Ckmt1 (creatine kinase, mitochondrial 1)

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Gene: Ckmt1 (creatine kinase, mitochondrial 1) Rattus norvegicus

Analyze

Symbol:

Ckmt1

Name:

creatine kinase, mitochondrial 1

RGD ID:

61976

Description:

Enables creatine kinase activity and identical protein binding activity. Involved in several processes, including cerebellum development; digestive tract development; and skeletal muscle tissue development. Located in mitochondrial inner-outer membrane contact site and perikaryon. Biomarker of status epilepticus. Orthologous to several human genes including CKMT1B (creatine kinase, mitochondrial 1B); PARTICIPATES IN cardiolipin metabolic pathway; INTERACTS WITH 1-bromopropane; 17alpha-ethynylestradiol; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

acidic-type mitochondrial creatine kinase; Ckmt1b; creatine kinase U-type, mitochondrial; creatine kinase, mitochondrial 1, ubiquitous; creatine kinase, mitochondrial 1B; mia-CK; U-MtCK; ubiquitous mitochondrial creatine kinase

RGD Orthologs

Human

Mouse

Green Monkey

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CKMT1B (creatine kinase, mitochondrial 1B)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Ckmt1 (creatine kinase, mitochondrial 1, ubiquitous)	HGNC	Treefam, OMA, HomoloGene, Panther, Ensembl
Chlorocebus sabaeus (green monkey):	LOC103246095 (creatine kinase U-type, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CKMT1A (creatine kinase, mitochondrial 1A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, OMA, OrthoDB, Treefam
Alliance orthologs ³
Mus musculus (house mouse):	Ckmt1 (creatine kinase, mitochondrial 1, ubiquitous)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	CKMT1B (creatine kinase, mitochondrial 1B)	Alliance	DIOPT (HGNC\|TreeFam)
Homo sapiens (human):	CKMT1A (creatine kinase, mitochondrial 1A)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	ckmt1 (creatine kinase, mitochondrial 1)	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	CG30274	Alliance	DIOPT (PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	CG5144	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|TreeFam)
Caenorhabditis elegans (roundworm):	F32B5.1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	argk-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	Argk	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|TreeFam)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	108,329,859 - 108,335,760 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	3	108,330,705 - 108,335,758 (+)	Ensembl
Rnor_6.0	3	113,318,559 - 113,324,459 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	113,318,563 - 113,324,461 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	119,858,111 - 119,864,006 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	108,158,887 - 108,163,888 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	108,058,145 - 108,064,001 (+)	NCBI
Celera	3	107,232,840 - 107,237,770 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive nonsyndromic deafness 16 (ISO)

Bloom syndrome (ISO)

Brain Injuries (IEP)

colorectal cancer (ISO)

Hearing Loss (ISO)

Sensorineural Deafness and Male Infertility (ISO)

status epilepticus (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

1-bromopropane (EXP)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,5-hexanedione (EXP)

2-acetamidofluorene (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP,ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

amphetamine (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

Brodifacoum (EXP)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

cocaine (EXP)

copper atom (EXP)

copper(0) (EXP)

decabromodiphenyl ether (ISO)

dichlorine (EXP)

diethylstilbestrol (ISO)

dioxygen (ISO)

ethanol (ISO)

etoposide (ISO)

folic acid (ISO)

furan (EXP)

genistein (ISO)

gentamycin (EXP)

isotretinoin (ISO)

methotrexate (ISO)

mitomycin C (ISO)

nicotine (ISO)

ozone (EXP)

paracetamol (EXP)

paraquat (EXP)

PCB138 (EXP)

tamoxifen (ISO)

testosterone (EXP)

titanium dioxide (ISO)

tremolite asbestos (ISO)

trichloroethene (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

brain development (IEP)

cerebellum development (IEP)

digestive tract development (IEP)

kidney development (IEP)

negative regulation of apoptotic process (IEA,ISO)

negative regulation of protein binding (IEA,ISO)

phosphocreatine biosynthetic process (IBA,IEA)

phosphorylation (IEA)

skeletal muscle tissue development (IEP)

Cellular Component

mitochondrial inner membrane (IEA)

mitochondrial inner-outer membrane contact site (IDA)

mitochondrion (IBA,IDA,IEA,ISO)

perikaryon (IDA)

Molecular Function

ATP binding (IEA)

creatine kinase activity (IBA,IDA,IEA)

identical protein binding (IPI)

kinase activity (IBA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

cardiolipin metabolic pathway (ISO)

References

References - curated


1.	Briones TL, etal., Acta Neuropathol Commun. 2013 Sep 6;1:57. doi: 10.1186/2051-5960-1-57.
2.	Chen L, etal., J Comp Neurol. 1995 Dec 18;363(3):389-401.
3.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Kernec F, etal., Mol Cell Biochem. 1999 Apr;194(1-2):165-71.
5.	Kim DW, etal., BMC Neurosci. 2010 Oct 28;11:141. doi: 10.1186/1471-2202-11-141.
6.	Kottke M, etal., Biochim Biophys Acta. 1991 Jan 30;1061(2):215-25.
7.	MGD data from the GO Consortium
8.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
9.	Payne RM and Strauss AW, Biochim Biophys Acta. 1994 Sep 13;1219(1):33-8.
10.	Payne RM, etal., Biochim Biophys Acta 1991 Jul 23;1089(3):352-61.
11.	Ren M, etal., Prog Lipid Res. 2014 Jul;55:1-16. doi: 10.1016/j.plipres.2014.04.001. Epub 2014 Apr 24.
12.	RGD automated data pipeline
13.	RGD automated import pipeline for gene-chemical interactions
14.	Shen W, etal., Biochem J 2002 Oct 15;367(Pt 2):369-80.

