Bcat1 (branched chain amino acid transaminase 1)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes Community Projects (beta) QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Bcat1 (branched chain amino acid transaminase 1) Rattus norvegicus

Analyze

Symbol:

Bcat1

Name:

branched chain amino acid transaminase 1

RGD ID:

2195

Description:

Enables branched-chain-amino-acid transaminase activity and identical protein binding activity. Predicted to be involved in amino acid biosynthetic process; branched-chain amino acid biosynthetic process; and lipid metabolic process. Predicted to act upstream of or within branched-chain amino acid catabolic process. Predicted to be located in cytosol. Orthologous to human BCAT1 (branched chain amino acid transaminase 1); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

BCAT(c); Bcatc; branched chain amino acid transaminase 1, cytosolic; branched chain aminotransferase 1, cytosolic; branched-chain-amino-acid aminotransferase, cytosolic; MGC105472

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BCAT1 (branched chain amino acid transaminase 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Bcat1 (branched chain aminotransferase 1, cytosolic)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Bcat1 (branched chain amino acid transaminase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BCAT1 (branched chain amino acid transaminase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BCAT1 (branched chain amino acid transaminase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Bcat1 (branched chain amino acid transaminase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BCAT1 (branched chain amino acid transaminase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BCAT1 (branched chain amino acid transaminase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Bcat1 (branched chain amino acid transaminase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Bcat1 (branched chain aminotransferase 1, cytosolic)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	BCAT1 (branched chain amino acid transaminase 1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	bcat1 (branched chain amino-acid transaminase 1, cytosolic)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	BAT1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	BAT2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG1673	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y44A6D.5	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	bcat-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Allele / Splice:

Bcat1^em2Mcwi

Genetic Models:

SS-Bcat1^em2Mcwi

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	177,964,834 - 178,046,573 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	177,964,834 - 178,046,597 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	184,266,200 - 184,349,150 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	180,050,703 - 180,133,655 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	178,671,128 - 178,754,073 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	179,259,305 - 179,340,021 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	179,259,308 - 179,339,795 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	243,463,299 - 243,491,574 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	4	243,444,839 - 243,460,481 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	182,641,517 - 182,692,917 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	182,886,640 - 182,938,041 (-)	NCBI
Celera	4	166,483,269 - 166,533,125 (-)	NCBI		Celera
Cytogenetic Map	4	q44	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brain Injuries (IEP)

cholestasis (ISO)

COVID-19 (ISO)

genetic disease (ISO)

Weight Gain (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3-dimethoxynaphthalene-1,4-dione (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4-hydroxyphenyl retinamide (ISO)

5-azacytidine (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

allyl alcohol (EXP)

Allylamine (EXP)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

beta-naphthoflavone (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

bucladesine (ISO)

Butylbenzyl phthalate (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcidiol (EXP)

carbamazepine (ISO)

carbofuran (EXP)

carbon nanotube (ISO)

chlordecone (ISO)

chloroacetaldehyde (ISO)

cisplatin (EXP,ISO)

clodronic acid (ISO)

cobalt dichloride (ISO)

cocaine (EXP)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

cyclosporin A (EXP,ISO)

DDT (EXP)

deguelin (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP)

dieldrin (EXP)

diethyl phthalate (EXP)

diethylstilbestrol (ISO)

diisobutyl phthalate (EXP)

diisononyl phthalate (EXP)

dioxygen (EXP,ISO)

diquat (ISO)

doxorubicin (EXP,ISO)

endosulfan (EXP)

enzyme inhibitor (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenofibrate (ISO)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

furan (EXP)

genistein (ISO)

gentamycin (EXP)

heptachlor (EXP)

hydrogen peroxide (ISO)

ifosfamide (ISO)

isoprenaline (EXP)

lead diacetate (EXP,ISO)

maneb (ISO)

medroxyprogesterone acetate (ISO)

metacetamol (ISO)

metaproterenol (EXP)

methapyrilene (EXP,ISO)

methyl methanesulfonate (ISO)

mirex (EXP)

mitoxantrone (EXP)

N-methyl-4-phenylpyridinium (ISO)

neomycin (ISO)

nickel atom (ISO)

orciprenaline (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP,ISO)

pentane-2,3-dione (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenylbutazone (EXP)

potassium chromate (ISO)

progesterone (ISO)

quercetin (ISO)

scopolamine (EXP)

silicon dioxide (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

T-2 toxin (ISO)

tamibarotene (ISO)

tamoxifen (ISO)

temozolomide (ISO)

testosterone (EXP)

tetrachloromethane (ISO)

thapsigargin (ISO)

titanium dioxide (EXP,ISO)

triamterene (EXP)

tributylstannane (EXP)

Tributyltin oxide (ISO)

trichloroethene (EXP)

trimellitic anhydride (ISO)

trovafloxacin (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

amino acid biosynthetic process (IEA)

biological_process (ND)

branched-chain amino acid biosynthetic process (IEA)

branched-chain amino acid catabolic process (ISO)

leucine biosynthetic process (IBA)

lipid metabolic process (IEA)

valine biosynthetic process (IBA)

Cellular Component

cytosol (ISO)

mitochondrion (IBA)

Molecular Function

branched-chain-amino-acid transaminase activity (IBA,IDA,IEA,ISO,TAS)

identical protein binding (IDA)

L-isoleucine transaminase activity (IEA)

L-leucine transaminase activity (IEA)

L-leucine:2-oxoglutarate aminotransferase activity (IEA)

L-valine transaminase activity (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway (ISO)

3-hydroxyisobutyric aciduria pathway (ISO)

3-methylcrotonyl CoA carboxylase 1 deficiency pathway (ISO)

3-methylglutaconic aciduria type 1 pathway (ISO)

