Robo2 (roundabout guidance receptor 2) - Rat Genome Database

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Gene: Robo2 (roundabout guidance receptor 2) Rattus norvegicus
Analyze
Symbol: Robo2
Name: roundabout guidance receptor 2
RGD ID: 620167
Description: Enables axon guidance receptor activity. Involved in axon guidance and spinal cord development. Predicted to be located in axolemma and cell surface. Predicted to be active in neuron projection. Biomarker of transient cerebral ischemia. Human ortholog(s) of this gene implicated in vesicoureteral reflux. Orthologous to human ROBO2 (roundabout guidance receptor 2); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: roundabout (axon guidance receptor, Drosophila) homolog 2; roundabout 2; roundabout 2 (Drosophila); roundabout 2 precursor; roundabout homolog 2; roundabout homolog 2 (Drosophila); roundabout, axon guidance receptor, homolog 2; roundabout, axon guidance receptor, homolog 2 (Drosophila)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81126,015,919 - 27,583,750 (-)NCBIGRCr8
mRatBN7.21112,528,949 - 14,096,726 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1112,528,951 - 13,041,536 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1121,136,938 - 21,653,513 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01113,864,175 - 14,380,772 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01113,032,021 - 13,548,614 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01111,062,866 - 12,618,793 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1111,062,790 - 11,585,765 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01114,733,231 - 16,280,429 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41112,662,391 - 13,174,865 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11112,703,047 - 13,174,870 (-)NCBI
Celera1112,554,755 - 13,062,027 (-)NCBICelera
Cytogenetic Map11p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-citrinin  (ISO)
1,2-dichloroethane  (ISO)
1-naphthyl isothiocyanate  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acetamide  (EXP)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
aluminium sulfate (anhydrous)  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
chlorpyrifos  (EXP)
choline  (ISO)
Cuprizon  (EXP)
dibenz[a,h]anthracene  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
ethylparaben  (ISO)
fipronil  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
glyphosate  (EXP)
hydralazine  (ISO)
L-methionine  (ISO)
lead diacetate  (EXP)
manganese(II) chloride  (EXP)
methapyrilene  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methylmercury chloride  (EXP,ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-nitrosodimethylamine  (EXP)
nickel atom  (EXP,ISO)
nickel sulfate  (EXP)
O-methyleugenol  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
PCB138  (ISO)
perfluorohexanesulfonic acid  (ISO)
phenylmercury acetate  (ISO)
potassium dichromate  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tributylstannane  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
valproic acid  (ISO)
zalcitabine  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Slit proteins bind Robo receptors and have an evolutionarily conserved role in repulsive axon guidance. Brose K, etal., Cell 1999 Mar 19;96(6):795-806.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Increased Expression of Slit2 and its Robo Receptors During Astroglial Scar Formation After Transient Focal Cerebral Ischemia in Rats. Jin X, etal., Neurochem Res. 2016 Dec;41(12):3373-3385. doi: 10.1007/s11064-016-2072-0. Epub 2016 Sep 29.
5. Spatiotemporal expression patterns of slit and robo genes in the rat brain. Marillat V, etal., J Comp Neurol. 2002 Jan 7;442(2):130-55.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Disrupted Slit-Robo signalling results in membranous ventricular septum defects and bicuspid aortic valves. Mommersteeg MT, etal., Cardiovasc Res. 2015 Apr 1;106(1):55-66. doi: 10.1093/cvr/cvv040. Epub 2015 Feb 17.
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Expression of netrin-1, slit-1 and slit-3 but not of slit-2 after cerebellar and spinal cord lesions. Wehrle R, etal., Eur J Neurosci. 2005 Nov;22(9):2134-44.