Additional References at PubMed

PMID:1939264	PMID:12477932	PMID:14651853	PMID:17634366	PMID:18614015	PMID:18629616	PMID:21370995	PMID:22871113	PMID:23376485	PMID:23620342	PMID:29476059	PMID:32357304

Genomics

Comparative Map Data

Ckmt1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	108,329,859 - 108,335,760 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	3	108,330,705 - 108,335,758 (+)	Ensembl
Rnor_6.0	3	113,318,559 - 113,324,459 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	113,318,563 - 113,324,461 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	119,858,111 - 119,864,006 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	108,158,887 - 108,163,888 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	108,058,145 - 108,064,001 (+)	NCBI
Celera	3	107,232,840 - 107,237,770 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

CKMT1B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	43,592,857 - 43,599,406 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	15	43,593,054 - 43,604,901 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	43,885,055 - 43,891,604 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	41,672,544 - 41,678,896 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	15	41,673,545 - 41,678,874	NCBI
Celera	15	20,779,315 - 20,779,894 (+)	NCBI
Cytogenetic Map	15	q15.3	NCBI
HuRef	15	20,807,783 - 20,814,119 (+)	NCBI		HuRef
CHM1_1	15	44,003,241 - 44,009,651 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	41,400,216 - 41,406,765 (+)	NCBI

Ckmt1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	121,188,254 - 121,194,218 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	2	121,188,195 - 121,194,218 (+)	Ensembl
GRCm38	2	121,357,773 - 121,363,737 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	121,357,714 - 121,363,737 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	121,184,377 - 121,189,473 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	121,050,082 - 121,055,178 (+)	NCBI			mm8
Celera	2	122,509,569 - 122,514,651 (+)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI
cM Map	2	60.37	NCBI

LOC103246095
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	39,397,797 - 39,401,046 (-)	NCBI	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666182	30,622 - 36,247 (-)	NCBI	Vero_WHO_p1.0

Position Markers

MARC_3102-3103:991936731:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	108,330,997 - 108,331,718 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	113,319,697 - 113,320,417	NCBI	Rnor6.0
Rnor_5.0	3	119,859,244 - 119,859,964	UniSTS	Rnor5.0
RGSC_v3.4	3	108,159,128 - 108,159,848	UniSTS	RGSC3.4
Celera	3	107,233,081 - 107,233,801	UniSTS
Cytogenetic Map	3	q35	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	50437504	115638231	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	115665732	Rat
1581568	Rf53	Renal function QTL 53			total urine protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	64655305	115665732	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	64655305	115665732	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	73376539	118376539	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	total urine protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	80800231	114297550	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	89772419	134772419	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	91797474	136797474	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	95735366	140735366	Rat
1582219	Bw63	Body weight QTL 63	3.8	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	3	96127817	115665732	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	97084464	142084464	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
1582216	Bw65	Body weight QTL 65	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	102200529	115665732	Rat
619618	Rf3	Renal disease susceptibility QTL 3	6.5	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate to body weight ratio (CMO:0001270)	3	107693393	152693393	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	43
Count of miRNA genes:	42
Interacting mature miRNAs:	43
Transcripts:	ENSRNOT00000051354
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3								56	29	4	10
Low		34	19	3	17	3	8	10	18	6	22	1	8
Below cutoff		6	18	18		18					14

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC116071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC091335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000051354 ⟹ ENSRNOP00000044253

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	108,330,750 - 108,335,758 (+)	Ensembl
Rnor_6.0 Ensembl	3	113,319,456 - 113,324,457 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000089230 ⟹ ENSRNOP00000071371

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	108,330,705 - 108,335,758 (+)	Ensembl
Rnor_6.0 Ensembl	3	113,318,563 - 113,324,461 (+)	Ensembl

RefSeq Acc Id:

NM_001012738 ⟹ NP_001012756

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	108,330,757 - 108,335,758 (+)	NCBI
Rnor_6.0	3	113,319,456 - 113,324,457 (+)	NCBI
Rnor_5.0	3	119,858,111 - 119,864,006 (+)	NCBI
RGSC_v3.4	3	108,158,887 - 108,163,888 (+)	RGD
Celera	3	107,232,840 - 107,237,770 (+)	RGD

Sequence:

show sequence

CTGGCCGCTTGCTTGCTGCGCTTCTCCTGCAGCCTGGTAGGCACTGGCTGCTACTTCAGCTTCA
GCCTTCGTCGCGACCCCTATTTTGGCTCCAGTCTCCGACCCTGCTCCGTCCTCTCTCTACTTGG
TTGCATCCTCCCTCCTAGTTCCAGATTTGCGCCAGATCCTGCTCCAAATCCGGTAGCCGCATCC
CCAAGCCATGGCTGGTCCCTTCTCCCGTCTGCTGTCTGCCCGCCCCGGACTCAAGCTCCTGGCT
TTGGCTGGAGCTGGGTCTCTCGCCGCCGGGATTCTGCTCCGTCCGGAATCTGTACGAGCGGCCA
CCGGTGAACGGAGGAGACTGTATCCCCCGAGCGCTGAGTACCCAGACCTCCGAAAGCACAACAA
CTGCATGGCCAGTCACCTGACCCCAGCAGTCTATGCACGGCTCTGCGACAAGACCACACCCACT
GGCTGGACACTAGATCAGTGCATCCAGACTGGAGTGGACAACCCTGGCCACCCCTTCATCAAGA
CTGTGGGCATGGTGGCTGGAGATGAGGAGACCTATGAGGTATTTGCCGAACTGTTTGACCCTGT
GATCCAAGAGCGGCATAATGGATATGACCCTAGAACAATGAAGCACACCACTGACCTTGATGCC
AGCAAAATCCGTTCTGGCTACTTTGATGAGAGGTACGTATTGTCCTCAAGAGTCAGAACTGGCC
GAAGTATCAGGGGACTCAGTCTCCCTCCAGCCTGCACTCGGGCAGAGCGACGAGAGGTGGAGCG
TGTTGTGGTGGACGCGCTGAGTGGCCTGAAGGGCGACCTGGCTGGACGGTACTACAGGCTCAGT
GAGATGACAGAGGCTGAGCAGCAGCAGCTTATTGACGACCATTTCCTGTTTGATAAACCTGTGT
CCCCATTGCTGACAGCAGCAGGCATGGCTCGAGACTGGCCAGATGCCCGAGGAATCTGGCACAA
CAATGAGAAGAGTTTCTTGATCTGGGTGAATGAGGAGGACCACACACGGGTCATCTCTATGGAG
AAAGGCGGCAACATGAAGAGAGTGTTTGAAAGATTCTGCCGGGGCCTCAAAGAGGTGGAGAAGC
TGATCCAGGAACGAGGCTGGGAGTTCATGTGGAATGAGCGTTTAGGATACATCTTGACCTGTCC
ATCTAACCTGGGCACTGGACTTCGGGCAGGAGTACACGTCAAACTGCCACTGCTAAGCAAAGAT
AGCCGCTTCCCAAAGATCCTGGAGAACCTAAGGCTGCAAAAGCGTGGGACTGGAGGAGTGGACA
CGGCTGCCACAGGCAGTGTCTTTGACATCTCTAATCTGGATCGACTTGGCAAGTCAGAGGTGGA
GCTGGTGCAGCTGGTCATCGATGGGGTGAACTATTTGATTGACTGTGAACGGCGTCTGGAGAAA
GGACAGGATATTCGAATCCCTCCACCTCTTGTCCACGGCAAACATTAACTCCCCGTTCCCAGCA
GATGAATCAAGATTCCCCAGGACTTCTGCATATTTAACAGTGGCCCATTCTACTTGCCAAGGAC
CTGCCTCTCAATCCCTGTCCTAGTAAAGACTCCACGTTCTGTTGAAAAAAAAAAAAAAAAAAAA
AAAAAAA

hide sequence

RefSeq Acc Id:

