Ckmt1 (creatine kinase, mitochondrial 1) - Rat Genome Database

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Gene: Ckmt1 (creatine kinase, mitochondrial 1) Rattus norvegicus
Analyze
Symbol: Ckmt1
Name: creatine kinase, mitochondrial 1
RGD ID: 61976
Description: Enables creatine kinase activity and identical protein binding activity. Involved in several processes, including cerebellum development; digestive tract development; and skeletal muscle tissue development. Located in mitochondrial inner-outer membrane contact site and perikaryon. Biomarker of status epilepticus. Orthologous to several human genes including CKMT1B (creatine kinase, mitochondrial 1B); PARTICIPATES IN cardiolipin metabolic pathway; INTERACTS WITH 1-bromopropane; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: acidic-type mitochondrial creatine kinase; Ckmt1b; creatine kinase U-type, mitochondrial; creatine kinase, mitochondrial 1, ubiquitous; creatine kinase, mitochondrial 1B; mia-CK; U-MtCK; ubiquitous mitochondrial creatine kinase
RGD Orthologs
Human
Mouse
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23108,329,859 - 108,335,760 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl3108,330,705 - 108,335,758 (+)Ensembl
Rnor_6.03113,318,559 - 113,324,459 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3113,318,563 - 113,324,461 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03119,858,111 - 119,864,006 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43108,158,887 - 108,163,888 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13108,058,145 - 108,064,001 (+)NCBI
Celera3107,232,840 - 107,237,770 (+)NCBICelera
Cytogenetic Map3q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1939264   PMID:12477932   PMID:14651853   PMID:17634366   PMID:18614015   PMID:18629616   PMID:21370995   PMID:22871113   PMID:23376485   PMID:23620342   PMID:29476059   PMID:32357304  


Genomics

Comparative Map Data
Ckmt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23108,329,859 - 108,335,760 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl3108,330,705 - 108,335,758 (+)Ensembl
Rnor_6.03113,318,559 - 113,324,459 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3113,318,563 - 113,324,461 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03119,858,111 - 119,864,006 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43108,158,887 - 108,163,888 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13108,058,145 - 108,064,001 (+)NCBI
Celera3107,232,840 - 107,237,770 (+)NCBICelera
Cytogenetic Map3q35NCBI
CKMT1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381543,592,857 - 43,599,406 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1543,593,054 - 43,604,901 (+)EnsemblGRCh38hg38GRCh38
GRCh371543,885,055 - 43,891,604 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361541,672,544 - 41,678,896 (+)NCBINCBI36hg18NCBI36
Build 341541,673,545 - 41,678,874NCBI
Celera1520,779,315 - 20,779,894 (+)NCBI
Cytogenetic Map15q15.3NCBI
HuRef1520,807,783 - 20,814,119 (+)NCBIHuRef
CHM1_11544,003,241 - 44,009,651 (+)NCBICHM1_1
T2T-CHM13v2.01541,400,216 - 41,406,765 (+)NCBI
Ckmt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392121,188,254 - 121,194,218 (+)NCBIGRCm39mm39
GRCm39 Ensembl2121,188,195 - 121,194,218 (+)Ensembl
GRCm382121,357,773 - 121,363,737 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2121,357,714 - 121,363,737 (+)EnsemblGRCm38mm10GRCm38
MGSCv372121,184,377 - 121,189,473 (+)NCBIGRCm37mm9NCBIm37
MGSCv362121,050,082 - 121,055,178 (+)NCBImm8
Celera2122,509,569 - 122,514,651 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.37NCBI
LOC103246095
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12639,397,797 - 39,401,046 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366618230,622 - 36,247 (-)NCBIVero_WHO_p1.0

Position Markers
MARC_3102-3103:991936731:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23108,330,997 - 108,331,718 (+)MAPPERmRatBN7.2
Rnor_6.03113,319,697 - 113,320,417NCBIRnor6.0
Rnor_5.03119,859,244 - 119,859,964UniSTSRnor5.0
RGSC_v3.43108,159,128 - 108,159,848UniSTSRGSC3.4
Celera3107,233,081 - 107,233,801UniSTS
Cytogenetic Map3q35UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
