Ratchemotaxis involved_inISOCX3CL1 (Homo sapiens)9068941 PMID:21829356UniProtPMID:21829356
Cx3cl1Naked Mole-Ratcytokine-mediated signaling pathway acts_upstream_of_or_withinISOCx3cl1 (Mus musculus)9068941 PMID:18971423MGIPMID:18971423
Cx3cl1Naked Mole-Rateosinophil chemotaxis involved_inIEAPANTHER:PTN000387949150520179 TreeGrafterGO_REF:0000118
Cx3cl1Naked Mole-Ratextrinsic apoptotic signaling pathway in absence of ligand acts_upstream_ofISOCx3cl1 (Mus musculus)9068941 PMID:18322241 and PMID:18971423MGIPMID:18322241 and PMID:18971423
Cx3cl1Naked Mole-RatG protein-coupled receptor signaling pathway involved_inISOUniProtKB:P354119068941PMID:12729461ARUK-UCLPMID:12729461 and REF_RGD_ID:13673777
Cx3cl1Naked Mole-Ratimmune response involved_inIEAInterPro:IPR001811 and InterPro:IPR036048150520179 InterProGO_REF:0000002
Cx3cl1Naked Mole-Ratinflammatory response involved_inIEAPANTHER:PTN000387949150520179 TreeGrafterGO_REF:0000118
Cx3cl1Naked Mole-Ratinhibitory postsynaptic potential  ISOCx3cl1 (Rattus norvegicus)9068941 RGDPMID:19748551 and REF_RGD_ID:4891944
Cx3cl1Naked Mole-Ratintegrin activation involved_inISOCX3CL1 (Homo sapiens)9068941 PMID:23125415UniProtPMID:23125415
1 to 20 of 63 rows