XM_006234830 ⟹ XP_006234892

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	108,329,859 - 108,335,760 (+)	NCBI
Rnor_6.0	3	113,318,559 - 113,324,459 (+)	NCBI
Rnor_5.0	3	119,858,111 - 119,864,006 (+)	NCBI

Sequence:

show sequence

TCCAGTCCAGGAACTGCCAGCTGCAGAGAAGGAAGAGAAGGAAGGAGAAACTCACCATTCCCTG
CCCAACCCCAGCCCCACACCCAGAGCAATCAACAGTTCCAGATTTGCGCCAGATCCTGCTCCAA
ATCCGGTAGCCGCATCCCCAAGCCATGGCTGGTCCCTTCTCCCGTCTGCTGTCTGCCCGCCCCG
GACTCAAGCTCCTGGCTTTGGCTGGAGCTGGGTCTCTCGCCGCCGGGATTCTGCTCCGTCCGGA
ATCTGTACGAGCGGCCACCGGTGAACGGAGGAGACTGTATCCCCCGAGCGCTGAGTACCCAGAC
CTCCGAAAGCACAACAACTGCATGGCCAGTCACCTGACCCCAGCAGTCTATGCACGGCTCTGCG
ACAAGACCACACCCACTGGCTGGACACTAGATCAGTGCATCCAGACTGGAGTGGACAACCCTGG
CCACCCCTTCATCAAGACTGTGGGCATGGTGGCTGGAGATGAGGAGACCTATGAGGTATTTGCC
GAACTGTTTGACCCTGTGATCCAAGAGCGGCATAATGGATATGACCCTAGAACAATGAAGCACA
CCACTGACCTTGATGCCAGCAAAATCCGTTCTGGCTACTTTGATGAGAGGTACGTATTGTCCTC
AAGAGTCAGAACTGGCCGAAGTATCAGGGGACTCAGTCTCCCTCCAGCCTGCACTCGGGCAGAG
CGACGAGAGGTGGAGCGTGTTGTGGTGGACGCGCTGAGTGGCCTGAAGGGCGACCTGGCTGGAC
GGTACTACAGGCTCAGTGAGATGACAGAGGCTGAGCAGCAGCAGCTTATTGACGACCATTTCCT
GTTTGATAAACCTGTGTCCCCATTGCTGACAGCAGCAGGCATGGCTCGAGACTGGCCAGATGCC
CGAGGAATCTGGCACAACAATGAGAAGAGTTTCTTGATCTGGGTGAATGAGGAGGACCACACAC
GGGTCATCTCTATGGAGAAAGGCGGCAACATGAAGAGAGTGTTTGAAAGATTCTGCCGGGGCCT
CAAAGAGGTGGAGAAGCTGATCCAGGAACGAGGCTGGGAGTTCATGTGGAATGAGCGTTTAGGA
TACATCTTGACCTGTCCATCTAACCTGGGCACTGGACTTCGGGCAGGAGTACACGTCAAACTGC
CACTGCTAAGCAAAGATAGCCGCTTCCCAAAGATCCTGGAGAACCTAAGGCTGCAAAAGCGTGG
GACTGGAGGAGTGGACACGGCTGCCACAGGCAGTGTCTTTGACATCTCTAATCTGGATCGACTT
GGCAAGTCAGAGGTGGAGCTGGTGCAGCTGGTCATCGATGGGGTGAACTATTTGATTGACTGTG
AACGGCGTCTGGAGAAAGGACAGGATATTCGAATCCCTCCACCTCTTGTCCACGGCAAACATTA
ACTCCCCGTTCCCAGCAGATGAATCAAGATTCCCCAGGACTTCTGCATATTTAACAGTGGCCCA
TTCTACTTGCCAAGGACCTGCCTCTCAATCCCTGTCCTAGTAAAGACTCCACGTTCTGTTGCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001012756	(Get FASTA)	NCBI Sequence Viewer
	XP_006234892	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH91335	(Get FASTA)	NCBI Sequence Viewer
	EDL79988	(Get FASTA)	NCBI Sequence Viewer
	P25809	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001012756 ⟸ NM_001012738
- Peptide Label:	precursor
- UniProtKB:	Q5BJT9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGPFSRLLSARPGLKLLALAGAGSLAAGILLRPESVRAATGERRRLYPPSAEYPDLRKHNNCM ASHLTPAVYARLCDKTTPTGWTLDQCIQTGVDNPGHPFIKTVGMVAGDEETYEVFAELFDPVIQ ERHNGYDPRTMKHTTDLDASKIRSGYFDERYVLSSRVRTGRSIRGLSLPPACTRAERREVERVV VDALSGLKGDLAGRYYRLSEMTEAEQQQLIDDHFLFDKPVSPLLTAAGMARDWPDARGIWHNNE KSFLIWVNEEDHTRVISMEKGGNMKRVFERFCRGLKEVEKLIQERGWEFMWNERLGYILTCPSN LGTGLRAGVHVKLPLLSKDSRFPKILENLRLQKRGTGGVDTAATGSVFDISNLDRLGKSEVELV QLVIDGVNYLIDCERRLEKGQDIRIPPPLVHGKH hide sequence