1581568Rf53Renal function QTL 53total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
1581546Pur13Proteinuria QTL 132.930.0335total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)380800231114297550Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)396127817115665732Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3102200529115665732Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:43
Count of miRNA genes:42
Interacting mature miRNAs:43
Transcripts:ENSRNOT00000051354
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 56 29 4 10
Low 34 19 3 17 3 8 10 18 6 22 1 8
Below cutoff 6 18 18 18 14

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000051354   ⟹   ENSRNOP00000044253
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3108,330,750 - 108,335,758 (+)Ensembl
Rnor_6.0 Ensembl3113,319,456 - 113,324,457 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089230   ⟹   ENSRNOP00000071371
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3108,330,705 - 108,335,758 (+)Ensembl
Rnor_6.0 Ensembl3113,318,563 - 113,324,461 (+)Ensembl
RefSeq Acc Id: NM_001012738   ⟹   NP_001012756
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23108,330,757 - 108,335,758 (+)NCBI
Rnor_6.03113,319,456 - 113,324,457 (+)NCBI
Rnor_5.03119,858,111 - 119,864,006 (+)NCBI
RGSC_v3.43108,158,887 - 108,163,888 (+)RGD
Celera3107,232,840 - 107,237,770 (+)RGD
Sequence:
RefSeq Acc Id: XM_006234830   ⟹   XP_006234892
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23108,329,859 - 108,335,760 (+)NCBI
Rnor_6.03113,318,559 - 113,324,459 (+)NCBI
Rnor_5.03119,858,111 - 119,864,006 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001012756 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234892 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH91335 (Get FASTA)   NCBI Sequence Viewer  
  EDL79988 (Get FASTA)   NCBI Sequence Viewer  
  P25809 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001012756   ⟸   NM_001012738
- Peptide Label: precursor
- UniProtKB: Q5BJT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234892   ⟸   XM_006234830
- Peptide Label: isoform X1
- UniProtKB: Q5BJT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071371   ⟸   ENSRNOT00000089230
RefSeq Acc Id: ENSRNOP00000044253   ⟸   ENSRNOT00000051354
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P25809-F1-model_v2 AlphaFold P25809 1-418 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692360
Promoter ID:EPDNEW_R2879
Type:multiple initiation site
Name:Ckmt1_1
Description:creatine kinase, mitochondrial 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03113,318,577 - 113,318,637EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
3 113319659 113319660 C T snv GH/OmrMcwi (MCW), FHL/EurMcwi (MCW), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW)
3 113319682 113319683 T C snv GH/OmrMcwi (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW)
3 113319688 113319689 C T snv GH/OmrMcwi (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW)
3 113319803 113319804 C T snv WKY/NCrl (RGD)
3 113320401 113320402 T C snv LL/MavRrrcAek (2020), LH/MavRrrcAek (2020), M520/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), WKY/NCrl (RGD), BXH2/CubMcwi (2020), F344/NCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), M520/NRrrcMcwi (2019)
3 113320413 113320414 A G snv SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), GH/OmrMcwi (MCW), BXH2/CubMcwi (2020), F344/NCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019)
3 113320488 113320489 C T snv CDR, WKY/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), F344/NRrrc (MCW), WKY/N (MCW), MHS/Gib (RGD), ACI/N (2020), BXH2/CubMcwi (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), CDS
3 113320491 113320492 T C snv COP/CrCrl (MCW & UW), WN/N (2020), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/NHsdMcwi (2019), BN/SsN (2020), BUF/N (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), FHH/EurMcwi (2019), FXLE18/Stm (2020), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LN/MavRrrcAek (2020), PVG/Seac (2019), SS/JrHsdMcwi (2019), WKY/NCrl (2019), SBH/Ygl (MCW)