3-methylglutaconic aciduria type 3 pathway (ISO)

isobutyryl-CoA dehydrogenase deficiency pathway (ISO)

isovaleric acidemia pathway (ISO)

maple syrup urine disease pathway (ISO)

methylmalonate semialdehyde dehydrogenase deficiency pathway (ISO)

methylmalonic acidemia pathway (ISO)

pantothenic acid metabolic pathway (IEA)

propionic acidemia pathway (ISO)

valine, leucine and isoleucine biosynthetic pathway (IEA)

valine, leucine and isoleucine degradation pathway (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Cellular distribution of branched-chain amino acid aminotransferase isoenzymes among rat brain glial cells in culture.	Bixel MG, etal., J Histochem Cytochem. 1997 May;45(5):685-94.
2.	Changes in butyrylcholinesterase activity and serum lipids after oxprenolol and glibenclamide treatments in non-diabetic rats.	Bradamante V, etal., Arzneimittelforschung. 2006;56(2):64-9.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Branched chain aminotransferase isoenzymes. Purification and characterization of the rat brain isoenzyme.	Hall TR, etal., J Biol Chem. 1993 Feb 15;268(5):3092-8.
5.	Cloning and expression of the mammalian cytosolic branched chain aminotransferase isoenzyme.	Hutson SM, etal., J Biol Chem 1995 Dec 22;270(51):30344-52.
6.	KEGG: Kyoto Encyclopedia of Genes and Genomes	KEGG
7.	Upregulation of cytosolic branched chain aminotransferase in substantia nigra following developmental striatal target injury.	Kholodilov NG, etal., Brain Res Mol Brain Res 2000 Feb 22;75(2):281-6.
8.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
9.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
10.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
11.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
12.	GOA pipeline	RGD automated data pipeline
13.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
15.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:12477932	PMID:14755340	PMID:15489334	PMID:16141215	PMID:17348860	PMID:18614015	PMID:22871113

Genomics

Comparative Map Data

Bcat1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	177,964,834 - 178,046,573 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	177,964,834 - 178,046,597 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	184,266,200 - 184,349,150 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	180,050,703 - 180,133,655 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	178,671,128 - 178,754,073 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	179,259,305 - 179,340,021 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	179,259,308 - 179,339,795 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	243,463,299 - 243,491,574 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	4	243,444,839 - 243,460,481 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	182,641,517 - 182,692,917 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	182,886,640 - 182,938,041 (-)	NCBI
Celera	4	166,483,269 - 166,533,125 (-)	NCBI		Celera
Cytogenetic Map	4	q44	NCBI

BCAT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	24,810,024 - 24,949,340 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	24,810,024 - 24,949,101 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	24,962,958 - 25,102,035 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	24,855,545 - 24,993,499 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	24,855,561 - 24,993,499	NCBI
Celera	12	30,109,823 - 30,249,287 (-)	NCBI		Celera
Cytogenetic Map	12	p12.1	NCBI
HuRef	12	24,732,841 - 24,872,358 (-)	NCBI		HuRef
CHM1_1	12	24,928,106 - 25,067,454 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	24,679,997 - 24,819,416 (-)	NCBI		T2T-CHM13v2.0

Bcat1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	144,939,561 - 145,021,883 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	144,939,561 - 145,021,910 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	144,993,835 - 145,076,157 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	144,993,835 - 145,076,184 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	144,942,355 - 145,024,677 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	144,956,312 - 145,033,242 (-)	NCBI		MGSCv36	mm8
Celera	6	148,047,506 - 148,145,066 (-)	NCBI		Celera
Cytogenetic Map	6	G3	NCBI
cM Map	6	77.27	NCBI

Bcat1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	19,981,328 - 20,087,638 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	19,975,395 - 20,087,656 (-)	NCBI	ChiLan1.0	ChiLan1.0

BCAT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	12	71,863,725 - 72,000,314 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	61,364,154 - 61,500,827 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	63,978,116 - 64,114,127 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	63,978,116 - 64,107,463 (+)	Ensembl	panpan1.1		panPan2

BCAT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	22,536,297 - 22,643,350 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	22,535,254 - 22,636,959 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	23,725,637 - 23,832,733 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	22,769,835 - 22,843,576 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	22,735,227 - 22,841,025 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	22,584,192 - 22,657,415 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	22,569,213 - 22,676,273 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	23,897,853 - 24,005,177 (-)	NCBI		UU_Cfam_GSD_1.0

Bcat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	84,462,896 - 84,532,986 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936548	2,385,756 - 2,454,423 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BCAT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	48,814,313 - 48,925,973 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	48,814,212 - 48,925,632 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	52,534,770 - 52,624,453 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BCAT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	24,578,760 - 24,709,541 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	24,579,487 - 24,709,132 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666069	10,417,680 - 10,554,451 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bcat1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	14,106,884 - 14,164,064 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	14,074,701 - 14,166,075 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Bcat1
578 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	109
Count of miRNA genes:	90
Interacting mature miRNAs:	96
Transcripts:	ENSRNOT00000021193
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
2303623	Vencon2	Ventilatory control QTL 2	3.8		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	4	135204660	180204660	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	135699135	180699135	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	137755016	181392681	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	138503169	179293946	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	144639524	182687754	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	144639524	182687754	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	145568712	182687754	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	155561574	182687754	Rat
1300109	Rf13	Renal function QTL 13	3.91		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	4	157710145	182687754	Rat

Markers in Region

RH137483

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	178,010,417 - 178,010,618 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	179,304,131 - 179,304,331	NCBI	Rnor6.0
Rnor_5.0	4	243,488,610 - 243,488,810	UniSTS	Rnor5.0
RGSC_v3.4	4	182,689,953 - 182,690,153	UniSTS	RGSC3.4
Celera	4	166,530,161 - 166,530,361	UniSTS
Cytogenetic Map	4	q44	UniSTS

AU048984

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	177,986,839 - 177,987,023 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	179,280,467 - 179,280,650	NCBI	Rnor6.0
Rnor_5.0	4	243,465,541 - 243,465,724	UniSTS	Rnor5.0
RGSC_v3.4	4	182,665,427 - 182,665,610	UniSTS	RGSC3.4
Celera	4	166,506,352 - 166,506,535	UniSTS
Cytogenetic Map	4	q44	UniSTS

RH128559

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	177,964,886 - 177,965,077 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	179,259,358 - 179,259,548	NCBI	Rnor6.0
Rnor_5.0	4	243,444,892 - 243,445,082	UniSTS	Rnor5.0
RGSC_v3.4	4	182,641,570 - 182,641,760	UniSTS	RGSC3.4
Celera	4	166,483,322 - 166,483,512	UniSTS
Cytogenetic Map	4	q44	UniSTS