RefSeq Acc Id:	XP_006234892 ⟸ XM_006234830
- Peptide Label:	isoform X1
- UniProtKB:	Q5BJT9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGPFSRLLSARPGLKLLALAGAGSLAAGILLRPESVRAATGERRRLYPPSAEYPDLRKHNNCM ASHLTPAVYARLCDKTTPTGWTLDQCIQTGVDNPGHPFIKTVGMVAGDEETYEVFAELFDPVIQ ERHNGYDPRTMKHTTDLDASKIRSGYFDERYVLSSRVRTGRSIRGLSLPPACTRAERREVERVV VDALSGLKGDLAGRYYRLSEMTEAEQQQLIDDHFLFDKPVSPLLTAAGMARDWPDARGIWHNNE KSFLIWVNEEDHTRVISMEKGGNMKRVFERFCRGLKEVEKLIQERGWEFMWNERLGYILTCPSN LGTGLRAGVHVKLPLLSKDSRFPKILENLRLQKRGTGGVDTAATGSVFDISNLDRLGKSEVELV QLVIDGVNYLIDCERRLEKGQDIRIPPPLVHGKH hide sequence

RefSeq Acc Id:

ENSRNOP00000071371 ⟸ ENSRNOT00000089230

RefSeq Acc Id:

ENSRNOP00000044253 ⟸ ENSRNOT00000051354

Protein Domains

Phosphagen kinase C-terminal Phosphagen kinase N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P25809-F1-model_v2	AlphaFold	P25809	1-418	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692360

Promoter ID:

EPDNEW_R2879

Type:

multiple initiation site

Name:

Ckmt1_1

Description:

creatine kinase, mitochondrial 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	113,318,577 - 113,318,637	EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)

ACI/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN-Lx/CubMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BUF/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

DA/OlaHsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE16/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/FarMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB10/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF10A/StmMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/NRrrcMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MWF/Hsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHR/OlalpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WAG/RijCrl (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Damaging Variants