3 113320508 113320509 A G snv BN/NHsdMcwi (2019), BN/NHsdMcwi (2020), BUF/N (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), FHH/EurMcwi (2019), FXLE18/Stm (2020), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LN/MavRrrcAek (2020), M520/N (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WN/N (2020), COP/CrCrl (MCW & UW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), MNS/Gib (RGD), BN-Lx/CubMcwi (2019), BN/SsN (2020)
3 113320509 113320510 C T snv F344/NCrl (2019), F344/N (2020), FHH/EurMcwi (2019), FXLE18/Stm (2020), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LN/MavRrrcAek (2020), M520/N (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WN/N (2020), COP/CrCrl (MCW & UW), SBH/Ygl (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), MNS/Gib (RGD), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/NHsdMcwi (2019), BN/SsN (2020), BUF/N (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019)
3 113320521 113320522 A G snv COP/CrCrl (MCW & UW), WN/N (2020), SBH/Ygl (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/NHsdMcwi (2019), BN/SsN (2020), BUF/N (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LN/MavRrrcAek (2020), M520/N (2020), PVG/Seac (2019), SS/JrHsdMcwi (2019), WKY/NCrl (2019), GH/OmrMcwi (MCW)
3 113320531 113320532 C A snv ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/N (MCW), F344/NRrrc (MCW), M520/N (MCW), MR/N (MCW), WKY/N (MCW), WN/N (MCW)
3 113320533 113320534 C T snv LEXF2B/Stm (2019), LEXF1C/Stm (2019), LN/MavRrrcAek (2020), M520/N (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WN/N (2020), COP/CrCrl (MCW & UW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), BN/NHsdMcwi (2020), BN/NHsdMcwi (2019), BN/SsN (2020), BUF/N (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/NCrl (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF3/Stm (2020)
3 113320559 113320560 G T snv CDR, WKY/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/N (MCW), M520/N (MCW), MR/N (MCW), WKY/N (MCW), WN/N (MCW), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF2B/Stm (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), CDS
3 113320562 113320563 G A snv ACI/EurMcwi (MCW), WKY/NCrl (2019), SS/JrHsdMcwi (MCW), BN/NHsdMcwi (2020), BN/SsN (2020), DA/OlaHsd (2019), F344/NCrl (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), GH/OmrMcwi (MCW)
3 113320774 113320775 C T snv CDR, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), BBDP/Wor (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), CDS
3 113320787 113320788 A T snv WKY/N (2020), WKY/NCrl (2019), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WN/N (2020)
3 113320790 113320791 G T snv M520/N (2020), SHRSP/A3NCrl (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019)
3 113320823 113320824 A C snv WAG/RijCrl (2020), SS/JrHsdMcwi (2019), WKY/N (2020), WN/N (2020), CDR, CDS, SHR/NHsd (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019), SR/JrHsd (2020), WKY/NCrl (2019)
3 113321377 113321378 G C snv COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), MNS/Gib (RGD), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), GH/OmrMcwi (MCW)
3 113321429 113321430 G A snv CDR, CDS, GH/OmrMcwi (MCW), SBN/Ygl (MCW), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/SsN (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WN/N (2020)
3 113321431 113321432 C T snv LEXF2B/Stm (2019), LEXF1C/Stm (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WN/N (2020), CDR, CDS, SBN/Ygl (MCW), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/SsN (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF3/Stm (2020)
3 113321435 113321436 G A snv LEXF3/Stm (2020), LEXF2B/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WN/N (2020), CDR, CDS, SBN/Ygl (MCW), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/SsN (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LE/Stm (2019)
3 113321441 113321442 C T snv CDS, CDR, BN/NHsdMcwi (2020), BN/SsN (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WN/N (2020), BN-Lx/CubMcwi (2019)
3 113321444 113321445 C G snv WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/N (MCW), F344/NRrrc (MCW), WKY/N (MCW), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020)
3 113321446 113321447 G C snv CDR, WN/N (2020), GH/OmrMcwi (MCW), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/SsN (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), CDS