Cellular Component
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Object Symbol
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Original Reference(s)
Cx3cl1Naked Mole-Ratcell body located_inISOCx3cl1 (Mus musculus)9068941 PMID:12815711ARUK-UCLPMID:12815711
Cx3cl1Naked Mole-Ratcell projection located_inISOCx3cl1 (Rattus norvegicus)9068941PMID:11870871ARUK-UCLPMID:11870871 and REF_RGD_ID:4892001
Cx3cl1Naked Mole-Ratcell projection  ISOCx3cl1 (Rattus norvegicus)9068941 RGDPMID:11870871 and REF_RGD_ID:4892001
Cx3cl1Naked Mole-Ratcell surface located_inISOCX3CL1 (Homo sapiens)9068941 PMID:12714508UniProtPMID:12714508
Cx3cl1Naked Mole-Ratextracellular region located_inIEAInterPro:IPR001811 and InterPro:IPR036048150520179 InterProGO_REF:0000002
Cx3cl1Naked Mole-Ratextracellular space located_inIEAPANTHER:PTN000387949150520179 TreeGrafterGO_REF:0000118
Cx3cl1Naked Mole-Ratextracellular space located_inIEAUniProtKB-KW:KW-0202150520179 UniProtGO_REF:0000043
Cx3cl1Naked Mole-Ratmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
Cx3cl1Naked Mole-Ratneuron projection located_inISOCx3cl1 (Mus musculus)9068941 PMID:12815711ARUK-UCLPMID:12815711
Cx3cl1Naked Mole-Ratneuron projection located_inISOCx3cl1 (Rattus norvegicus)9068941PMID:15341587ARUK-UCLPMID:15341587 and REF_RGD_ID:1358720
Cx3cl1Naked Mole-Ratneuronal cell body located_inISOCx3cl1 (Rattus norvegicus)9068941PMID:15341587ARUK-UCLPMID:15341587 and REF_RGD_ID:1358720
Cx3cl1Naked Mole-Ratneuronal cell body located_inISOCx3cl1 (Mus musculus)9068941 PMID:12815711ARUK-UCLPMID:12815711
Cx3cl1Naked Mole-Ratneuronal cell body located_inISOCx3cl1 (Rattus norvegicus)9068941PMID:12059974ARUK-UCLPMID:12059974 and REF_RGD_ID:13673875
Cx3cl1Naked Mole-Ratperinuclear region of cytoplasm located_inISOCx3cl1 (Rattus norvegicus)9068941PMID:11870871ARUK-UCLPMID:11870871 and REF_RGD_ID:4892001
Cx3cl1Naked Mole-Ratperinuclear region of cytoplasm  ISOCx3cl1 (Rattus norvegicus)9068941 RGDPMID:11870871 and REF_RGD_ID:4892001
Cx3cl1Naked Mole-Ratplasma membrane located_inISOCx3cl1 (Mus musculus)9068941 PMID:28612258ARUK-UCLPMID:28612258
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Molecular Function
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Object Symbol
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Reference
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Original Reference(s)
Cx3cl1Naked Mole-RatCCR chemokine receptor binding enablesIEAPANTHER:PTN000387949150520179 TreeGrafterGO_REF:0000118
Cx3cl1Naked Mole-Ratchemoattractant activity enablesISOCX3CL1 (Homo sapiens)9068941 PMID:10899174ARUK-UCLPMID:10899174
Cx3cl1Naked Mole-Ratchemokine activity  ISOCx3cl1 (Rattus norvegicus)9068941 RGDPMID:9724801 and REF_RGD_ID:727628
Cx3cl1Naked Mole-Ratchemokine activity enablesIEAInterPro:IPR001811 more ...150520179 InterProGO_REF:0000002
Cx3cl1Naked Mole-Ratchemokine activity enablesIEAPANTHER:PTN000387949150520179 TreeGrafterGO_REF:0000118
Cx3cl1Naked Mole-RatCX3C chemokine receptor binding enablesISOCX3CL1 (Homo sapiens)9068941 PMID:10415068 and PMID:23125415ARUK-UCLPMID:10415068 and PMID:23125415
Cx3cl1Naked Mole-RatCX3C chemokine receptor binding enablesISOCx3cl1 (Mus musculus)9068941 PMID:18971423UniProtPMID:18971423
Cx3cl1Naked Mole-RatCXCR1 chemokine receptor binding enablesISOUniProtKB:Q9Z0D99068941 PMID:10187784ARUK-UCLPMID:10187784
Cx3cl1Naked Mole-Ratcytokine activity enablesIEAUniProtKB-KW:KW-0202150520179 UniProtGO_REF:0000043
Cx3cl1Naked Mole-Ratintegrin binding enablesISOCX3CL1 (Homo sapiens)9068941 PMID:23125415UniProtPMID:23125415
Cx3cl1Naked Mole-Ratprotein binding enablesISOUniProtKB:P492389068941 PMID:9931005UniProtPMID:9931005
Cx3cl1Naked Mole-Ratprotein binding enablesISOUniProtKB:P051069068941 PMID:23125415IntActPMID:23125415
Cx3cl1Naked Mole-Ratprotein binding enablesISOUniProtKB:P05106 and UniProtKB:P055569068941 PMID:24789099IntActPMID:24789099
Cx3cl1Naked Mole-Ratprotein binding enablesISOUniProtKB:P693329068941 PMID:25745166IntActPMID:25745166
Cx3cl1Naked Mole-Ratprotein binding enablesISOUniProtKB:Q8I2D9 and UniProtKB:Q8IEJ09068941 PMID:27653778UniProtPMID:27653778
1 to 15 of 15 rows

