Eif3e (eukaryotic translation initiation factor 3 subunit E) - Rat Genome Database

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Gene: Eif3e (eukaryotic translation initiation factor 3 subunit E) Rattus norvegicus
Analyze
Symbol: Eif3e
Name: eukaryotic translation initiation factor 3 subunit E
RGD ID: 1311521
Description: Enables transmembrane transporter binding activity. Involved in intracellular calcium ion homeostasis and positive regulation of intracellular protein transport. Predicted to be located in cytosol. Predicted to be part of eukaryotic translation initiation factor 3 complex. Predicted to be active in nucleus and postsynaptic density. Predicted to colocalize with PML body. Used to study intermittent claudication. Orthologous to human EIF3E (eukaryotic translation initiation factor 3 subunit E); PARTICIPATES IN hypoxia inducible factor pathway; translation initiation pathway; hepatitis C pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: eIF-3 p48; Eif3el1; Eif3s6; eukaryotic translation initiation factor 3 subunit 6; eukaryotic translation initiation factor 3, subunit 6; eukaryotic translation initiation factor 3, subunit E; eukaryotic translation initiation factor 3, subunit E-like 1; LOC299872
RGD Orthologs
Human
Mouse
Alliance Genes
More Info more info ...
Related Pseudogenes: Eif3e-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2774,339,848 - 74,372,483 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl774,339,828 - 74,373,096 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx776,191,489 - 76,224,165 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0778,393,972 - 78,426,652 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0778,262,071 - 78,294,759 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013100,129,757 - 100,162,596 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13100,129,761 - 100,162,461 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013105,112,034 - 105,144,806 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera771,344,789 - 71,377,414 (-)NCBICelera
Cytogenetic Map7q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Eukaryotic translation initiation factor 3 subunit e controls intracellular calcium homeostasis by regulation of cav1.2 surface expression. Buda P, etal., PLoS One. 2013 May 30;8(5):e64462. doi: 10.1371/journal.pone.0064462. Print 2013.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. The scanning mechanism of eukaryotic translation initiation. Hinnebusch AG Annu Rev Biochem. 2014;83:779-812. doi: 10.1146/annurev-biochem-060713-035802. Epub 2014 Jan 29.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Int6 silencing causes induction of angiogenic factors in neuronal cells via accumulation of hypoxia-inducible factor 2alpha and decreases brain damage in rats. Miyashita R, etal., Neurosci Lett. 2012 Oct 18;528(1):83-8. doi: 10.1016/j.neulet.2012.08.033. Epub 2012 Aug 28.
6. Silencing of int6 gene restores function of the ischaemic hindlimb in a rat model of peripheral arterial disease. Okamoto N, etal., Cardiovasc Res. 2011 Nov 1;92(2):209-17. doi: 10.1093/cvr/cvr203. Epub 2011 Jul 19.
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:23106098   PMID:29895936   PMID:30053369  


Genomics

Comparative Map Data
Eif3e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2774,339,848 - 74,372,483 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl774,339,828 - 74,373,096 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx776,191,489 - 76,224,165 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0778,393,972 - 78,426,652 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0778,262,071 - 78,294,759 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013100,129,757 - 100,162,596 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13100,129,761 - 100,162,461 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013105,112,034 - 105,144,806 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera771,344,789 - 71,377,414 (-)NCBICelera
Cytogenetic Map7q31NCBI
EIF3E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388108,201,216 - 108,248,717 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8108,162,787 - 108,443,496 (-)EnsemblGRCh38hg38GRCh38
GRCh378109,213,445 - 109,260,946 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368109,283,148 - 109,330,135 (-)NCBINCBI36Build 36hg18NCBI36
Build 348109,283,148 - 109,330,128NCBI
Celera8105,401,123 - 105,448,104 (-)NCBICelera
Cytogenetic Map8q23.1NCBI
HuRef8104,535,352 - 104,582,408 (-)NCBIHuRef
CHM1_18109,254,211 - 109,301,195 (-)NCBICHM1_1
T2T-CHM13v2.08109,329,722 - 109,377,212 (-)NCBIT2T-CHM13v2.0
Eif3e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391543,113,436 - 43,146,132 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1543,113,454 - 43,146,115 (-)EnsemblGRCm39 Ensembl
GRCm381543,250,040 - 43,282,736 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1543,250,058 - 43,282,719 (-)EnsemblGRCm38mm10GRCm38
MGSCv371543,081,586 - 43,114,282 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361543,080,127 - 43,112,771 (-)NCBIMGSCv36mm8
Celera1543,733,344 - 43,766,034 (-)NCBICelera
Cytogenetic Map15B3.2NCBI
cM Map1516.73NCBI

Variants

.
Variants in Eif3e
103 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:10
Count of miRNA genes:10
Interacting mature miRNAs:10
Transcripts:ENSRNOT00000038340
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat

Markers in Region
RH130017  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2173,775,663 - 73,775,883 (-)MAPPERmRatBN7.2
Rnor_6.0166,637,827 - 66,638,046NCBIRnor6.0
Rnor_6.0166,643,832 - 66,644,051NCBIRnor6.0
Rnor_5.0167,444,206 - 67,444,425UniSTSRnor5.0
Rnor_5.0167,438,201 - 67,438,420UniSTSRnor5.0
RH 3.4 Map1765.59UniSTS
Cytogenetic Map7q31UniSTS
PMC290270P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2173,774,544 - 73,774,830 (-)MAPPERmRatBN7.2
Rnor_6.0166,644,885 - 66,645,170NCBIRnor6.0
Rnor_6.0166,638,880 - 66,639,165NCBIRnor6.0
Rnor_5.0167,445,259 - 67,445,544UniSTSRnor5.0
Rnor_5.0167,439,254 - 67,439,539UniSTSRnor5.0
Cytogenetic Map7q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000038340   ⟹   ENSRNOP00000029790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl774,339,828 - 74,372,526 (-)Ensembl
Rnor_6.0 Ensembl13100,129,761 - 100,162,461 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097612   ⟹   ENSRNOP00000086410
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl774,340,653 - 74,372,547 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112962   ⟹   ENSRNOP00000088634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl774,339,828 - 74,373,096 (-)Ensembl
RefSeq Acc Id: NM_001011990   ⟹   NP_001011990
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2774,339,848 - 74,372,483 (-)NCBI
Rnor_6.013100,129,757 - 100,162,596 (+)NCBI
Rnor_5.013105,112,034 - 105,144,806 (+)NCBI
RGSC_v3.4779,013,224 - 79,045,970 (-)RGD
Celera771,344,789 - 71,377,414 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001011990 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH82087 (Get FASTA)   NCBI Sequence Viewer  
  EDM16318 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000029790.5
  ENSRNOP00000086410
  ENSRNOP00000086410.1
  ENSRNOP00000088634.1
GenBank Protein Q641X8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001011990   ⟸   NM_001011990
- UniProtKB: Q641X8 (UniProtKB/Swiss-Prot),   A6HRA4 (UniProtKB/TrEMBL),   A0A8L2QFS8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000029790   ⟸   ENSRNOT00000038340
RefSeq Acc Id: ENSRNOP00000086410   ⟸   ENSRNOT00000097612
RefSeq Acc Id: ENSRNOP00000088634   ⟸   ENSRNOT00000112962
Protein Domains
PCI

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q641X8-F1-model_v2 AlphaFold Q641X8 1-445 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699070
Promoter ID:EPDNEW_R9595
Type:multiple initiation site
Name:LOC108348260_1
Description:eukaryotic translation initiation factor 3 subunit E
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.013100,129,745 - 100,129,805EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311521 AgrOrtholog
BioCyc Gene G2FUF-33493 BioCyc
Ensembl Genes ENSRNOG00000027690 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038340.6 UniProtKB/TrEMBL
  ENSRNOT00000097612 ENTREZGENE
  ENSRNOT00000097612.1 UniProtKB/TrEMBL
  ENSRNOT00000112962.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7133833 IMAGE-MGC_LOAD
InterPro eIF3e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  eIF3e_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PCI_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:299872 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:95265 IMAGE-MGC_LOAD
NCBI Gene 299872 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10317 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam eIF3_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EIF3E_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PCI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Eif3e PhenoGen
PIRSF eIF3e_su6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PCI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000027690 RatGTEx
SMART eIF3_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PINT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A5S4_RAT UniProtKB/TrEMBL
  A0A8I6AJ91_RAT UniProtKB/TrEMBL
  A0A8L2QFS8 ENTREZGENE, UniProtKB/TrEMBL
  A6HRA3_RAT UniProtKB/TrEMBL
  A6HRA4 ENTREZGENE, UniProtKB/TrEMBL
  EIF3E_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-03-21 Eif3e  eukaryotic translation initiation factor 3 subunit E  Eif3el1  eukaryotic translation initiation factor 3, subunit E-like 1  Name and Symbol changed 629549 APPROVED
2016-01-29 Eif3el1  eukaryotic translation initiation factor 3, subunit E-like 1  Eif3e  eukaryotic translation initiation factor 3, subunit E  Name and Symbol changed 629549 APPROVED
2008-03-04 Eif3e  eukaryotic translation initiation factor 3, subunit E  Eif3s6  eukaryotic translation initiation factor 3, subunit 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Eif3s6  eukaryotic translation initiation factor 3, subunit 6  Eif3s6_predicted  eukaryotic translation initiation factor 3, subunit 6 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Eif3s6_predicted  eukaryotic translation initiation factor 3, subunit 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED