Trh (thyrotropin releasing hormone) - Rat Genome Database

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Gene: Trh (thyrotropin releasing hormone) Rattus norvegicus
Analyze
Symbol: Trh
Name: thyrotropin releasing hormone
RGD ID: 3903
Description: Enables thyrotropin-releasing hormone activity. Involved in several processes, including negative regulation of feeding behavior; regulation of secretion; and response to corticosterone. Located in secretory granule. Used to study hypertension. Biomarker of hypothyroidism. Orthologous to human TRH (thyrotropin releasing hormone); INTERACTS WITH (+)-pilocarpine; 1,3,5-trinitro-1,3,5-triazinane; 17beta-estradiol.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: pro-thyrotropin-releasing hormone; Pro-TRH; prothyroliberin; protirelin; THR; thyrotropin-releasing factor; thyrotropin-releasing hormone; Trf; TRH01; Tryrotropin releasing hormone; TSH-releasing factor
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Candidate Gene For: Ept5
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84126,299,236 - 126,301,762 (-)NCBIGRCr8
mRatBN7.24124,742,111 - 124,777,094 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4124,742,111 - 124,744,637 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4130,209,920 - 130,212,447 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04125,984,348 - 125,986,875 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04124,608,890 - 124,611,417 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04124,110,716 - 124,113,242 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4124,110,716 - 124,113,242 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04189,116,103 - 189,151,296 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44126,425,212 - 126,427,670 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14126,670,058 - 126,672,508 (-)NCBI
Celera4113,659,987 - 113,662,513 (-)NCBICelera
RH 3.4 Map4736.33RGD
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (EXP)
1,3,5-trinitro-1,3,5-triazinane  (EXP)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2-(3,4-dimethoxyphenyl)-5-\{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino\}-2-(propan-2-yl)pentanenitrile  (ISO)
2-palmitoylglycerol  (ISO)
3,7-dihydropurine-6-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
adinazolam  (EXP)
all-trans-retinoic acid  (EXP,ISO)
alprazolam  (EXP)
amitriptyline  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon dioxide  (ISO)
chlordiazepoxide  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
Cuprizon  (EXP)
cyclohexane  (EXP)
decabromodiphenyl ether  (EXP)
dexamethasone  (EXP)
dextran sulfate  (ISO)
diazepam  (EXP)
disodium selenite  (ISO)
disulfiram  (EXP)
doxorubicin  (ISO)
erythrosin B  (EXP)
estazolam  (EXP)
ethanol  (ISO)
fenvalerate  (EXP)
flurazepam  (EXP)
fonofos  (ISO)
genistein  (ISO)
glyphosate  (ISO)
kainic acid  (EXP)
ketamine  (EXP)
L-ascorbic acid  (ISO)
lead(0)  (ISO)
melatonin  (ISO)
mercaptopurine  (EXP)
methapyrilene  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
midazolam  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
Monobutylphthalate  (EXP)
morphine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
octreotide  (ISO)
okadaic acid  (EXP)
oxidopamine  (EXP)
ozone  (EXP)
paracetamol  (ISO)
parathion  (ISO)
phorbol 13-acetate 12-myristate  (EXP,ISO)
progesterone  (EXP)
protein kinase inhibitor  (ISO)
purine-6-thiol  (EXP)
resveratrol  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium perchlorate  (EXP)
streptozocin  (EXP)
sunitinib  (ISO)
terbufos  (ISO)
titanium dioxide  (ISO)
toluene  (EXP)
triazolam  (EXP)
triclosan  (ISO)
valproic acid  (ISO)
verapamil  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Colchicine treatment differently affects releasable thyrotropin-releasing hormone (TRH) pools in the hypothalamic paraventricular nucleus (PVN) and the median eminence (ME). Alexander K, etal., Cell Mol Neurobiol. 2005 Jun;25(3-4):681-95.
2. Thyrotropin-releasing hormone regulates the diurnal variation of pyroglutamyl aminopeptidase II activity in the male rat adenohypophysis. Angel Vargas M, etal., Eur J Endocrinol 2002 Sep;147(3):363-9.
3. Brainstem thyrotropin-releasing hormone regulates food intake through vagal-dependent cholinergic stimulation of ghrelin secretion. Ao Y, etal., Endocrinology. 2006 Dec;147(12):6004-10. Epub 2006 Sep 7.