3 113321455 113321456 C G snv CDR, SS/JrHsdMcwi (2019), SBN/Ygl (RGD), BN/SsN (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF2B/Stm (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), CDS
3 113321456 113321457 G A snv CDR, SHR/OlalpcvMcwi (2019), SBN/Ygl (RGD), BN/SsN (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF2B/Stm (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), CDS
3 113321471 113321472 A C snv LE/Stm (2019), LEXF4/Stm (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LH/MavRrrcAek (2020)
3 113321480 113321481 G A snv CDR, SBN/Ygl (RGD), CDS
3 113321494 113321495 G C snv CDR, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), CDS
3 113321495 113321496 C T snv CDS, CDR
3 113321498 113321499 T C snv CDS, CDR
3 113321503 113321504 G A snv CDS
3 113321507 113321508 T G snv CDS
3 113321554 113321555 G A snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), F344/NRrrc (MCW), BBDP/Wor (RGD), LN/MavRrrc (RGD), LL/MavRrrc (RGD), MHS/Gib (RGD), SHR/NHsd (RGD), SHRSP/Gcrc (RGD), WKY/NCrl (RGD), WKY/Gcrc (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), WN/N (2020), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/N (2020), CDS, CDR, F344/Stm (2019)
3 113321596 113321597 G A snv MR/N (MCW), WKY/N (MCW), WN/N (MCW), ACI/EurMcwi (RGD), BBDP/Wor (RGD), LH/MavRrrc (RGD), LN/MavRrrc (RGD), LL/MavRrrc (RGD), MHS/Gib (RGD), SHR/NHsd (RGD), SHRSP/Gcrc (RGD), WKY/Gcrc (RGD), WKY/NHsd (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/N (MCW), F344/NRrrc (MCW), M520/N (MCW)
3 113321630 113321631 G A snv CDR, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), BBDP/Wor (RGD), WKY/Gcrc (RGD), WKY/NHsd (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), CDS
3 113321650 113321651 G T snv LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019)
3 113321654 113321655 C A snv CDR, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), CDS
3 113321790 113321791 G A snv BXH2/CubMcwi (2020), FXLE18/Stm (2020), PVG/Seac (2019), MR/N (2020), HXB4/IpcvMcwi (2020)
3 113321823 113321824 G T snv CDR, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE18/Stm (2020), HXB2/IpcvMcwi (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LL/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019), WKY/N (2020), CDS
3 113321827 113321828 A G snv CDR, PVG/Seac (2019), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/SsN (2020), BUF/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), FXLE18/Stm (2020), HXB10/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEXF3/Stm (2020), LEXF4/Stm (2020), M520/N (2020), MR/N (2020), SBN/Ygl (MCW)
3 113321832 113321833 C T snv CDR, COP/CrCrl (MCW & UW), SS/JrHsdMcwi (MCW), SBN/Ygl (MCW), FHL/EurMcwi (MCW)
3 113321836 113321837 T C snv CDR, PVG/Seac (2019), FHL/EurMcwi (MCW), SBN/Ygl (MCW), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/SsN (2020), BUF/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), FXLE18/Stm (2020), HXB10/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEXF3/Stm (2020), LEXF4/Stm (2020), M520/N (2020), MR/N (2020), COP/CrCrl (MCW & UW)
3 113321844 113321845 A T snv CDR, PVG/Seac (2019), FHL/EurMcwi (MCW), SBN/Ygl (MCW), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/SsN (2020), BUF/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), FXLE18/Stm (2020), HXB10/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEXF3/Stm (2020), LEXF4/Stm (2020), M520/N (2020), MR/N (2020), COP/CrCrl (MCW & UW)
3 113321854 113321855 G A snv SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), ACI/N (2020), BXH2/CubMcwi (2020), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE18/Stm (2020), HXB2/IpcvMcwi (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LN/MavRrrcAek (2020), M520/N (2020), SHRSP/A3NCrl (2019), WKY/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), ACI/EurMcwi (2019)
3 113321856 113321857 G A snv ACI/N (2020), BXH2/CubMcwi (2020), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE18/Stm (2020), HXB2/IpcvMcwi (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LN/MavRrrcAek (2020), M520/N (2020), SHRSP/A3NCrl (2019), WKY/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019)