RH138612

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	178,011,088 - 178,011,232 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	179,304,801 - 179,304,944	NCBI	Rnor6.0
Rnor_5.0	4	243,489,280 - 243,489,423	UniSTS	Rnor5.0
RGSC_v3.4	4	182,690,623 - 182,690,766	UniSTS	RGSC3.4
Celera	4	166,530,831 - 166,530,974	UniSTS
RH 3.4 Map	4	1077.3	UniSTS
Cytogenetic Map	4	q44	UniSTS

Genetic Models

This gene Bcat1 is modified in the following models/strains:

SS-Bcat1^em2Mcwi

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High									7
Medium	2	22	18	6	9	6			67	14	30	3
Low	1	21	28	24	10	24	8	11		21	10	8	8
Below cutoff			11	11		11					1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001394001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_017253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF165887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ278701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HC897056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U35774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000021193 ⟹ ENSRNOP00000021193

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	177,964,834 - 178,012,316 (-)	Ensembl
Rnor_6.0 Ensembl	4	179,259,310 - 179,307,095 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080410 ⟹ ENSRNOP00000074245

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	177,964,834 - 178,046,597 (-)	Ensembl
Rnor_6.0 Ensembl	4	179,259,308 - 179,339,795 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097702 ⟹ ENSRNOP00000093677

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	177,964,842 - 178,012,123 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117044 ⟹ ENSRNOP00000090195

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	177,964,834 - 178,046,411 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119115 ⟹ ENSRNOP00000085607

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	177,964,839 - 178,013,847 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000120070 ⟹ ENSRNOP00000082839

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	177,964,836 - 178,013,245 (-)	Ensembl

RefSeq Acc Id:

NM_001394001 ⟹ NP_001380930

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	177,964,834 - 178,046,463 (-)	NCBI

RefSeq Acc Id:

NM_017253 ⟹ NP_058949

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	177,964,834 - 178,013,383 (-)	NCBI
Rnor_6.0	4	179,259,305 - 179,307,095 (-)	NCBI
Rnor_5.0	4	243,444,839 - 243,460,481 (-)	NCBI
Rnor_5.0	4	243,463,299 - 243,491,574 (-)	NCBI
RGSC_v3.4	4	182,641,517 - 182,692,917 (-)	RGD
Celera	4	166,483,269 - 166,533,125 (-)	RGD

Sequence:

show sequence

CCCATCATACCTCTATCGCCTGCCCCGCCGAACTGCAACCCCGGGCTCTCGGCAGCGCCGCTGT
GCCACGCATTTCCACGCGCCCGCAGCTTTGTCATGGCCTACTTGTCCCGGGCAACTGCAACCCT
GGCCCGCCAGGACTGCAGTAATGGATGTTCGGCATCGTATGCTGAAGAAGAAGAATTAGAAGCT
TCGACCGAGTCGTATGATGAAGAAGGAGGATCAGAAGCTTCGACCCAGACGTTTAGGGCCAAAG
ATCTCATTATCACAAAAGCCGATGTCTTAAAAAAGAAGCCCGACCCCAGCTCGCTGGTCTTTGG
AGCTTCGTTCACTGACCACATGCTGATGGTGGAGTGGACCTCCAAGTATGGATGGGATAAGCCT
CACATCAAGCCTTTTGAAAACTTGTCCATACATCCCGCTGCCTCTGTTTTGCACTATGCTGTGG
AATTGTTTGAAGGCTTGAAGGCTTTTCGGGGAGTTGATAACAAGATCCGATTGTTCCGGCCGGA
CCTCAACATGAAAAGAATGTGCCGATCTGCCGTGAGGACCACTCTGCCGGAGTTTGACAAGGAG
GAGCTTCTGCAATGCGTTCTTCAGCTCATACAGCTCGACCGAGAGTGGGTCCCCTACTCAACCT
CTGCCAGTCTGTACATCCGCCCCACATTCATCGGGATTGAGCCATCGCTTGGAGTCAAGAAGCC
TTCTAAAGCTCTGCTCTTTGTGATTTTGAGCCCCGTGGGATCTTATTTTTCTAATGGGACCTTT
TCTCCGGTGTCCCTGTGGGCCAACCCAAAGTTCGTCAGATCCTGGAAAGGTGGGACTGGAGACT
TCAAGATGGGCTGCAACTATGGATCTTCCCTTCTGGCGCAGTGTGAGGCGGCAGAGAACGGCTG
TCACCAGGTCCTGTGGCTGTACGGCAAGGAAAACCGGATAACTGAAGTGGGCACGATGAATCTC
TTCCTCTACTGGATAAACAAAGATGGAGAAGAAGAACTGGCGACGCCTCCGCTAGATGGCGTCA
TTCTCCCAGGAGTCACTCGGCAGAGCATCCTGGAGCTGGGAGAAGAGTGGGGCGAGTTTAAGGT
GTGCGAGAGACACATCACCATGGATGACCTGTCCACCGCCCTGGAGGAGAACAGAGTGAAGGAG
ATGTTCGGCTCGGGGACAGCCTGCGTTGTCTGCCCAGTTGCCAGTATTCTGTACAAGGGCCAGA
TGCTGCACATTCCAACCATGGAGAATGGCCACAAGCTTTCAAGTCGCATCATGGCAAAGTTGAC
TGATATCCAGTATGGACGGATCAAGAGCGAATGGACACTGGAGTTGCCCTAATGGGAGAGCTCA
GGGTATCGGTGACGGGGTGCCACAGAAGACCGACTCCTGTCCTCGAGCTGGGACAACCTGTGAC
TATTTTAACTCCTTGTAGTTCCATTGTTCATTGTTACCAAACGAGTTTGTGTCCCCCCCCCCCC
CCGTGAGCCAAGAAAATTGCCAGTGTTAAGTGTCACCTGTGAACATGATAGTAGCTGCTTTACT
GTACCTTTCCTTGGAAAGCTATCAATGAATAATTGCCTCCCCTCACTCCATACCAGATCCTTAG
TAGGAGAATGGGTTCCCCCACCAATGAGATGACTGTGTGCTGGAAGGGCTACTGAGGAAATGCC
ATAGGCGGCCTCCCTGTGACTCATGGGCACCCTCAGAGCGGGAGCCCTTTGTTACTTTTGCTGG
CTGGTAAGGTTCTGTTGTTTACGTTTTTGTTTGTTTGTTTCTAATTGGGGAAGATTTGGGCTCC
CTGTGAAGCCCTGCTGGCCTGGTATTCCGTGATGTCTGCCCAGGCTGGTCTCAGACTCGGAGCG
GGTCTTCCTGTCTCACACAGCCTTCTGGATGCTGGGGCGATGGACAGGTGTGATACCTTGATTT
GTTTCTGTCTTTTAAACAAAAGTTTGGTCGGCTGGATTTCGTTTCTCCGCGCTTCTGTAAGTCC
CTGAGTCCGCGCTAAGGTGACCGTGCCCCTTCTTGGTATCATGGCCTGCACTAATGTCACCGAA
GGTGTCTGTGAGGCTCACTGCCCTTTTTCTGTAACTATACCTGGCTGCTCACTGCGCTGCTATG
AGACTAGGGGTCCTGTGCCTTCTAGATCTTTGTATCCTCAAAGCCCAGCACATAGTAAGTATTC
AGTACTTGTTTACCATGAGAATGAACATAGAAGTGTACTTTCTGTCTCTCCATGCTGAAACCCT
TTCGGAAACCACGCCTGATTCGGGCAGCATGTAGCAGTATTTATCTTAGGCTGTCTTTCTTGTC
CCTGGACTCCTCCAGACAGCATGGAGGAATTCTGTTTTAAGATTATCTTGGAGTTTAAGTGATT
GCCCTGGAAAAATGAAATGTACCAACCATGTGGAAATGACAGCTACTGTACATTATGTATGAAA
TGCCAAATAAAGGGACAAGTTGGGAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAGG