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
3	113319659	113319660	C	T	snv	GH/OmrMcwi (MCW), FHL/EurMcwi (MCW), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW)
3	113319682	113319683	T	C	snv	GH/OmrMcwi (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW)
3	113319688	113319689	C	T	snv	GH/OmrMcwi (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW)
3	113319803	113319804	C	T	snv	WKY/NCrl (RGD)
3	113320401	113320402	T	C	snv	LL/MavRrrcAek (2020), LH/MavRrrcAek (2020), M520/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), WKY/NCrl (RGD), BXH2/CubMcwi (2020), F344/NCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), M520/NRrrcMcwi (2019)
3	113320413	113320414	A	G	snv	SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), GH/OmrMcwi (MCW), BXH2/CubMcwi (2020), F344/NCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019)
3	113320488	113320489	C	T	snv	CDR, WKY/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), F344/NRrrc (MCW), WKY/N (MCW), MHS/Gib (RGD), ACI/N (2020), BXH2/CubMcwi (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), CDS
3	113320491	113320492	T	C	snv	COP/CrCrl (MCW & UW), WN/N (2020), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/NHsdMcwi (2019), BN/SsN (2020), BUF/N (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), FHH/EurMcwi (2019), FXLE18/Stm (2020), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LN/MavRrrcAek (2020), PVG/Seac (2019), SS/JrHsdMcwi (2019), WKY/NCrl (2019), SBH/Ygl (MCW)
3	113320508	113320509	A	G	snv	BN/NHsdMcwi (2019), BN/NHsdMcwi (2020), BUF/N (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), FHH/EurMcwi (2019), FXLE18/Stm (2020), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LN/MavRrrcAek (2020), M520/N (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WN/N (2020), COP/CrCrl (MCW & UW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), MNS/Gib (RGD), BN-Lx/CubMcwi (2019), BN/SsN (2020)
3	113320509	113320510	C	T	snv	F344/NCrl (2019), F344/N (2020), FHH/EurMcwi (2019), FXLE18/Stm (2020), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LN/MavRrrcAek (2020), M520/N (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WN/N (2020), COP/CrCrl (MCW & UW), SBH/Ygl (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), MNS/Gib (RGD), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/NHsdMcwi (2019), BN/SsN (2020), BUF/N (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019)
3	113320521	113320522	A	G	snv	COP/CrCrl (MCW & UW), WN/N (2020), SBH/Ygl (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/NHsdMcwi (2019), BN/SsN (2020), BUF/N (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LN/MavRrrcAek (2020), M520/N (2020), PVG/Seac (2019), SS/JrHsdMcwi (2019), WKY/NCrl (2019), GH/OmrMcwi (MCW)
3	113320531	113320532	C	A	snv	ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/N (MCW), F344/NRrrc (MCW), M520/N (MCW), MR/N (MCW), WKY/N (MCW), WN/N (MCW)
3	113320533	113320534	C	T	snv	LEXF2B/Stm (2019), LEXF1C/Stm (2019), LN/MavRrrcAek (2020), M520/N (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WN/N (2020), COP/CrCrl (MCW & UW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), BN/NHsdMcwi (2020), BN/NHsdMcwi (2019), BN/SsN (2020), BUF/N (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/NCrl (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF3/Stm (2020)
3	113320559	113320560	G	T	snv	CDR, WKY/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/N (MCW), M520/N (MCW), MR/N (MCW), WKY/N (MCW), WN/N (MCW), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF2B/Stm (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), CDS
3	113320562	113320563	G	A	snv	ACI/EurMcwi (MCW), WKY/NCrl (2019), SS/JrHsdMcwi (MCW), BN/NHsdMcwi (2020), BN/SsN (2020), DA/OlaHsd (2019), F344/NCrl (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), GH/OmrMcwi (MCW)
3	113320774	113320775	C	T	snv	CDR, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), BBDP/Wor (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), CDS
3	113320787	113320788	A	T	snv	WKY/N (2020), WKY/NCrl (2019), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WN/N (2020)
3	113320790	113320791	G	T	snv	M520/N (2020), SHRSP/A3NCrl (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019)
3	113320823	113320824	A	C	snv	WAG/RijCrl (2020), SS/JrHsdMcwi (2019), WKY/N (2020), WN/N (2020), CDR, CDS, SHR/NHsd (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019), SR/JrHsd (2020), WKY/NCrl (2019)
3	113321377	113321378	G	C	snv	COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), MNS/Gib (RGD), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), GH/OmrMcwi (MCW)
3	113321429	113321430	G	A	snv	CDR, CDS, GH/OmrMcwi (MCW), SBN/Ygl (MCW), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/SsN (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WN/N (2020)
3	113321431	113321432	C	T	snv	LEXF2B/Stm (2019), LEXF1C/Stm (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WN/N (2020), CDR, CDS, SBN/Ygl (MCW), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/SsN (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF3/Stm (2020)
3	113321435	113321436	G	A	snv	LEXF3/Stm (2020), LEXF2B/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WN/N (2020), CDR, CDS, SBN/Ygl (MCW), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/SsN (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LE/Stm (2019)
3	113321441	113321442	C	T	snv	CDS, CDR, BN/NHsdMcwi (2020), BN/SsN (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WN/N (2020), BN-Lx/CubMcwi (2019)
3	113321444	113321445	C	G	snv	WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/N (MCW), F344/NRrrc (MCW), WKY/N (MCW), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020)
3	113321446	113321447	G	C	snv	CDR, WN/N (2020), GH/OmrMcwi (MCW), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/SsN (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), CDS
3	113321455	113321456	C	G	snv	CDR, SS/JrHsdMcwi (2019), SBN/Ygl (RGD), BN/SsN (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF2B/Stm (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), CDS
3	113321456	113321457	G	A	snv	CDR, SHR/OlalpcvMcwi (2019), SBN/Ygl (RGD), BN/SsN (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF2B/Stm (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), CDS
3	113321471	113321472	A	C	snv	LE/Stm (2019), LEXF4/Stm (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LH/MavRrrcAek (2020)
3	113321480	113321481	G	A	snv	CDR, SBN/Ygl (RGD), CDS
3	113321494	113321495	G	C	snv	CDR, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), CDS
3	113321495	113321496	C	T	snv	CDS, CDR
3	113321498	113321499	T	C	snv	CDS, CDR
3	113321503	113321504	G	A	snv	CDS
3	113321507	113321508	T	G	snv	CDS
3	113321554	113321555	G	A	snv	ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), F344/NRrrc (MCW), BBDP/Wor (RGD), LN/MavRrrc (RGD), LL/MavRrrc (RGD), MHS/Gib (RGD), SHR/NHsd (RGD), SHRSP/Gcrc (RGD), WKY/NCrl (RGD), WKY/Gcrc (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), WN/N (2020), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/N (2020), CDS, CDR, F344/Stm (2019)
3	113321596	113321597	G	A	snv	MR/N (MCW), WKY/N (MCW), WN/N (MCW), ACI/EurMcwi (RGD), BBDP/Wor (RGD), LH/MavRrrc (RGD), LN/MavRrrc (RGD), LL/MavRrrc (RGD), MHS/Gib (RGD), SHR/NHsd (RGD), SHRSP/Gcrc (RGD), WKY/Gcrc (RGD), WKY/NHsd (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/N (MCW), F344/NRrrc (MCW), M520/N (MCW)
3	113321630	113321631	G	A	snv	CDR, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), BBDP/Wor (RGD), WKY/Gcrc (RGD), WKY/NHsd (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), CDS
3	113321650	113321651	G	T	snv	LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019)
3	113321654	113321655	C	A	snv	CDR, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), CDS
3	113321790	113321791	G	A	snv	BXH2/CubMcwi (2020), FXLE18/Stm (2020), PVG/Seac (2019), MR/N (2020), HXB4/IpcvMcwi (2020)
3	113321823	113321824	G	T	snv	CDR, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE18/Stm (2020), HXB2/IpcvMcwi (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LL/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019), WKY/N (2020), CDS
3	113321827	113321828	A	G	snv	CDR, PVG/Seac (2019), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/SsN (2020), BUF/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), FXLE18/Stm (2020), HXB10/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEXF3/Stm (2020), LEXF4/Stm (2020), M520/N (2020), MR/N (2020), SBN/Ygl (MCW)
3	113321832	113321833	C	T	snv	CDR, COP/CrCrl (MCW & UW), SS/JrHsdMcwi (MCW), SBN/Ygl (MCW), FHL/EurMcwi (MCW)
3	113321836	113321837	T	C	snv	CDR, PVG/Seac (2019), FHL/EurMcwi (MCW), SBN/Ygl (MCW), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/SsN (2020), BUF/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), FXLE18/Stm (2020), HXB10/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEXF3/Stm (2020), LEXF4/Stm (2020), M520/N (2020), MR/N (2020), COP/CrCrl (MCW & UW)
3	113321844	113321845	A	T	snv	CDR, PVG/Seac (2019), FHL/EurMcwi (MCW), SBN/Ygl (MCW), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/SsN (2020), BUF/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), FXLE18/Stm (2020), HXB10/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEXF3/Stm (2020), LEXF4/Stm (2020), M520/N (2020), MR/N (2020), COP/CrCrl (MCW & UW)
3	113321854	113321855	G	A	snv	SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), ACI/N (2020), BXH2/CubMcwi (2020), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE18/Stm (2020), HXB2/IpcvMcwi (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LN/MavRrrcAek (2020), M520/N (2020), SHRSP/A3NCrl (2019), WKY/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), ACI/EurMcwi (2019)
3	113321856	113321857	G	A	snv	ACI/N (2020), BXH2/CubMcwi (2020), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE18/Stm (2020), HXB2/IpcvMcwi (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LN/MavRrrcAek (2020), M520/N (2020), SHRSP/A3NCrl (2019), WKY/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019)
3	113321871	113321872	G	A	snv	CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), WKY/N (2020), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), BXH2/CubMcwi (2020), LEXF3/Stm (2020), LEXF4/Stm (2020), GH/OmrMcwi (MCW)
3	113323465	113323466	G	A	snv	ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), WAG/RijCrl (2020), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), GK/FarMcwi (2019), GH/OmrMcwi (MCW)
3	113323473	113323474	G	A	snv	GK/FarMcwi (2019), WAG/RijCrl (2020), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW)
3	113323476	113323477	T	C	snv	WAG/RijCrl (2020), COP/CrCrl (MCW & UW)
3	113323480	113323481	T	C	snv	WAG/RijCrl (2020), COP/CrCrl (MCW & UW)
3	113323507	113323508	T	C	snv	HXB4/IpcvMcwi (2020), DA/OlaHsd (2019), WAG/RijCrl (2020), PVG/Seac (2019)
3	113323508	113323509	G	T	snv	HXB4/IpcvMcwi (2020), DA/OlaHsd (2019), PVG/Seac (2019), WAG/RijCrl (2020)
3	113323512	113323513	T	C	snv	HXB4/IpcvMcwi (2020), DA/OlaHsd (2019)
3	113323540	113323541	G	A	snv	COP/CrCrl (MCW & UW)
3	113323545	113323546	G	A	snv	BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/N (2020), GK/FarMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), SHRSP/A3NCrl (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NHsd (RGD), SHR/NHsd (RGD), LN/MavRrrc (RGD), LEW/Crl (RGD), ACI/N (MCW), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), GH/OmrMcwi (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW)
3	113323790	113323791	C	A	snv	CDR, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), WKY/NHsd (RGD), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), CDS
3	113323800	113323801	G	A	snv	CDR, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), WKY/NHsd (RGD), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), CDS
3	113323850	113323851	T	A	snv	CDR, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), BBDP/Wor (RGD), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF2B/Stm (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/N (2020), CDS
3	113323859	113323860	G	A	snv	LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), BBDP/Wor (RGD), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF2B/Stm (2019)
3	113323868	113323869	G	T	snv	SR/JrHsd (2020), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), WKY/N (2020), WN/N (2020), SS/JrHsdMcwi (2019), SHRSP/A3NCrl (2019), MWF/Hsd (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF2B/Stm (2019), LEXF1A/Stm (2019), LEXF11/Stm (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020)
3	113323877	113323878	G	A	snv	WKY/N (2020), SS/JrHsdMcwi (2019), MWF/Hsd (2019), LH/MavRrrcAek (2020), CDR, LEXF1A/Stm (2019), FHH/EurMcwi (2019), F344/DuCrl (2019), CDS, LE/Stm (2019)
3	113324236	113324237	T	A	snv	SS/JrHsdMcwi (2019), WKY/N (2020), SHRSP/A3NCrl (2019), MWF/Hsd (2019), M520/N (2020), M520/NRrrcMcwi (2019), LN/MavRrrcAek (2020), LL/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF1C/Stm (2019), LEXF1A/Stm (2019), HXB2/IpcvMcwi (2019), F344/Stm (2019), ACI/EurMcwi (2019), SR/JrHsd (MCW), CDS, CDR, SHR/OlalpcvMcwi (2019)
3	113324244	113324245	G	C	snv	WKY/N (2020), SS/JrHsdMcwi (2019), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), MWF/Hsd (2019), M520/N (2020), M520/NRrrcMcwi (2019), LN/MavRrrcAek (2020), LL/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF1C/Stm (2019), LEXF1A/Stm (2019), HXB2/IpcvMcwi (2019), F344/Stm (2019), ACI/EurMcwi (2019), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), ACI/EurMcwi (MCW), CDR, CDS
3	113324261	113324262	T	G	snv	CDR, WKY/N (2020), ACI/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), F344/Stm (2019), HXB2/IpcvMcwi (2019), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), CDS
3	113324271	113324272	C	G	snv	LEXF1A/Stm (2019), LEXF1C/Stm (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), WKY/N (2020), CDR, CDS, ACI/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (RGD), LE/Stm (RGD), ACI/EurMcwi (2019), F344/Stm (2019), HXB2/IpcvMcwi (2019)
3	113324274	113324275	C	T	snv	HXB10/IpcvMcwi (2019), M520/N (2020), LN/MavRrrcAek (2020), BUF/N (2020)
3	113324275	113324276	G	A	snv	BUF/N (2020), M520/N (2020), HXB10/IpcvMcwi (2019), LN/MavRrrcAek (2020)
3	113324293	113324294	A	C	snv	HXB4/IpcvMcwi (2020), HXB10/IpcvMcwi (2019), BUF/N (2020), CDS
3	113324314	113324315	T	C	snv	CDR, WKY/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), LH/MavRrrc (RGD), F344/Stm (2019), LEXF1C/Stm (2019), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), MWF/Hsd (2019), CDS