3 113321871 113321872 G A snv CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), WKY/N (2020), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), BXH2/CubMcwi (2020), LEXF3/Stm (2020), LEXF4/Stm (2020), GH/OmrMcwi (MCW)
3 113323465 113323466 G A snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), WAG/RijCrl (2020), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), GK/FarMcwi (2019), GH/OmrMcwi (MCW)
3 113323473 113323474 G A snv GK/FarMcwi (2019), WAG/RijCrl (2020), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW)
3 113323476 113323477 T C snv WAG/RijCrl (2020), COP/CrCrl (MCW & UW)
3 113323480 113323481 T C snv WAG/RijCrl (2020), COP/CrCrl (MCW & UW)
3 113323507 113323508 T C snv HXB4/IpcvMcwi (2020), DA/OlaHsd (2019), WAG/RijCrl (2020), PVG/Seac (2019)
3 113323508 113323509 G T snv HXB4/IpcvMcwi (2020), DA/OlaHsd (2019), PVG/Seac (2019), WAG/RijCrl (2020)
3 113323512 113323513 T C snv HXB4/IpcvMcwi (2020), DA/OlaHsd (2019)
3 113323540 113323541 G A snv COP/CrCrl (MCW & UW)
3 113323545 113323546 G A snv BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/N (2020), GK/FarMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), SHRSP/A3NCrl (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NHsd (RGD), SHR/NHsd (RGD), LN/MavRrrc (RGD), LEW/Crl (RGD), ACI/N (MCW), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), GH/OmrMcwi (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW)
3 113323790 113323791 C A snv CDR, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), WKY/NHsd (RGD), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), CDS
3 113323800 113323801 G A snv CDR, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), WKY/NHsd (RGD), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), CDS
3 113323850 113323851 T A snv CDR, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), BBDP/Wor (RGD), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF2B/Stm (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/N (2020), CDS
3 113323859 113323860 G A snv LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), BBDP/Wor (RGD), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF2B/Stm (2019)
3 113323868 113323869 G T snv SR/JrHsd (2020), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), WKY/N (2020), WN/N (2020), SS/JrHsdMcwi (2019), SHRSP/A3NCrl (2019), MWF/Hsd (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF2B/Stm (2019), LEXF1A/Stm (2019), LEXF11/Stm (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020)
3 113323877 113323878 G A snv WKY/N (2020), SS/JrHsdMcwi (2019), MWF/Hsd (2019), LH/MavRrrcAek (2020), CDR, LEXF1A/Stm (2019), FHH/EurMcwi (2019), F344/DuCrl (2019), CDS, LE/Stm (2019)
3 113324236 113324237 T A snv SS/JrHsdMcwi (2019), WKY/N (2020), SHRSP/A3NCrl (2019), MWF/Hsd (2019), M520/N (2020), M520/NRrrcMcwi (2019), LN/MavRrrcAek (2020), LL/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF1C/Stm (2019), LEXF1A/Stm (2019), HXB2/IpcvMcwi (2019), F344/Stm (2019), ACI/EurMcwi (2019), SR/JrHsd (MCW), CDS, CDR, SHR/OlalpcvMcwi (2019)
3 113324244 113324245 G C snv WKY/N (2020), SS/JrHsdMcwi (2019), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), MWF/Hsd (2019), M520/N (2020), M520/NRrrcMcwi (2019), LN/MavRrrcAek (2020), LL/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF1C/Stm (2019), LEXF1A/Stm (2019), HXB2/IpcvMcwi (2019), F344/Stm (2019), ACI/EurMcwi (2019), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), ACI/EurMcwi (MCW), CDR, CDS
3 113324261 113324262 T G snv CDR, WKY/N (2020), ACI/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), F344/Stm (2019), HXB2/IpcvMcwi (2019), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), CDS
3 113324271 113324272 C G snv LEXF1A/Stm (2019), LEXF1C/Stm (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), WKY/N (2020), CDR, CDS, ACI/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (RGD), LE/Stm (RGD), ACI/EurMcwi (2019), F344/Stm (2019), HXB2/IpcvMcwi (2019)
3 113324274 113324275 C T snv HXB10/IpcvMcwi (2019), M520/N (2020), LN/MavRrrcAek (2020), BUF/N (2020)
3 113324275 113324276 G A snv BUF/N (2020), M520/N (2020), HXB10/IpcvMcwi (2019), LN/MavRrrcAek (2020)