PMID:21993625   PMID:22301074   PMID:30032202  



Cx3cl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474628,677,709 - 28,689,122 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474628,677,956 - 28,688,638 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CX3CL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381657,372,490 - 57,385,044 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1657,372,477 - 57,385,044 (+)EnsemblGRCh38hg38GRCh38
GRCh371657,406,402 - 57,418,956 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361655,963,915 - 55,976,457 (+)NCBINCBI36Build 36hg18NCBI36
Build 341655,963,914 - 55,976,455NCBI
Celera1641,906,410 - 41,918,956 (+)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1643,274,294 - 43,286,836 (+)NCBIHuRef
CHM1_11658,814,629 - 58,827,168 (+)NCBICHM1_1
T2T-CHM13v2.01663,167,607 - 63,180,165 (+)NCBIT2T-CHM13v2.0
Cx3cl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39895,498,808 - 95,509,055 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl895,498,637 - 95,509,055 (+)EnsemblGRCm39 Ensembl
GRCm38894,772,180 - 94,782,427 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl894,772,009 - 94,782,427 (+)EnsemblGRCm38mm10GRCm38
MGSCv37897,296,080 - 97,306,327 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36897,661,355 - 97,671,556 (+)NCBIMGSCv36mm8
Celera899,100,414 - 99,110,655 (+)NCBICelera
Cytogenetic Map8C5NCBI
cM Map846.79NCBI
Cx3cl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81910,233,326 - 10,244,856 (-)NCBIGRCr8
mRatBN7.21910,227,337 - 10,237,826 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1910,227,340 - 10,236,833 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1910,190,578 - 10,200,058 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01910,957,425 - 10,966,906 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01910,244,371 - 10,253,854 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01910,644,267 - 10,654,861 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1910,644,244 - 10,653,800 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01910,638,466 - 10,647,951 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41910,666,940 - 10,676,424 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11910,671,765 - 10,681,250 (-)NCBI
Celera1910,113,300 - 10,122,786 (-)NCBICelera
Cytogenetic Map19p13NCBI
Cx3cl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543315,023,050 - 15,034,711 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543315,023,272 - 15,034,650 (+)NCBIChiLan1.0ChiLan1.0
CX3CL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21866,840,670 - 66,853,297 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11672,761,444 - 72,774,073 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01637,646,447 - 37,659,078 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11656,779,065 - 56,791,760 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1656,779,065 - 56,791,760 (+)Ensemblpanpan1.1panPan2
CX3CL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1259,022,794 - 59,032,095 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,022,794 - 59,032,095 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha255,652,232 - 55,661,533 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,561,127 - 59,570,437 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,559,167 - 59,570,279 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1256,392,704 - 56,402,005 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0257,400,382 - 57,409,687 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0258,293,678 - 58,302,979 (-)NCBIUU_Cfam_GSD_1.0
Cx3cl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934950,134,360 - 50,145,250 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364759,443,733 - 9,455,062 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364759,443,851 - 9,454,715 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CX3CL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1619,312,351 - 19,324,439 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2617,304,118 - 17,315,820 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103233058
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1543,310,711 - 43,323,533 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl543,310,753 - 43,323,529 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604732,993,345 - 33,006,077 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

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RefSeq Transcripts XM_004843169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01026443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH167030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000015070   ⟹   ENSHGLP00000014920
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474628,677,709 - 28,689,122 (-)Ensembl
RefSeq Acc Id: XM_004843169   ⟹   XP_004843226
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474628,677,956 - 28,688,638 (-)NCBI
Protein RefSeqs XP_004843226 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB00654 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014920
RefSeq Acc Id: XP_004843226   ⟸   XM_004843169
- UniProtKB: G5AUE3 (UniProtKB/TrEMBL),   A0AAX6P4B5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000014920   ⟸   ENSHGLT00000015070



1 to 15 of 15 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSHGLG00000010666 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015070 ENTREZGENE
Gene3D-CATH 2.40.50.40 UniProtKB/TrEMBL
InterPro Chemokine_b/g/d UniProtKB/TrEMBL
  Chemokine_IL8-like_dom UniProtKB/TrEMBL
  Interleukin_8-like_sf UniProtKB/TrEMBL
NCBI Gene Cx3cl1 ENTREZGENE
PANTHER FRACTALKINE UniProtKB/TrEMBL
  SMALL INDUCIBLE CYTOKINE A UniProtKB/TrEMBL
Pfam IL8 UniProtKB/TrEMBL
PRINTS FRACTALKINE UniProtKB/TrEMBL
SMART SCY UniProtKB/TrEMBL
Superfamily-SCOP Interleukin 8-like chemokines UniProtKB/TrEMBL
UniProt A0AAX6P4B5 ENTREZGENE, UniProtKB/TrEMBL
  G5AUE3 ENTREZGENE, UniProtKB/TrEMBL
1 to 15 of 15 rows