hide sequence

RefSeq Acc Id:

XM_008763370 ⟹ XP_008761592

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	177,964,834 - 178,013,087 (-)	NCBI
Rnor_6.0	4	179,259,305 - 179,306,810 (-)	NCBI

Sequence:

show sequence

TTTGGGGGGGGTCACCGCTGGAGACTCGGAGATGCGGAAAACTCGGAGGTTGTCACAGAGAATG
CAGGGTTTGGGAGACGCTAGGTCGCAGCGGAGGTCGCCACTAGGGAACTCAGGGATGGAGGACT
GCAGTAATGGATGTTCGGCATCGTATGCTGAAGAAGAAGAATTAGAAGCTTCGACCGAGTCGTA
TGATGAAGAAGGAGGATCAGAAGCTTCGACCCAGACGTTTAGGGCCAAAGATCTCATTATCACA
AAAGCCGATGTCTTAAAAAAGAAGCCCGACCCCAGCTCGCTGGTCTTTGGAGCTTCGTTCACTG
ACCACATGCTGATGGTGGAGTGGACCTCCAAGTATGGATGGGATAAGCCTCACATCAAGCCTTT
TGAAAACTTGTCCATACATCCCGCTGCCTCTGTTTTGCACTATGCTGTGGAATTGTTTGAAGGC
TTGAAGGCTTTTCGGGGAGTTGATAACAAGATCCGATTGTTCCGGCCGGACCTCAACATGAAAA
GAATGTGCCGATCTGCCGTGAGGACCACTCTGCCGGAGTTTGACAAGGAGGAGCTTCTGCAATG
CGTTCTTCAGCTCATACAGCTCGACCGAGAGTGGGTCCCCTACTCAACCTCTGCCAGTCTGTAC
ATCCGCCCCACATTCATCGGGATTGAGCCATCGCTTGGAGTCAAGAAGCCTTCTAAAGCTCTGC
TCTTTGTGATTTTGAGCCCCGTGGGATCTTATTTTTCTAATGGGACCTTTTCTCCGGTGTCCCT
GTGGGCCAACCCAAAGTTCGTCAGATCCTGGAAAGGTGGGACTGGAGACTTCAAGATGGGCTGC
AACTATGGATCTTCCCTTCTGGCGCAGTGTGAGGCGGCAGAGAACGGCTGTCACCAGGTCCTGT
GGCTGTACGGCAAGGAAAACCGGATAACTGAAGTGGGCACGATGAATCTCTTCCTCTACTGGAT
AAACAAAGATGGAGAAGAAGAACTGGCGACGCCTCCGCTAGATGGCGTCATTCTCCCAGGAGTC
ACTCGGCAGAGCATCCTGGAGCTGGGAGAAGAGTGGGGCGAGTTTAAGGTGTGCGAGAGACACA
TCACCATGGATGACCTGTCCACCGCCCTGGAGGAGAACAGAGTGAAGGAGATGTTCGGCTCGGG
GACAGCCTGCGTTGTCTGCCCAGTTGCCAGTATTCTGTACAAGGGCCAGATGCTGCACATTCCA
ACCATGGAGAATGGCCACAAGCTTTCAAGTCGCATCATGGCAAAGTTGACTGATATCCAGTATG
GACGGATCAAGAGCGAATGGACACTGGAGTTGCCCTAATGGGAGAGCTCAGGGTATCGGTGACG
GGGTGCCACAGAAGACCGACTCCTGTCCTCGAGCTGGGACAACCTGTGACTATTTTAACTCCTT
GTAGTTCCATTGTTCATTGTTACCAAACGAGTTTGTGTCCCCCCCCCCCCCCGTGAGCCAAGAA
AATTGCCAGTGTTAAGTGTCACCTGTGAACATGATAGTAGCTGCTTTACTGTACCTTTCCTTGG
AAAGCTATCAATGAATAATTGCCTCCCCTCACTCCATACCAGATCCTTAGTAGGAGAATGGGTT
CCCCCACCAATGAGATGACTGTGTGCTGGAAGGGCTACTGAGGAAATGCCATAGGCGGCCTCCC
TGTGACTCATGGGCACCCTCAGAGCGGGAGCCCTTTGTTACTTTTGCTGGCTGGTAAGGTTCTG
TTGTTTACGTTTTTGTTTGTTTGTTTCTAATTGGGGAAGATTTGGGCTCCCTGTGAAGCCCTGC
TGGCCTGGTATTCCGTGATGTCTGCCCAGGCTGGTCTCAGACTCGGAGCGGGTCTTCCTGTCTC
ACACAGCCTTCTGGATGCTGGGGCGATGGACAGGTGTGATACCTTGATTTGTTTCTGTCTTTTA
AACAAAAGTTTGGTCGGCTGGATTTCGTTTCTCCGCGCTTCTGTAAGTCCCTGAGTCCGCGCTA
AGGTGACCGTGCCCCTTCTTGGTATCATGGCCTGCACTAATGTCACCGAAGGTGTCTGTGAGGC
TCACTGCCCTTTTTCTGTAACTATACCTGGCTGCTCACTGCGCTGCTATGAGACTAGGGGTCCT
GTGCCTTCTAGATCTTTGTATCCTCAAAGCCCAGCACATAGTAAGTATTCAGTACTTGTTTACC
ATGAGAATGAACATAGAAGTGTACTTTCTGTCTCTCCATGCTGAAACCCTTTCGGAAACCACGC
CTGATTCGGGCAGCATGTAGCAGTATTTATCTTAGGCTGTCTTTCTTGTCCCTGGACTCCTCCA
GACAGCATGGAGGAATTCTGTTTTAAGATTATCTTGGAGTTTAAGTGATTGCCCTGGAAAAATG
AAATGTACCAACCATGTGGAAATGACAGCTACTGTACATTATGTATGAAATGCCAAATAAAGGG
ACAAGTTGGGAGATAAA