3 113324293 113324294 A C snv HXB4/IpcvMcwi (2020), HXB10/IpcvMcwi (2019), BUF/N (2020), CDS
3 113324314 113324315 T C snv CDR, WKY/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), LH/MavRrrc (RGD), F344/Stm (2019), LEXF1C/Stm (2019), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), MWF/Hsd (2019), CDS


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
3 119859948 119859949 T C snv DOB/Oda (KyushuU), F344/Jcl (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), HTX/Kyo (KyushuU), LE/Stm (KyushuU), F344/DuCrlCrlj (KyushuU)
3 119859960 119859961 A G snv F344/Jcl (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), RCS/Kyo (KyushuU), HTX/Kyo (KyushuU), LE/Stm (KyushuU), DOB/Oda (KyushuU), F344/DuCrlCrlj (KyushuU)
3 119860035 119860036 C T snv ACI/EurMcwi (MCW), F344/Jcl (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), RCS/Kyo (KyushuU), HTX/Kyo (KyushuU), LE/Stm (KyushuU), F344/DuCrlCrlj (KyushuU), BUF/MNa (KyushuU), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), COP/CrCrl (MCW & UW), DOB/Oda (KyushuU)
3 119860078 119860079 C A snv DOB/Oda (KyushuU), F344/Jcl (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), HTX/Kyo (KyushuU), ACI/EurMcwi (MCW), BUF/MNa (KyushuU), SDLEF7/Barth (UDEL), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), COP/CrCrl (MCW & UW), F344/DuCrlCrlj (KyushuU)
3 119860106 119860107 G T snv DOB/Oda (KyushuU), ACI/EurMcwi (MCW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SDLEF7/Barth (UDEL), BUF/MNa (KyushuU), F344/DuCrlCrlj (KyushuU), HTX/Kyo (KyushuU), F344/Stm (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU)
3 119860321 119860322 C T snv Crl:SD (UDEL), BUF/MNa (KyushuU), F344/DuCrlCrlj (KyushuU), HTX/Kyo (KyushuU), SDLEF7/Barth (UDEL), RCS/Kyo (KyushuU), F344/Stm (KyushuU), LEC/Tj (KyushuU), DOB/Oda (KyushuU), F344/NSlc (KyushuU)
3 119860334 119860335 A T snv DOB/Oda (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), RCS/Kyo (KyushuU), F344/NSlc (KyushuU), HTX/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU), BUF/MNa (KyushuU), SDLEF7/Barth (UDEL), Crl:SD (UDEL)
3 119860337 119860338 G T snv LEC/Tj (KyushuU), DOB/Oda (KyushuU), F344/Stm (KyushuU), RCS/Kyo (KyushuU), F344/NSlc (KyushuU), HTX/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU), BUF/MNa (KyushuU), Crl:SD (UDEL), SDLEF7/Barth (UDEL)
3 119860370 119860371 A C snv DOB/Oda (KyushuU), SDLEF7/Barth (UDEL), Crl:SD (UDEL), BUF/MNa (KyushuU), LEC/Tj (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU)
3 119860924 119860925 G C snv SDLEF7/Barth (UDEL), DOB/Oda (KyushuU), Crl:SD (UDEL), BUF/MNa (KyushuU), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), F344/Stm (KyushuU), F344/Jcl (KyushuU), LEC/Tj (KyushuU)
3 119860991 119860992 C G snv FHL/EurMcwi (MCW), SDLEF7/Barth (UDEL), Crl:SD (UDEL), BUF/MNa (KyushuU), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), F344/Stm (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), DOB/Oda (KyushuU)
3 119861018 119861019 A C snv RCS/Kyo (KyushuU), F344/NSlc (KyushuU), SDLEF7/Barth (UDEL), F344/Stm (KyushuU)
3 119861023 119861024 G C snv F344/Jcl (KyushuU), F344/Stm (KyushuU), RCS/Kyo (KyushuU)
3 119861041 119861042 G C snv F344/Jcl (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), HTX/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU), Crl:SD (UDEL), FHL/EurMcwi (MCW), SDLEF7/Barth (UDEL)
3 119861101 119861102 G A snv GH/OmrMcwi (MCW), FHL/EurMcwi (MCW), COP/CrCrl (MCW & UW), F344/Jcl (KyushuU), F344/Stm (KyushuU), SS/JrHsdMcwi (MCW), F344/NSlc (KyushuU), F344/DuCrlCrlj (KyushuU), Crl:SD (UDEL), SDLEF7/Barth (UDEL), HTX/Kyo (KyushuU)
3 119861143 119861144 G A snv GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), SDLEF7/Barth (UDEL), FHL/EurMcwi (MCW), COP/CrCrl (MCW & UW), DOB/Oda (KyushuU), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), F344/Stm (KyushuU), Crl:SD (UDEL), F344/Jcl (KyushuU), LEC/Tj (KyushuU)
3 119861177 119861178 G A snv DOB/Oda (KyushuU), RCS/Kyo (KyushuU), F344/NSlc (KyushuU), HTX/Kyo (KyushuU), LE/Stm (KyushuU), SDLEF7/Barth (UDEL), GH/OmrMcwi (MCW), FHL/EurMcwi (MCW), LEC/Tj (KyushuU)
3 119861197 119861198 G T snv SDLEF7/Barth (UDEL), LE/Stm (KyushuU), F344/NSlc (KyushuU)