Additional References at PubMed
PMID:10197527   PMID:11404413   PMID:11748139   PMID:11779479   PMID:12504588   PMID:15084255   PMID:15091338   PMID:15130495   PMID:16625395   PMID:17357069   PMID:17360927   PMID:18566128  
PMID:18986510   PMID:19056867   PMID:19782674   PMID:20172023   PMID:26026792   PMID:33208157  


Genomics

Comparative Map Data
Robo2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81126,015,919 - 27,583,750 (-)NCBIGRCr8
mRatBN7.21112,528,949 - 14,096,726 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1112,528,951 - 13,041,536 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1121,136,938 - 21,653,513 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01113,864,175 - 14,380,772 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01113,032,021 - 13,548,614 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01111,062,866 - 12,618,793 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1111,062,790 - 11,585,765 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01114,733,231 - 16,280,429 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41112,662,391 - 13,174,865 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11112,703,047 - 13,174,870 (-)NCBI
Celera1112,554,755 - 13,062,027 (-)NCBICelera
Cytogenetic Map11p11NCBI
ROBO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38375,906,675 - 77,649,964 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl375,906,695 - 77,649,964 (+)EnsemblGRCh38hg38GRCh38
GRCh37375,955,826 - 77,699,115 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36377,171,984 - 77,779,351 (+)NCBINCBI36Build 36hg18NCBI36
Celera376,699,396 - 78,441,286 (+)NCBICelera
Cytogenetic Map3p12.3NCBI
HuRef375,973,031 - 77,717,615 (+)NCBIHuRef
CHM1_1375,910,357 - 77,652,288 (+)NCBICHM1_1
T2T-CHM13v2.0375,959,914 - 77,704,808 (+)NCBIT2T-CHM13v2.0
Robo2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391673,688,725 - 75,244,331 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1673,688,727 - 74,208,713 (-)EnsemblGRCm39 Ensembl
GRCm381673,891,976 - 75,447,443 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1673,891,839 - 74,411,825 (-)EnsemblGRCm38mm10GRCm38
MGSCv371673,892,551 - 74,411,157 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361673,802,886 - 74,293,900 (-)NCBIMGSCv36mm8
Celera1674,137,198 - 74,644,299 (-)NCBICelera
Cytogenetic Map16C3.1NCBI
cM Map1642.17NCBI
Robo2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540714,305,498 - 14,842,790 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540714,301,689 - 15,549,561 (-)NCBIChiLan1.0ChiLan1.0
ROBO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2276,041,603 - 77,790,211 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1377,188,231 - 77,794,996 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0376,013,780 - 77,764,156 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1378,302,882 - 79,636,211 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl379,030,223 - 79,632,309 (+)Ensemblpanpan1.1panPan2
ROBO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1319,415,390 - 11,047,710 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl319,419,026 - 11,022,392 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha319,420,630 - 11,058,263 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0319,436,477 - 11,072,284 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl319,439,782 - 11,046,906 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1319,391,612 - 11,045,561 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0319,447,797 - 11,083,079 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0319,840,219 - 11,478,685 (-)NCBIUU_Cfam_GSD_1.0
Robo2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497110,624,527 - 11,827,565 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365055,548,164 - 6,094,225 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365055,544,011 - 6,747,417 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ROBO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13177,365,772 - 179,013,542 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113177,365,712 - 179,040,027 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ROBO2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12299,334,033 - 101,101,924 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604165,887,247 - 67,640,347 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Robo2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624745804,797 - 1,390,551 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624745800,963 - 2,121,445 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Robo2
10956 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1276
Count of miRNA genes:348
Interacting mature miRNAs:490
Transcripts:ENSRNOT00000065748
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)11121836709Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)111283104625121472Rat