4. Effect of neonatal streptozotocin and thyrotropin-releasing hormone treatments on insulin secretion in adult rats. Bacova Z, etal., Gen Physiol Biophys. 2005 Jun;24(2):181-97.
5. Vasopressin and oxytocin release as influenced by thyrotropin-releasing hormone in euhydrated and dehydrated rats. Ciosek J J Physiol Pharmacol 2002 Sep;53(3):423-37.
6. Chronic ethanol or glucose consumption alter TRH content and pyroglutamyl aminopeptidase II activity in rat limbic regions. de Gortari P, etal., Regul Pept. 2005 Apr 15;127(1-3):141-50.
7. Thyrotropin-releasing hormone increases GABA release in rat hippocampus. Deng PY, etal., J Physiol. 2006 Dec 1;577(Pt 2):497-511. Epub 2006 Sep 21.
8. Cellular colocalization and coregulation between hypothalamic pro-TRH and prohormone convertases in hypothyroidism. Espinosa VP, etal., Am J Physiol Endocrinol Metab. 2007 Jan;292(1):E175-86. Epub 2006 Aug 22.
9. Cold stress induces metabolic activation of thyrotrophin-releasing hormone-synthesising neurones in the magnocellular division of the hypothalamic paraventricular nucleus and concomitantly changes ovarian sympathetic activity parameters. Fiedler J, etal., J Neuroendocrinol. 2006 May;18(5):367-76.
10. Thyrotropin-releasing hormone decreases leptin and mediates the leptin-induced pressor effect. Garcia SI, etal., Hypertension 2002 Feb;39(2 Pt 2):491-5.
11. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
12. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
13. Hypothalamic neuronal histamine mediates the thyrotropin-releasing hormone-induced suppression of food intake. Gotoh K, etal., J Neurochem. 2007 Nov;103(3):1102-10. Epub 2007 Aug 30.
14. Norepinephrine attenuates hypoxia-inhibited thyrotropin-releasing hormone release in median eminence and paraventricular nucleus of rat hypothalamus. Hou TD and Du JZ, Neuro Endocrinol Lett. 2005 Feb;26(1):43-9.
15. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
16. KNOCKING DOWN OF THE DIENCEPHALIC THYROTROPIN-RELEASING HORMONE PRECURSOR GENE NORMALIZES OBESITY-INDUCED HYPERTENSION IN THE RAT. Landa MS, etal., Am J Physiol Endocrinol Metab. 2007 Jan 16;.
17. Thyrotropin-releasing hormone precursor: characterization in rat brain. Lechan RM, etal., Science 1986 Jan 10;231(4734):159-61.
18. Characterization and expression of the gene-encoding rat thyrotropin-releasing hormone (TRH). Lee SL, etal., Ann N Y Acad Sci 1989;553:14-28.
19. Structure of the gene encoding rat thyrotropin releasing hormone. Lee SL, etal., J Biol Chem 1988 Nov 15;263(32):16604-9.
20. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
21. Immunocytochemical evidence for in vivo internalization of thyroliberin into rat pituitary target cells. Morel G, etal., Neuroendocrinology. 1985 Oct;41(4):312-20.
22. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
23. Thyrotropin-releasing hormone (protirelin) inhibits potassium-stimulated glutamate and aspartate release from hippocampal slices in vitro. Nie Y, etal., Brain Res. 2005 Aug 23;1054(1):45-54.
24. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
25. Rapid modulation of TRH and TRH-like peptide levels in rat brain and peripheral tissues by corticosterone. Pekary AE, etal., Neurochem Int. 2006 Feb;48(3):208-17. Epub 2005 Nov 15.