hide sequence

RefSeq Acc Id:

XM_008763372 ⟹ XP_008761594

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	177,964,834 - 178,046,573 (-)	NCBI
Rnor_6.0	4	179,259,305 - 179,339,936 (-)	NCBI

Sequence:

show sequence

GAGACCAGACCCTTGTGCACTTGTCCCCACCCTGGAGTGAGCCAGAGGTCTGGCTGTAGCTCGC
TGCTGCGCCATTCGCTGATGCAATCCGCAGCAGAGCGCGCCCAGCTCTCCATCTTCCGCGCTTG
CCGACCCTGAGGGCCACGTGTCGCCGCACCGCCGCCTCCTCAGAGACTCGATTTTTCACCCAGG
GGCTGGAGCCACGACCCCAGCCAAGAGCAATGAAGGACTGCAGTAATGGATGTTCGGCATCGTA
TGCTGAAGAAGAAGAATTAGAAGCTTCGACCGAGTCGTATGATGAAGAAGGAGGATCAGAAGCT
TCGACCCAGACGTTTAGGGCCAAAGATCTCATTATCACAAAAGCCGATGTCTTAAAAAAGAAGC
CCGACCCCAGCTCGCTGGTCTTTGGAGCTTCGTTCACTGACCACATGCTGATGGTGGAGTGGAC
CTCCAAGTATGGATGGGATAAGCCTCACATCAAGCCTTTTGAAAACTTGTCCATACATCCCGCT
GCCTCTGTTTTGCACTATGCTGTGGAATTGTTTGAAGGCTTGAAGGCTTTTCGGGGAGTTGATA
ACAAGATCCGATTGTTCCGGCCGGACCTCAACATGAAAAGAATGTGCCGATCTGCCGTGAGGAC
CACTCTGCCGGAGTTTGACAAGGAGGAGCTTCTGCAATGCGTTCTTCAGCTCATACAGCTCGAC
CGAGAGTGGGTCCCCTACTCAACCTCTGCCAGTCTGTACATCCGCCCCACATTCATCGGGATTG
AGCCATCGCTTGGAGTCAAGAAGCCTTCTAAAGCTCTGCTCTTTGTGATTTTGAGCCCCGTGGG
ATCTTATTTTTCTAATGGGACCTTTTCTCCGGTGTCCCTGTGGGCCAACCCAAAGTTCGTCAGA
TCCTGGAAAGGTGGGACTGGAGACTTCAAGATGGGCTGCAACTATGGATCTTCCCTTCTGGCGC
AGTGTGAGGCGGCAGAGAACGGCTGTCACCAGGTCCTGTGGCTGTACGGCAAGGAAAACCGGAT
AACTGAAGTGGGCACGATGAATCTCTTCCTCTACTGGATAAACAAAGATGGAGAAGAAGAACTG
GCGACGCCTCCGCTAGATGGCGTCATTCTCCCAGGAGTCACTCGGCAGAGCATCCTGGAGCTGG
GAGAAGAGTGGGGCGAGTTTAAGGTGTGCGAGAGACACATCACCATGGATGACCTGTCCACCGC
CCTGGAGGAGAACAGAGTGAAGGAGATGTTCGGCTCGGGGACAGCCTGCGTTGTCTGCCCAGTT
GCCAGTATTCTGTACAAGGGCCAGATGCTGCACATTCCAACCATGGAGAATGGCCACAAGCTTT
CAAGTCGCATCATGGCAAAGTTGACTGATATCCAGTATGGACGGATCAAGAGCGAATGGACACT
GGAGTTGCCCTAATGGGAGAGCTCAGGGTATCGGTGACGGGGTGCCACAGAAGACCGACTCCTG
TCCTCGAGCTGGGACAACCTGTGACTATTTTAACTCCTTGTAGTTCCATTGTTCATTGTTACCA
AACGAGTTTGTGTCCCCCCCCCCCCCCGTGAGCCAAGAAAATTGCCAGTGTTAAGTGTCACCTG
TGAACATGATAGTAGCTGCTTTACTGTACCTTTCCTTGGAAAGCTATCAATGAATAATTGCCTC
CCCTCACTCCATACCAGATCCTTAGTAGGAGAATGGGTTCCCCCACCAATGAGATGACTGTGTG
CTGGAAGGGCTACTGAGGAAATGCCATAGGCGGCCTCCCTGTGACTCATGGGCACCCTCAGAGC
GGGAGCCCTTTGTTACTTTTGCTGGCTGGTAAGGTTCTGTTGTTTACGTTTTTGTTTGTTTGTT
TCTAATTGGGGAAGATTTGGGCTCCCTGTGAAGCCCTGCTGGCCTGGTATTCCGTGATGTCTGC
CCAGGCTGGTCTCAGACTCGGAGCGGGTCTTCCTGTCTCACACAGCCTTCTGGATGCTGGGGCG
ATGGACAGGTGTGATACCTTGATTTGTTTCTGTCTTTTAAACAAAAGTTTGGTCGGCTGGATTT
CGTTTCTCCGCGCTTCTGTAAGTCCCTGAGTCCGCGCTAAGGTGACCGTGCCCCTTCTTGGTAT
CATGGCCTGCACTAATGTCACCGAAGGTGTCTGTGAGGCTCACTGCCCTTTTTCTGTAACTATA
CCTGGCTGCTCACTGCGCTGCTATGAGACTAGGGGTCCTGTGCCTTCTAGATCTTTGTATCCTC
AAAGCCCAGCACATAGTAAGTATTCAGTACTTGTTTACCATGAGAATGAACATAGAAGTGTACT
TTCTGTCTCTCCATGCTGAAACCCTTTCGGAAACCACGCCTGATTCGGGCAGCATGTAGCAGTA
TTTATCTTAGGCTGTCTTTCTTGTCCCTGGACTCCTCCAGACAGCATGGAGGAATTCTGTTTTA
AGATTATCTTGGAGTTTAAGTGATTGCCCTGGAAAAATGAAATGTACCAACCATGTGGAAATGA
CAGCTACTGTACATTATGTATGAAATGCCAAATAAAGGGACAAGTTGGGAGATAAA