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
3	119859948	119859949	T	C	snv	DOB/Oda (KyushuU), F344/Jcl (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), HTX/Kyo (KyushuU), LE/Stm (KyushuU), F344/DuCrlCrlj (KyushuU)
3	119859960	119859961	A	G	snv	F344/Jcl (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), RCS/Kyo (KyushuU), HTX/Kyo (KyushuU), LE/Stm (KyushuU), DOB/Oda (KyushuU), F344/DuCrlCrlj (KyushuU)
3	119860035	119860036	C	T	snv	ACI/EurMcwi (MCW), F344/Jcl (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), RCS/Kyo (KyushuU), HTX/Kyo (KyushuU), LE/Stm (KyushuU), F344/DuCrlCrlj (KyushuU), BUF/MNa (KyushuU), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), COP/CrCrl (MCW & UW), DOB/Oda (KyushuU)
3	119860078	119860079	C	A	snv	DOB/Oda (KyushuU), F344/Jcl (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), HTX/Kyo (KyushuU), ACI/EurMcwi (MCW), BUF/MNa (KyushuU), SDLEF7/Barth (UDEL), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), COP/CrCrl (MCW & UW), F344/DuCrlCrlj (KyushuU)
3	119860106	119860107	G	T	snv	DOB/Oda (KyushuU), ACI/EurMcwi (MCW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SDLEF7/Barth (UDEL), BUF/MNa (KyushuU), F344/DuCrlCrlj (KyushuU), HTX/Kyo (KyushuU), F344/Stm (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU)
3	119860321	119860322	C	T	snv	Crl:SD (UDEL), BUF/MNa (KyushuU), F344/DuCrlCrlj (KyushuU), HTX/Kyo (KyushuU), SDLEF7/Barth (UDEL), RCS/Kyo (KyushuU), F344/Stm (KyushuU), LEC/Tj (KyushuU), DOB/Oda (KyushuU), F344/NSlc (KyushuU)
3	119860334	119860335	A	T	snv	DOB/Oda (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), RCS/Kyo (KyushuU), F344/NSlc (KyushuU), HTX/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU), BUF/MNa (KyushuU), SDLEF7/Barth (UDEL), Crl:SD (UDEL)
3	119860337	119860338	G	T	snv	LEC/Tj (KyushuU), DOB/Oda (KyushuU), F344/Stm (KyushuU), RCS/Kyo (KyushuU), F344/NSlc (KyushuU), HTX/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU), BUF/MNa (KyushuU), Crl:SD (UDEL), SDLEF7/Barth (UDEL)
3	119860370	119860371	A	C	snv	DOB/Oda (KyushuU), SDLEF7/Barth (UDEL), Crl:SD (UDEL), BUF/MNa (KyushuU), LEC/Tj (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU)
3	119860924	119860925	G	C	snv	SDLEF7/Barth (UDEL), DOB/Oda (KyushuU), Crl:SD (UDEL), BUF/MNa (KyushuU), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), F344/Stm (KyushuU), F344/Jcl (KyushuU), LEC/Tj (KyushuU)
3	119860991	119860992	C	G	snv	FHL/EurMcwi (MCW), SDLEF7/Barth (UDEL), Crl:SD (UDEL), BUF/MNa (KyushuU), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), F344/Stm (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), DOB/Oda (KyushuU)
3	119861018	119861019	A	C	snv	RCS/Kyo (KyushuU), F344/NSlc (KyushuU), SDLEF7/Barth (UDEL), F344/Stm (KyushuU)
3	119861023	119861024	G	C	snv	F344/Jcl (KyushuU), F344/Stm (KyushuU), RCS/Kyo (KyushuU)
3	119861041	119861042	G	C	snv	F344/Jcl (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), HTX/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU), Crl:SD (UDEL), FHL/EurMcwi (MCW), SDLEF7/Barth (UDEL)
3	119861101	119861102	G	A	snv	GH/OmrMcwi (MCW), FHL/EurMcwi (MCW), COP/CrCrl (MCW & UW), F344/Jcl (KyushuU), F344/Stm (KyushuU), SS/JrHsdMcwi (MCW), F344/NSlc (KyushuU), F344/DuCrlCrlj (KyushuU), Crl:SD (UDEL), SDLEF7/Barth (UDEL), HTX/Kyo (KyushuU)
3	119861143	119861144	G	A	snv	GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), SDLEF7/Barth (UDEL), FHL/EurMcwi (MCW), COP/CrCrl (MCW & UW), DOB/Oda (KyushuU), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), F344/Stm (KyushuU), Crl:SD (UDEL), F344/Jcl (KyushuU), LEC/Tj (KyushuU)
3	119861177	119861178	G	A	snv	DOB/Oda (KyushuU), RCS/Kyo (KyushuU), F344/NSlc (KyushuU), HTX/Kyo (KyushuU), LE/Stm (KyushuU), SDLEF7/Barth (UDEL), GH/OmrMcwi (MCW), FHL/EurMcwi (MCW), LEC/Tj (KyushuU)
3	119861197	119861198	G	T	snv	SDLEF7/Barth (UDEL), LE/Stm (KyushuU), F344/NSlc (KyushuU)
3	119861201	119861202	C	A	snv	SDLEF7/Barth (UDEL), F344/NSlc (KyushuU), LE/Stm (KyushuU)
3	119861370	119861371	G	T	snv	SDLEF7/Barth (UDEL), Crl:SD (UDEL), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/Stm (KyushuU), LEC/Tj (KyushuU), DOB/Oda (KyushuU)
3	119861379	119861380	C	G	snv	F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/Stm (KyushuU), LEC/Tj (KyushuU), DOB/Oda (KyushuU)
3	119861401	119861402	G	A	snv	DOB/Oda (KyushuU), F344/Stm (KyushuU), HTX/Kyo (KyushuU), LE/Stm (KyushuU), Crl:SD (UDEL), SDLEF7/Barth (UDEL)
3	119861403	119861404	G	A	snv	F344/Jcl (KyushuU), DOB/Oda (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), HTX/Kyo (KyushuU), LE/Stm (KyushuU), F344/DuCrlCrlj (KyushuU), SDLEF7/Barth (UDEL), Crl:SD (UDEL)
3	119861418	119861419	G	A	snv	SDLEF7/Barth (UDEL), Crl:SD (UDEL), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/Stm (KyushuU), DOB/Oda (KyushuU)
3	119863012	119863013	G	A	snv	SDLEF7/Barth (UDEL), Crl:SD (UDEL), F344/DuCrlCrlj (KyushuU), HTX/Kyo (KyushuU), DOB/Oda (KyushuU), F344/Stm (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), RCS/Kyo (KyushuU)
3	119863020	119863021	G	A	snv	F344/Jcl (KyushuU), DOB/Oda (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), RCS/Kyo (KyushuU), HTX/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU), BUF/MNa (KyushuU), Crl:SD (UDEL), SDLEF7/Barth (UDEL)
3	119863092	119863093	G	A	snv	F344/Jcl (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), RCS/Kyo (KyushuU), F344/NSlc (KyushuU), SDLEF7/Barth (UDEL), LE/Stm (KyushuU), F344/DuCrlCrlj (KyushuU), BUF/MNa (KyushuU), Crl:SD (UDEL), HTX/Kyo (KyushuU)
3	119863337	119863338	C	A	snv	Crl:SD (UDEL), SDLEF7/Barth (UDEL), BUF/MNa (KyushuU), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), F344/Stm (KyushuU)
3	119863347	119863348	G	A	snv	Crl:SD (UDEL), SDLEF7/Barth (UDEL), BUF/MNa (KyushuU), F344/Stm (KyushuU), RCS/Kyo (KyushuU), HTX/Kyo (KyushuU)
3	119863397	119863398	T	A	snv	SDLEF7/Barth (UDEL), BUF/MNa (KyushuU), RCS/Kyo (KyushuU), F344/NSlc (KyushuU), HTX/Kyo (KyushuU), F344/Stm (KyushuU)
3	119863406	119863407	G	A	snv	SDLEF7/Barth (UDEL), BUF/MNa (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), F344/Stm (KyushuU)
3	119863415	119863416	G	T	snv	SDLEF7/Barth (UDEL), BUF/MNa (KyushuU), HTX/Kyo (KyushuU), F344/Stm (KyushuU)
3	119863783	119863784	T	A	snv	SDLEF7/Barth (UDEL), BUF/MNa (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), DOB/Oda (KyushuU)
3	119863791	119863792	G	C	snv	SDLEF7/Barth (UDEL), BUF/MNa (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), DOB/Oda (KyushuU)
3	119863808	119863809	T	G	snv	LE/Stm (KyushuU), BUF/MNa (KyushuU), SDLEF7/Barth (UDEL), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), DOB/Oda (KyushuU)
3	119863818	119863819	C	G	snv	LE/Stm (KyushuU), BUF/MNa (KyushuU), SDLEF7/Barth (UDEL), HTX/Kyo (KyushuU), DOB/Oda (KyushuU), F344/Jcl (KyushuU), RCS/Kyo (KyushuU)
3	119863861	119863862	T	C	snv	BUF/MNa (KyushuU), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), F344/Jcl (KyushuU), LEC/Tj (KyushuU), RCS/Kyo (KyushuU), DOB/Oda (KyushuU)