3 119861201 119861202 C A snv SDLEF7/Barth (UDEL), F344/NSlc (KyushuU), LE/Stm (KyushuU)
3 119861370 119861371 G T snv SDLEF7/Barth (UDEL), Crl:SD (UDEL), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/Stm (KyushuU), LEC/Tj (KyushuU), DOB/Oda (KyushuU)
3 119861379 119861380 C G snv F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/Stm (KyushuU), LEC/Tj (KyushuU), DOB/Oda (KyushuU)
3 119861401 119861402 G A snv DOB/Oda (KyushuU), F344/Stm (KyushuU), HTX/Kyo (KyushuU), LE/Stm (KyushuU), Crl:SD (UDEL), SDLEF7/Barth (UDEL)
3 119861403 119861404 G A snv F344/Jcl (KyushuU), DOB/Oda (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), HTX/Kyo (KyushuU), LE/Stm (KyushuU), F344/DuCrlCrlj (KyushuU), SDLEF7/Barth (UDEL), Crl:SD (UDEL)
3 119861418 119861419 G A snv SDLEF7/Barth (UDEL), Crl:SD (UDEL), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/Stm (KyushuU), DOB/Oda (KyushuU)
3 119863012 119863013 G A snv SDLEF7/Barth (UDEL), Crl:SD (UDEL), F344/DuCrlCrlj (KyushuU), HTX/Kyo (KyushuU), DOB/Oda (KyushuU), F344/Stm (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), RCS/Kyo (KyushuU)
3 119863020 119863021 G A snv F344/Jcl (KyushuU), DOB/Oda (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), RCS/Kyo (KyushuU), HTX/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU), BUF/MNa (KyushuU), Crl:SD (UDEL), SDLEF7/Barth (UDEL)
3 119863092 119863093 G A snv F344/Jcl (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), RCS/Kyo (KyushuU), F344/NSlc (KyushuU), SDLEF7/Barth (UDEL), LE/Stm (KyushuU), F344/DuCrlCrlj (KyushuU), BUF/MNa (KyushuU), Crl:SD (UDEL), HTX/Kyo (KyushuU)
3 119863337 119863338 C A snv Crl:SD (UDEL), SDLEF7/Barth (UDEL), BUF/MNa (KyushuU), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), F344/Stm (KyushuU)
3 119863347 119863348 G A snv Crl:SD (UDEL), SDLEF7/Barth (UDEL), BUF/MNa (KyushuU), F344/Stm (KyushuU), RCS/Kyo (KyushuU), HTX/Kyo (KyushuU)
3 119863397 119863398 T A snv SDLEF7/Barth (UDEL), BUF/MNa (KyushuU), RCS/Kyo (KyushuU), F344/NSlc (KyushuU), HTX/Kyo (KyushuU), F344/Stm (KyushuU)
3 119863406 119863407 G A snv SDLEF7/Barth (UDEL), BUF/MNa (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), F344/Stm (KyushuU)
3 119863415 119863416 G T snv SDLEF7/Barth (UDEL), BUF/MNa (KyushuU), HTX/Kyo (KyushuU), F344/Stm (KyushuU)
3 119863783 119863784 T A snv SDLEF7/Barth (UDEL), BUF/MNa (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), DOB/Oda (KyushuU)
3 119863791 119863792 G C snv SDLEF7/Barth (UDEL), BUF/MNa (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), DOB/Oda (KyushuU)
3 119863808 119863809 T G snv LE/Stm (KyushuU), BUF/MNa (KyushuU), SDLEF7/Barth (UDEL), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), DOB/Oda (KyushuU)
3 119863818 119863819 C G snv LE/Stm (KyushuU), BUF/MNa (KyushuU), SDLEF7/Barth (UDEL), HTX/Kyo (KyushuU), DOB/Oda (KyushuU), F344/Jcl (KyushuU), RCS/Kyo (KyushuU)
3 119863861 119863862 T C snv BUF/MNa (KyushuU), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), F344/Jcl (KyushuU), LEC/Tj (KyushuU), RCS/Kyo (KyushuU), DOB/Oda (KyushuU)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
3 108159919 108159920 C T snv SR/JrHsd (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), LCR/2Mco (UMich), SS/JrHsdMcwi (MCW), HCR/1Mco (UMich), COP/CrCrl (MCW & UW), WKY/N (KNAW), F344/NRrrc (KNAW), LCR/1Mco (UMich)
3 108159962 108159963 C A snv WN/N (KNAW), COP/CrCrl (MCW & UW), HCR/1Mco (UMich), LCR/1Mco (UMich), WKY/N (KNAW), MR/N (KNAW), M520/N (KNAW), LE/Stm (KNAW), F344/NRrrc (KNAW), ACI/N (KNAW), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), LCR/2Mco (UMich), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), FHL/EurMcwi (MCW)
3 108159990 108159991 G T snv ACI/EurMcwi (MCW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/N (KNAW), LE/Stm (KNAW), M520/N (KNAW), MR/N (KNAW), WKY/N (KNAW), WN/N (KNAW)
3 108160875 108160876 C G snv FHL/EurMcwi (MCW), F344/NRrrc (KNAW), ACI/N (KNAW), SS/JrHsdMcwi (MCW), WKY/N (KNAW), SR/JrHsd (MCW)
3 108160925 108160926 G C snv FHL/EurMcwi (MCW), SS/JrHsdMcwi (MCW)
3 108160985 108160986 G A snv GH/OmrMcwi (MCW), COP/CrCrl (MCW & UW), LCR/2Mco (UMich), ACI/EurMcwi (MCW), FHL/EurMcwi (MCW), SR/JrHsd (MCW), HCR/2Mco (UMich), F344/NRrrc (KNAW), SS/JrHsdMcwi (MCW)