hide sequence

RefSeq Acc Id:

XM_008763373 ⟹ XP_008761595

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	177,964,834 - 178,012,429 (-)	NCBI
Rnor_6.0	4	179,259,305 - 179,306,141 (-)	NCBI

Sequence:

show sequence

AAGCAGCCTGCCTATTGTGCGCCTGTGATTGACAAGACCACGAGGCTGAGCGCGCTCGAGAGAT
TTTTTTTTTCCCCACCTCTCTATAAACGGCTTAAACCCTCGGTCTAGACGACTTACTCGGACAT
TCGGGAGACAATTGCCTTCTTGTTCATTGCTGGAGAACCCTGGCTCCTGGGCTGACCCGGAATT
TAAGGAGCTCCTCCCCAAGCTGCTAGAAGATATATTAAGTCAGACCTGGGAGGGTGGGAAGCCT
AGGACAGTCACTCCGGCTGGAGCTGGCCCTGTGTGTTGGACGGTCCAGGTTTGGCTTTTCTGTC
TTCTGTGATGGACTGCAGTAATGGATGTTCGGCATCGTATGCTGAAGAAGAAGAATTAGAAGCT
TCGACCGAGTCGTATGATGAAGAAGGAGGATCAGAAGCTTCGACCCAGACGTTTAGGGCCAAAG
ATCTCATTATCACAAAAGCCGATGTCTTAAAAAAGAAGCCCGACCCCAGCTCGCTGGTCTTTGG
AGCTTCGTTCACTGACCACATGCTGATGGTGGAGTGGACCTCCAAGTATGGATGGGATAAGCCT
CACATCAAGCCTTTTGAAAACTTGTCCATACATCCCGCTGCCTCTGTTTTGCACTATGCTGTGG
AATTGTTTGAAGGCTTGAAGGCTTTTCGGGGAGTTGATAACAAGATCCGATTGTTCCGGCCGGA
CCTCAACATGAAAAGAATGTGCCGATCTGCCGTGAGGACCACTCTGCCGGAGTTTGACAAGGAG
GAGCTTCTGCAATGCGTTCTTCAGCTCATACAGCTCGACCGAGAGTGGGTCCCCTACTCAACCT
CTGCCAGTCTGTACATCCGCCCCACATTCATCGGGATTGAGCCATCGCTTGGAGTCAAGAAGCC
TTCTAAAGCTCTGCTCTTTGTGATTTTGAGCCCCGTGGGATCTTATTTTTCTAATGGGACCTTT
TCTCCGGTGTCCCTGTGGGCCAACCCAAAGTTCGTCAGATCCTGGAAAGGTGGGACTGGAGACT
TCAAGATGGGCTGCAACTATGGATCTTCCCTTCTGGCGCAGTGTGAGGCGGCAGAGAACGGCTG
TCACCAGGTCCTGTGGCTGTACGGCAAGGAAAACCGGATAACTGAAGTGGGCACGATGAATCTC
TTCCTCTACTGGATAAACAAAGATGGAGAAGAAGAACTGGCGACGCCTCCGCTAGATGGCGTCA
TTCTCCCAGGAGTCACTCGGCAGAGCATCCTGGAGCTGGGAGAAGAGTGGGGCGAGTTTAAGGT
GTGCGAGAGACACATCACCATGGATGACCTGTCCACCGCCCTGGAGGAGAACAGAGTGAAGGAG
ATGTTCGGCTCGGGGACAGCCTGCGTTGTCTGCCCAGTTGCCAGTATTCTGTACAAGGGCCAGA
TGCTGCACATTCCAACCATGGAGAATGGCCACAAGCTTTCAAGTCGCATCATGGCAAAGTTGAC
TGATATCCAGTATGGACGGATCAAGAGCGAATGGACACTGGAGTTGCCCTAATGGGAGAGCTCA
GGGTATCGGTGACGGGGTGCCACAGAAGACCGACTCCTGTCCTCGAGCTGGGACAACCTGTGAC
TATTTTAACTCCTTGTAGTTCCATTGTTCATTGTTACCAAACGAGTTTGTGTCCCCCCCCCCCC
CCGTGAGCCAAGAAAATTGCCAGTGTTAAGTGTCACCTGTGAACATGATAGTAGCTGCTTTACT
GTACCTTTCCTTGGAAAGCTATCAATGAATAATTGCCTCCCCTCACTCCATACCAGATCCTTAG
TAGGAGAATGGGTTCCCCCACCAATGAGATGACTGTGTGCTGGAAGGGCTACTGAGGAAATGCC
ATAGGCGGCCTCCCTGTGACTCATGGGCACCCTCAGAGCGGGAGCCCTTTGTTACTTTTGCTGG
CTGGTAAGGTTCTGTTGTTTACGTTTTTGTTTGTTTGTTTCTAATTGGGGAAGATTTGGGCTCC
CTGTGAAGCCCTGCTGGCCTGGTATTCCGTGATGTCTGCCCAGGCTGGTCTCAGACTCGGAGCG
GGTCTTCCTGTCTCACACAGCCTTCTGGATGCTGGGGCGATGGACAGGTGTGATACCTTGATTT
GTTTCTGTCTTTTAAACAAAAGTTTGGTCGGCTGGATTTCGTTTCTCCGCGCTTCTGTAAGTCC
CTGAGTCCGCGCTAAGGTGACCGTGCCCCTTCTTGGTATCATGGCCTGCACTAATGTCACCGAA
GGTGTCTGTGAGGCTCACTGCCCTTTTTCTGTAACTATACCTGGCTGCTCACTGCGCTGCTATG
AGACTAGGGGTCCTGTGCCTTCTAGATCTTTGTATCCTCAAAGCCCAGCACATAGTAAGTATTC
AGTACTTGTTTACCATGAGAATGAACATAGAAGTGTACTTTCTGTCTCTCCATGCTGAAACCCT
TTCGGAAACCACGCCTGATTCGGGCAGCATGTAGCAGTATTTATCTTAGGCTGTCTTTCTTGTC
CCTGGACTCCTCCAGACAGCATGGAGGAATTCTGTTTTAAGATTATCTTGGAGTTTAAGTGATT
GCCCTGGAAAAATGAAATGTACCAACCATGTGGAAATGACAGCTACTGTACATTATGTATGAAA
TGCCAAATAAAGGGACAAGTTGGGAGATAAA

hide sequence

RefSeq Acc Id:

XM_039107212 ⟹ XP_038963140

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	177,964,834 - 178,046,518 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001380930	(Get FASTA)	NCBI Sequence Viewer
	NP_058949	(Get FASTA)	NCBI Sequence Viewer
	XP_008761592	(Get FASTA)	NCBI Sequence Viewer
	XP_008761594	(Get FASTA)	NCBI Sequence Viewer
	XP_008761595	(Get FASTA)	NCBI Sequence Viewer
	XP_038963140	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC52385	(Get FASTA)	NCBI Sequence Viewer
	AAD47083	(Get FASTA)	NCBI Sequence Viewer
	AAH87710	(Get FASTA)	NCBI Sequence Viewer
	CAC34479	(Get FASTA)	NCBI Sequence Viewer
	CBN62939	(Get FASTA)	NCBI Sequence Viewer
	EDM01445	(Get FASTA)	NCBI Sequence Viewer
	EDM01446	(Get FASTA)	NCBI Sequence Viewer
	EDM01447	(Get FASTA)	NCBI Sequence Viewer
	EDM01448	(Get FASTA)	NCBI Sequence Viewer
	EDM01449	(Get FASTA)	NCBI Sequence Viewer
	EDM01450	(Get FASTA)	NCBI Sequence Viewer
	EDM01451	(Get FASTA)	NCBI Sequence Viewer
	EDM01452	(Get FASTA)	NCBI Sequence Viewer
	EDM01453	(Get FASTA)	NCBI Sequence Viewer
	EDM01454	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021193
	ENSRNOP00000021193.5
	ENSRNOP00000074245
	ENSRNOP00000074245.1
	ENSRNOP00000082839
	ENSRNOP00000082839.1
	ENSRNOP00000085607
	ENSRNOP00000085607.1
	ENSRNOP00000090195
	ENSRNOP00000090195.1
	ENSRNOP00000093677.1
GenBank Protein	P54690	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_058949 ⟸ NM_017253
- Peptide Label:	isoform 1
- UniProtKB:	P54690 (UniProtKB/Swiss-Prot), A6IMZ1 (UniProtKB/TrEMBL), A6IMZ3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAYLSRATATLARQDCSNGCSASYAEEEELEASTESYDEEGGSEASTQTFRAKDLIITKADVLK KKPDPSSLVFGASFTDHMLMVEWTSKYGWDKPHIKPFENLSIHPAASVLHYAVELFEGLKAFRG VDNKIRLFRPDLNMKRMCRSAVRTTLPEFDKEELLQCVLQLIQLDREWVPYSTSASLYIRPTFI GIEPSLGVKKPSKALLFVILSPVGSYFSNGTFSPVSLWANPKFVRSWKGGTGDFKMGCNYGSSL LAQCEAAENGCHQVLWLYGKENRITEVGTMNLFLYWINKDGEEELATPPLDGVILPGVTRQSIL ELGEEWGEFKVCERHITMDDLSTALEENRVKEMFGSGTACVVCPVASILYKGQMLHIPTMENGH KLSSRIMAKLTDIQYGRIKSEWTLELP hide sequence

RefSeq Acc Id:	XP_008761594 ⟸ XM_008763372
- Peptide Label:	isoform X2
- UniProtKB:	Q99JD5 (UniProtKB/TrEMBL), A0A0G2K7K5 (UniProtKB/TrEMBL), A6IMZ3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKDCSNGCSASYAEEEELEASTESYDEEGGSEASTQTFRAKDLIITKADVLKKKPDPSSLVFGA SFTDHMLMVEWTSKYGWDKPHIKPFENLSIHPAASVLHYAVELFEGLKAFRGVDNKIRLFRPDL NMKRMCRSAVRTTLPEFDKEELLQCVLQLIQLDREWVPYSTSASLYIRPTFIGIEPSLGVKKPS KALLFVILSPVGSYFSNGTFSPVSLWANPKFVRSWKGGTGDFKMGCNYGSSLLAQCEAAENGCH QVLWLYGKENRITEVGTMNLFLYWINKDGEEELATPPLDGVILPGVTRQSILELGEEWGEFKVC ERHITMDDLSTALEENRVKEMFGSGTACVVCPVASILYKGQMLHIPTMENGHKLSSRIMAKLTD IQYGRIKSEWTLELP hide sequence