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
3	108159919	108159920	C	T	snv	SR/JrHsd (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), LCR/2Mco (UMich), SS/JrHsdMcwi (MCW), HCR/1Mco (UMich), COP/CrCrl (MCW & UW), WKY/N (KNAW), F344/NRrrc (KNAW), LCR/1Mco (UMich)
3	108159962	108159963	C	A	snv	WN/N (KNAW), COP/CrCrl (MCW & UW), HCR/1Mco (UMich), LCR/1Mco (UMich), WKY/N (KNAW), MR/N (KNAW), M520/N (KNAW), LE/Stm (KNAW), F344/NRrrc (KNAW), ACI/N (KNAW), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), LCR/2Mco (UMich), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), FHL/EurMcwi (MCW)
3	108159990	108159991	G	T	snv	ACI/EurMcwi (MCW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/N (KNAW), LE/Stm (KNAW), M520/N (KNAW), MR/N (KNAW), WKY/N (KNAW), WN/N (KNAW)
3	108160875	108160876	C	G	snv	FHL/EurMcwi (MCW), F344/NRrrc (KNAW), ACI/N (KNAW), SS/JrHsdMcwi (MCW), WKY/N (KNAW), SR/JrHsd (MCW)
3	108160925	108160926	G	C	snv	FHL/EurMcwi (MCW), SS/JrHsdMcwi (MCW)
3	108160985	108160986	G	A	snv	GH/OmrMcwi (MCW), COP/CrCrl (MCW & UW), LCR/2Mco (UMich), ACI/EurMcwi (MCW), FHL/EurMcwi (MCW), SR/JrHsd (MCW), HCR/2Mco (UMich), F344/NRrrc (KNAW), SS/JrHsdMcwi (MCW)
3	108161027	108161028	G	A	snv	LCR/2Mco (UMich), HCR/2Mco (UMich), GH/OmrMcwi (MCW), COP/CrCrl (MCW & UW), WN/N (KNAW), WKY/N (KNAW), MR/N (KNAW), M520/N (KNAW), LE/Stm (KNAW), F344/NRrrc (KNAW), ACI/N (KNAW), SS/JrHsdMcwi (MCW), FHL/EurMcwi (MCW), ACI/EurMcwi (MCW), LCR/1Mco (UMich)
3	108161061	108161062	G	A	snv	SS/JrHsdMcwi (MCW), LCR/2Mco (UMich), LCR/1Mco (UMich), GH/OmrMcwi (MCW), FHL/EurMcwi (MCW)
3	108162976	108162977	G	A	snv	LE/Stm (KNAW), FHL/EurMcwi (MCW), SS/JrHsdMcwi (MCW), ACI/N (KNAW)
3	108163745	108163746	T	C	snv	FHL/EurMcwi (MCW), SS/JrHsdMcwi (MCW)