3 108161027 108161028 G A snv LCR/2Mco (UMich), HCR/2Mco (UMich), GH/OmrMcwi (MCW), COP/CrCrl (MCW & UW), WN/N (KNAW), WKY/N (KNAW), MR/N (KNAW), M520/N (KNAW), LE/Stm (KNAW), F344/NRrrc (KNAW), ACI/N (KNAW), SS/JrHsdMcwi (MCW), FHL/EurMcwi (MCW), ACI/EurMcwi (MCW), LCR/1Mco (UMich)
3 108161061 108161062 G A snv SS/JrHsdMcwi (MCW), LCR/2Mco (UMich), LCR/1Mco (UMich), GH/OmrMcwi (MCW), FHL/EurMcwi (MCW)
3 108162976 108162977 G A snv LE/Stm (KNAW), FHL/EurMcwi (MCW), SS/JrHsdMcwi (MCW), ACI/N (KNAW)
3 108163745 108163746 T C snv FHL/EurMcwi (MCW), SS/JrHsdMcwi (MCW)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
3 108331702 108331703 T C snv LEXF1C/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), WAG/RijCrl (2020), WN/N (2020), BXH2/CubMcwi (2020), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF1A/Stm (2019)
3 108331714 108331715 A G snv LH/MavRrrcAek (2020), M520/NRrrcMcwi (2019), LEXF3/Stm (2020), LEXF2B/Stm (2019), LEXF1C/Stm (2019), LEXF11/Stm (2020), LEW/Crl (2019), HXB2/IpcvMcwi (2019), GK/FarMcwi (2019), FXLE18/Stm (2020), FXLE16/Stm (2020), FHH/EurMcwi (2019), BXH2/CubMcwi (2020), WN/N (2020), WAG/RijCrl (2020), SR/JrHsd (2020), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), MWF/Hsd (2019), M520/N (2020), LE/Stm (2019)
3 108331789 108331790 C T snv LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), LEXF3/Stm (2020), LEXF2B/Stm (2019), LEXF1C/Stm (2019), LEXF1A/Stm (2019), LEXF11/Stm (2020), LEW/Crl (2019), HXB2/IpcvMcwi (2019), GK/FarMcwi (2019), FXLE18/Stm (2020), FXLE16/Stm (2020), FHH/EurMcwi (2019), WN/N (2020), F344/N (2020), F344/NCrl (2019), F344/DuCrl (2019), BXH2/CubMcwi (2020), ACI/N (2020), ACI/EurMcwi (2019), F344/Stm (2019)
3 108331832 108331833 C A snv ACI/EurMcwi (2019), WN/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), ACI/N (2020)
3 108331860 108331861 G T snv SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019)
3 108332075 108332076 C T snv ACI/EurMcwi (2019), WN/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), ACI/N (2020)
3 108332088 108332089 A T snv WKY/N (2020), WN/N (2020), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019)
3 108332091 108332092 G T snv ACI/EurMcwi (2019), WN/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), ACI/N (2020)
3 108332124 108332125 A C snv ACI/EurMcwi (2019), WN/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), ACI/N (2020)
3 108332678 108332679 G C snv BXH2/CubMcwi (2020), ACI/N (2020)
3 108332745 108332746 C G snv ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020)
3 108332772 108332773 A C snv SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019)
3 108332795 108332796 G C snv ACI/EurMcwi (2019), WN/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), ACI/N (2020)
3 108332855 108332856 G A snv ACI/EurMcwi (2019), WN/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), ACI/N (2020)
3 108332897 108332898 G A snv WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019)
3 108332931 108332932 G A snv ACI/EurMcwi (2019), WN/N (2020), F344/DuCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), ACI/N (2020)
3 108332951 108332952 G T snv LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WN/N (2020), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), GK/FarMcwi (2019)
3 108332955 108332956 C A snv ACI/EurMcwi (2019), WN/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), ACI/N (2020)
3 108334766 108334767 G A snv GK/FarMcwi (2019), WAG/RijCrl (2020)
3 108334774 108334775 G A snv GK/FarMcwi (2019), WAG/RijCrl (2020)
3 108334846 108334847 G A snv BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/N (2020), SS/JrHsdMcwi (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), LEXF11/Stm (2020)
3 108335091 108335092 C A snv ACI/EurMcwi (2019), WN/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), ACI/N (2020)
3 108335101 108335102 G A snv F344/DuCrl (2019), WKY/N (2020), WKY/NCrl (2019), WAG/RijCrl (2020), SS/JrHsdMcwi (2019), SR/JrHsd (2020), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), MWF/Hsd (2019), M520/N (2020), M520/NRrrcMcwi (2019), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), LEXF2B/Stm (2019), LEXF1C/Stm (2019),