26. GOA pipeline RGD automated data pipeline
27. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
28. Localization of 54 rat genes, and definition of new synteny groups conserved in the human and the rat. Szpirer C, etal., Mamm Genome 2000 Sep;11(9):729-35
Additional References at PubMed
PMID:2119297   PMID:8719807   PMID:12456804   PMID:12477932   PMID:14691017   PMID:14764629   PMID:15096458   PMID:15345675   PMID:15486233   PMID:15604205   PMID:15691887   PMID:15707699  
PMID:15750838   PMID:15908131   PMID:16098513   PMID:16204236   PMID:16310891   PMID:16627588   PMID:17416971   PMID:17553064   PMID:17584968   PMID:17726229   PMID:17854778   PMID:18191132  
PMID:18427988   PMID:18467436   PMID:18474603   PMID:18779326   PMID:19302192   PMID:19602869   PMID:19617647   PMID:20074584   PMID:20136691   PMID:21085660   PMID:21135357   PMID:21182892  
PMID:21266205   PMID:21569245   PMID:22354782   PMID:22719053   PMID:22785235   PMID:22884559   PMID:22889935   PMID:22911445   PMID:22960404   PMID:22981312   PMID:22985455   PMID:23063458  
PMID:23106615   PMID:23297311   PMID:23321476   PMID:23327999   PMID:23333484   PMID:23524276   PMID:23537088   PMID:23701881   PMID:24370184   PMID:24464021   PMID:24713470   PMID:25281568  
PMID:25448845   PMID:25942072   PMID:26315400   PMID:26626087   PMID:29057835   PMID:32227104   PMID:32980456   PMID:34043769  


Genomics

Comparative Map Data
Trh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84126,299,236 - 126,301,762 (-)NCBIGRCr8
mRatBN7.24124,742,111 - 124,777,094 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4124,742,111 - 124,744,637 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4130,209,920 - 130,212,447 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04125,984,348 - 125,986,875 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04124,608,890 - 124,611,417 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04124,110,716 - 124,113,242 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4124,110,716 - 124,113,242 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04189,116,103 - 189,151,296 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44126,425,212 - 126,427,670 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14126,670,058 - 126,672,508 (-)NCBI
Celera4113,659,987 - 113,662,513 (-)NCBICelera
RH 3.4 Map4736.33RGD
Cytogenetic Map4q34NCBI
TRH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383129,974,720 - 129,977,935 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3129,974,688 - 129,977,935 (+)EnsemblGRCh38hg38GRCh38
GRCh373129,693,563 - 129,696,778 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363131,176,253 - 131,179,470 (+)NCBINCBI36Build 36hg18NCBI36
Build 343131,176,260 - 131,179,478NCBI
Celera3128,120,232 - 128,123,896 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3127,076,564 - 127,080,109 (+)NCBIHuRef
CHM1_13129,656,247 - 129,659,792 (+)NCBICHM1_1
T2T-CHM13v2.03132,718,521 - 132,721,736 (+)NCBIT2T-CHM13v2.0
Trh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39692,219,042 - 92,221,631 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl692,219,042 - 92,221,631 (-)EnsemblGRCm39 Ensembl
GRCm38692,242,061 - 92,244,650 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl692,242,061 - 92,244,650 (-)EnsemblGRCm38mm10GRCm38
MGSCv37692,192,056 - 92,194,642 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36692,207,565 - 92,209,391 (-)NCBIMGSCv36mm8
Celera694,137,673 - 94,140,256 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map641.03NCBI
Trh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542917,487,275 - 17,489,385 (-)NCBIChiLan1.0ChiLan1.0
TRH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22127,905,957 - 127,911,897 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13127,910,679 - 127,916,625 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03127,037,069 - 127,041,299 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13134,383,016 - 134,386,541 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3134,383,016 - 134,387,736 (+)Ensemblpanpan1.1panPan2
TRH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1205,219,495 - 5,222,914 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl205,219,594 - 5,222,866 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha205,256,400 - 5,324,009 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0205,240,648 - 5,307,811 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl205,240,655 - 5,244,046 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1204,958,873 - 5,026,447 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0205,309,588 - 5,376,738 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0205,293,272 - 5,360,877 (-)NCBIUU_Cfam_GSD_1.0