Assembly: mRatBN7.2

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
3	108331702	108331703	T	C	snv	LEXF1C/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), WAG/RijCrl (2020), WN/N (2020), BXH2/CubMcwi (2020), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF1A/Stm (2019)
3	108331714	108331715	A	G	snv	LH/MavRrrcAek (2020), M520/NRrrcMcwi (2019), LEXF3/Stm (2020), LEXF2B/Stm (2019), LEXF1C/Stm (2019), LEXF11/Stm (2020), LEW/Crl (2019), HXB2/IpcvMcwi (2019), GK/FarMcwi (2019), FXLE18/Stm (2020), FXLE16/Stm (2020), FHH/EurMcwi (2019), BXH2/CubMcwi (2020), WN/N (2020), WAG/RijCrl (2020), SR/JrHsd (2020), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), MWF/Hsd (2019), M520/N (2020), LE/Stm (2019)
3	108331789	108331790	C	T	snv	LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), LEXF3/Stm (2020), LEXF2B/Stm (2019), LEXF1C/Stm (2019), LEXF1A/Stm (2019), LEXF11/Stm (2020), LEW/Crl (2019), HXB2/IpcvMcwi (2019), GK/FarMcwi (2019), FXLE18/Stm (2020), FXLE16/Stm (2020), FHH/EurMcwi (2019), WN/N (2020), F344/N (2020), F344/NCrl (2019), F344/DuCrl (2019), BXH2/CubMcwi (2020), ACI/N (2020), ACI/EurMcwi (2019), F344/Stm (2019)
3	108331832	108331833	C	A	snv	ACI/EurMcwi (2019), WN/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), ACI/N (2020)
3	108331860	108331861	G	T	snv	SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019)
3	108332075	108332076	C	T	snv	ACI/EurMcwi (2019), WN/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), ACI/N (2020)
3	108332088	108332089	A	T	snv	WKY/N (2020), WN/N (2020), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019)
3	108332091	108332092	G	T	snv	ACI/EurMcwi (2019), WN/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), ACI/N (2020)
3	108332124	108332125	A	C	snv	ACI/EurMcwi (2019), WN/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), ACI/N (2020)
3	108332678	108332679	G	C	snv	BXH2/CubMcwi (2020), ACI/N (2020)
3	108332745	108332746	C	G	snv	ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020)
3	108332772	108332773	A	C	snv	SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019)
3	108332795	108332796	G	C	snv	ACI/EurMcwi (2019), WN/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), ACI/N (2020)
3	108332855	108332856	G	A	snv	ACI/EurMcwi (2019), WN/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), ACI/N (2020)
3	108332897	108332898	G	A	snv	WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019)
3	108332931	108332932	G	A	snv	ACI/EurMcwi (2019), WN/N (2020), F344/DuCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), ACI/N (2020)
3	108332951	108332952	G	T	snv	LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WN/N (2020), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), GK/FarMcwi (2019)
3	108332955	108332956	C	A	snv	ACI/EurMcwi (2019), WN/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), ACI/N (2020)
3	108334766	108334767	G	A	snv	GK/FarMcwi (2019), WAG/RijCrl (2020)
3	108334774	108334775	G	A	snv	GK/FarMcwi (2019), WAG/RijCrl (2020)
3	108334846	108334847	G	A	snv	BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/N (2020), SS/JrHsdMcwi (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), LEXF11/Stm (2020)
3	108335091	108335092	C	A	snv	ACI/EurMcwi (2019), WN/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), ACI/N (2020)
3	108335101	108335102	G	A	snv	F344/DuCrl (2019), WKY/N (2020), WKY/NCrl (2019), WAG/RijCrl (2020), SS/JrHsdMcwi (2019), SR/JrHsd (2020), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), MWF/Hsd (2019), M520/N (2020), M520/NRrrcMcwi (2019), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), LEXF2B/Stm (2019), LEXF1C/Stm (2019),

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