RefSeq Acc Id:	XP_008761592 ⟸ XM_008763370
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZVC5 (UniProtKB/TrEMBL), A6IMZ3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRKTRRLSQRMQGLGDARSQRRSPLGNSGMEDCSNGCSASYAEEEELEASTESYDEEGGSEAST QTFRAKDLIITKADVLKKKPDPSSLVFGASFTDHMLMVEWTSKYGWDKPHIKPFENLSIHPAAS VLHYAVELFEGLKAFRGVDNKIRLFRPDLNMKRMCRSAVRTTLPEFDKEELLQCVLQLIQLDRE WVPYSTSASLYIRPTFIGIEPSLGVKKPSKALLFVILSPVGSYFSNGTFSPVSLWANPKFVRSW KGGTGDFKMGCNYGSSLLAQCEAAENGCHQVLWLYGKENRITEVGTMNLFLYWINKDGEEELAT PPLDGVILPGVTRQSILELGEEWGEFKVCERHITMDDLSTALEENRVKEMFGSGTACVVCPVAS ILYKGQMLHIPTMENGHKLSSRIMAKLTDIQYGRIKSEWTLELP hide sequence

RefSeq Acc Id:	XP_008761595 ⟸ XM_008763373
- Peptide Label:	isoform X4
- UniProtKB:	A6IMZ4 (UniProtKB/TrEMBL), A0A8L2QAQ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDCSNGCSASYAEEEELEASTESYDEEGGSEASTQTFRAKDLIITKADVLKKKPDPSSLVFGAS FTDHMLMVEWTSKYGWDKPHIKPFENLSIHPAASVLHYAVELFEGLKAFRGVDNKIRLFRPDLN MKRMCRSAVRTTLPEFDKEELLQCVLQLIQLDREWVPYSTSASLYIRPTFIGIEPSLGVKKPSK ALLFVILSPVGSYFSNGTFSPVSLWANPKFVRSWKGGTGDFKMGCNYGSSLLAQCEAAENGCHQ VLWLYGKENRITEVGTMNLFLYWINKDGEEELATPPLDGVILPGVTRQSILELGEEWGEFKVCE RHITMDDLSTALEENRVKEMFGSGTACVVCPVASILYKGQMLHIPTMENGHKLSSRIMAKLTDI QYGRIKSEWTLELP hide sequence

RefSeq Acc Id:

ENSRNOP00000074245 ⟸ ENSRNOT00000080410

RefSeq Acc Id:

ENSRNOP00000021193 ⟸ ENSRNOT00000021193

RefSeq Acc Id:	XP_038963140 ⟸ XM_039107212
- Peptide Label:	isoform X3
- UniProtKB:	Q99JD5 (UniProtKB/TrEMBL), A0A0G2K7K5 (UniProtKB/TrEMBL), A6IMZ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000082839 ⟸ ENSRNOT00000120070

RefSeq Acc Id:

ENSRNOP00000090195 ⟸ ENSRNOT00000117044

RefSeq Acc Id:

ENSRNOP00000093677 ⟸ ENSRNOT00000097702

RefSeq Acc Id:

ENSRNOP00000085607 ⟸ ENSRNOT00000119115

RefSeq Acc Id:	NP_001380930 ⟸ NM_001394001
- Peptide Label:	isoform 2
- UniProtKB:	Q99JD5 (UniProtKB/TrEMBL), A0A0G2K7K5 (UniProtKB/TrEMBL), A6IMZ3 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P54690-F1-model_v2	AlphaFold	P54690	1-411	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693495

Promoter ID:

EPDNEW_R4020

Type:

initiation region

Name:

Bcat1_2

Description:

branched chain amino acid transaminase 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R4021

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	179,307,089 - 179,307,149	EPDNEW

RGD ID:

13693500

Promoter ID:

EPDNEW_R4021

Type:

initiation region

Name:

Bcat1_1

Description:

branched chain amino acid transaminase 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R4020

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	179,339,774 - 179,339,834	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2195	AgrOrtholog
BioCyc Gene	G2FUF-42461	BioCyc
Ensembl Genes	ENSRNOG00000015514	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021193	ENTREZGENE
	ENSRNOT00000021193.8	UniProtKB/TrEMBL
	ENSRNOT00000080410	ENTREZGENE
	ENSRNOT00000080410.2	UniProtKB/TrEMBL
	ENSRNOT00000097702.1	UniProtKB/TrEMBL
	ENSRNOT00000117044	ENTREZGENE
	ENSRNOT00000117044.1	UniProtKB/TrEMBL
	ENSRNOT00000119115	ENTREZGENE
	ENSRNOT00000119115.1	UniProtKB/TrEMBL
	ENSRNOT00000120070	ENTREZGENE
	ENSRNOT00000120070.1	UniProtKB/TrEMBL
Gene3D-CATH	3.20.10.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.30.470.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7315507	IMAGE-MGC_LOAD
InterPro	Aminotrans_IV	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Aminotrans_IV_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Aminotransferase-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	B_amino_transII	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	BCAT-like_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	BCAT-like_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	BCAT_family	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:29592	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105472	IMAGE-MGC_LOAD
NCBI Gene	29592	ENTREZGENE
PANTHER	BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE, CYTOSOLIC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR11825	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Aminotran_4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Bcat1	PhenoGen
PIRSF	BCAT1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	AA_TRANSFER_CLASS_4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000015514	RatGTEx
Superfamily-SCOP	SSF56752	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K7K5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZVC5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A0J2_RAT	UniProtKB/TrEMBL
	A0A8I6AKH8_RAT	UniProtKB/TrEMBL
	A0A8L2QAQ9	ENTREZGENE, UniProtKB/TrEMBL
	A6IMY5_RAT	UniProtKB/TrEMBL
	A6IMY6_RAT	UniProtKB/TrEMBL
	A6IMY7_RAT	UniProtKB/TrEMBL
	A6IMY8_RAT	UniProtKB/TrEMBL
	A6IMZ1	ENTREZGENE, UniProtKB/TrEMBL
	A6IMZ3	ENTREZGENE, UniProtKB/TrEMBL
	A6IMZ4	ENTREZGENE, UniProtKB/TrEMBL
	BCAT1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q99JD5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-28	Bcat1	branched chain amino acid transaminase 1, cytosolic	Bcat1	branched chain aminotransferase 1, cytosolic	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-06-10	Bcat1	branched chain aminotransferase 1, cytosolic			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in the substantia nigra	631308
gene_function	transferase	631308
gene_process	may play a role in maintaining neuronal viability following striatal target injury	631308
gene_protein	46.0 kDa	69773
gene_regulation	mRNA is upregulated in neurons following striatal target injury	631308

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)