Trh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494218,283,064 - 18,286,124 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936602623,535 - 626,445 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936602623,542 - 626,337 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1369,364,093 - 69,365,493 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11369,362,892 - 69,366,183 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21376,784,937 - 76,833,534 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12251,075,814 - 51,079,852 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2251,076,157 - 51,078,236 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041115,412,012 - 115,415,595 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624872866,365 - 868,739 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624872866,370 - 868,624 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trh
164 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:226
Count of miRNA genes:157
Interacting mature miRNAs:176
Transcripts:ENSRNOT00000015944
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4120260281147278687Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4120926564148090731Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4119463257147278687Rat

Markers in Region
RH128079  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24124,742,158 - 124,742,354 (+)MAPPERmRatBN7.2
Rnor_6.04124,110,764 - 124,110,959NCBIRnor6.0
Rnor_5.04189,151,053 - 189,151,248UniSTSRnor5.0
RGSC_v3.44126,425,226 - 126,425,421UniSTSRGSC3.4
Celera4113,660,035 - 113,660,230UniSTS
RH 3.4 Map4736.04UniSTS
Cytogenetic Map4q34-q41UniSTS
X59387  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24124,742,275 - 124,742,416 (+)MAPPERmRatBN7.2
Rnor_6.04124,110,881 - 124,111,021NCBIRnor6.0
Rnor_5.04189,150,991 - 189,151,131UniSTSRnor5.0
RGSC_v3.44126,425,343 - 126,425,483UniSTSRGSC3.4
Celera4113,660,152 - 113,660,292UniSTS
Cytogenetic Map4q34-q41UniSTS
RH142232  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24124,744,795 - 124,744,985 (+)MAPPERmRatBN7.2
Rnor_6.04124,113,401 - 124,113,590NCBIRnor6.0
Rnor_5.04189,148,422 - 189,148,611UniSTSRnor5.0
RGSC_v3.44126,427,863 - 126,428,052UniSTSRGSC3.4
Celera4113,662,672 - 113,662,861UniSTS
RH 3.4 Map4736.33UniSTS
Cytogenetic Map4q34-q41UniSTS
PMC304098P6  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.04189,150,528 - 189,150,644UniSTSRnor5.0
Cytogenetic Map4q34-q41UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
4 4 40 107 45 50 19 23 19 6 134 80 93 30 58 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC131202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF024518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC161830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ100942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M12138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M36317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000015944   ⟹   ENSRNOP00000015944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4124,742,111 - 124,744,637 (-)Ensembl
Rnor_6.0 Ensembl4124,110,716 - 124,113,242 (-)Ensembl
RefSeq Acc Id: NM_013046   ⟹   NP_037178
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84126,299,236 - 126,301,762 (-)NCBI
mRatBN7.24124,742,111 - 124,744,637 (-)NCBI
Rnor_6.04124,110,716 - 124,113,242 (-)NCBI
Rnor_5.04189,116,103 - 189,151,296 (+)NCBI
RGSC_v3.44126,425,212 - 126,427,670 (-)RGD
Celera4113,659,987 - 113,662,513 (-)NCBI
Sequence:
RefSeq Acc Id: NP_037178   ⟸   NM_013046
- Peptide Label: preproprotein
- UniProtKB: P01150 (UniProtKB/Swiss-Prot),   B1WBP2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000015944   ⟸   ENSRNOT00000015944

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P01150-F1-model_v2 AlphaFold P01150 1-255 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693260
Promoter ID:EPDNEW_R3785
Type:single initiation site
Name:Trh_1
Description:thyrotropin releasing hormone
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04124,113,297 - 124,113,357EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3903 AgrOrtholog
BioCyc Gene G2FUF-43693 BioCyc
Ensembl Genes ENSRNOG00000011824 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00055004440 UniProtKB/Swiss-Prot
  ENSRNOG00060027963 UniProtKB/Swiss-Prot
  ENSRNOG00065025008 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000015944.6 UniProtKB/Swiss-Prot
  ENSRNOT00055007025 UniProtKB/Swiss-Prot
  ENSRNOT00060048546 UniProtKB/Swiss-Prot
  ENSRNOT00065042974 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:9091055 IMAGE-MGC_LOAD
InterPro TRH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:25569 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:187310 IMAGE-MGC_LOAD
NCBI Gene 25569 ENTREZGENE
PANTHER PRO-THYROTROPIN-RELEASING HORMONE UniProtKB/Swiss-Prot
  PRO-THYROTROPIN-RELEASING HORMONE UniProtKB/Swiss-Prot
  PRO-THYROTROPIN-RELEASING HORMONE UniProtKB/TrEMBL
  PRO-THYROTROPIN-RELEASING HORMONE UniProtKB/TrEMBL
Pfam TRH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trh PhenoGen
PIRSF TRH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011824 RatGTEx
  ENSRNOG00055004440 RatGTEx
  ENSRNOG00060027963 RatGTEx
  ENSRNOG00065025008 RatGTEx
UniProt B1WBP2 ENTREZGENE, UniProtKB/TrEMBL
  P01150 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Trh  Tryrotropin releasing hormone      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_process increases vasopressin storage in neurohypophysis, but decreases in hypothalamus 634240