Markers in Region
D11Rat101  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21112,831,046 - 12,831,293 (+)MAPPERmRatBN7.2
Rnor_6.01111,367,306 - 11,367,552NCBIRnor6.0
Rnor_5.01115,035,502 - 15,035,748UniSTSRnor5.0
RGSC_v3.41112,965,570 - 12,965,817RGDRGSC3.4
RGSC_v3.41112,965,571 - 12,965,817UniSTSRGSC3.4
RGSC_v3.11112,965,570 - 12,965,817RGD
Celera1112,855,183 - 12,855,429UniSTS
RH 2.0 Map11663.6RGD
SHRSP x BN Map112.5899RGD
Cytogenetic Map11p11UniSTS
D11Got9  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21112,769,135 - 12,769,271 (+)MAPPERmRatBN7.2
Rnor_6.01111,303,467 - 11,303,610NCBIRnor6.0
Rnor_5.01114,974,034 - 14,974,177UniSTSRnor5.0
Celera1112,793,718 - 12,793,839UniSTS
RH 2.0 Map11693.1RGD
Cytogenetic Map11p11UniSTS
RH71142  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21112,532,720 - 12,532,904 (+)MAPPERmRatBN7.2
Rnor_6.01111,066,636 - 11,066,819NCBIRnor6.0
Rnor_5.01114,737,001 - 14,737,184UniSTSRnor5.0
RGSC_v3.41112,666,161 - 12,666,344UniSTSRGSC3.4
Celera1112,558,525 - 12,558,708UniSTS
Cytogenetic Map11p11UniSTS
AU048024  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21112,965,586 - 12,965,787 (+)MAPPERmRatBN7.2
Rnor_6.01111,501,152 - 11,501,350NCBIRnor6.0
Rnor_5.01115,168,991 - 15,169,189UniSTSRnor5.0
RGSC_v3.41113,100,423 - 13,100,621UniSTSRGSC3.4
Celera1112,989,389 - 12,989,587UniSTS
Cytogenetic Map11p11UniSTS
RH139555  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21112,555,547 - 12,555,758 (+)MAPPERmRatBN7.2
Rnor_6.01111,089,466 - 11,089,676NCBIRnor6.0
Rnor_5.01114,759,831 - 14,760,041UniSTSRnor5.0
RGSC_v3.41112,688,990 - 12,689,200UniSTSRGSC3.4
Celera1112,581,394 - 12,581,604UniSTS
Cytogenetic Map11p11UniSTS
RH142712  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21113,029,895 - 13,029,995 (+)MAPPERmRatBN7.2
Rnor_6.01111,576,417 - 11,576,516NCBIRnor6.0
Rnor_5.01115,244,296 - 15,244,395UniSTSRnor5.0
RGSC_v3.41113,165,753 - 13,165,852UniSTSRGSC3.4
Celera1113,052,882 - 13,052,981UniSTS
Cytogenetic Map11p11UniSTS
BF404162  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21112,529,051 - 12,529,271 (+)MAPPERmRatBN7.2
Rnor_6.01111,062,967 - 11,063,186NCBIRnor6.0
Rnor_5.01114,733,332 - 14,733,551UniSTSRnor5.0
RGSC_v3.41112,662,492 - 12,662,711UniSTSRGSC3.4
Celera1112,554,856 - 12,555,075UniSTS
Cytogenetic Map11p11UniSTS
RH139722  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21112,531,688 - 12,531,905 (+)MAPPERmRatBN7.2
Rnor_6.01111,065,604 - 11,065,820NCBIRnor6.0
Rnor_5.01114,735,969 - 14,736,185UniSTSRnor5.0
RGSC_v3.41112,665,129 - 12,665,345UniSTSRGSC3.4
Celera1112,557,493 - 12,557,709UniSTS
Cytogenetic Map11p11UniSTS
AU049272  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21112,800,288 - 12,800,522 (+)MAPPERmRatBN7.2
Rnor_6.01111,336,547 - 11,336,780NCBIRnor6.0
Rnor_5.01115,004,743 - 15,004,976UniSTSRnor5.0
RGSC_v3.41112,934,810 - 12,935,043UniSTSRGSC3.4
Celera1112,824,427 - 12,824,660UniSTS
Cytogenetic Map11p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 6 6 64 22 36 6
Low 3 29 49 33 19 33 6 6 10 13 5 5 6
Below cutoff 14 2 2 2 2 4 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001415038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_032106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF182037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ481486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ481487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000065748   ⟹   ENSRNOP00000061003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1112,528,951 - 13,041,536 (-)Ensembl
Rnor_6.0 Ensembl1111,062,790 - 11,214,141 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000066439   ⟹   ENSRNOP00000062759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1112,784,123 - 13,039,221 (-)Ensembl
Rnor_6.0 Ensembl1111,516,350 - 11,585,765 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000088878   ⟹   ENSRNOP00000070966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1112,528,951 - 13,041,536 (-)Ensembl
Rnor_6.0 Ensembl1111,063,331 - 11,585,078 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000090497
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1112,528,951 - 13,041,536 (-)Ensembl
Rnor_6.0 Ensembl1111,089,239 - 11,585,378 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093706   ⟹   ENSRNOP00000076252
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1112,532,041 - 13,041,536 (-)Ensembl
Rnor_6.0 Ensembl1111,067,791 - 11,213,821 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099822   ⟹   ENSRNOP00000089188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1112,528,951 - 13,041,536 (-)Ensembl
RefSeq Acc Id: NM_001415038   ⟹   NP_001401967
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,015,919 - 26,526,412 (-)NCBI
mRatBN7.21112,528,949 - 13,039,427 (-)NCBI
RefSeq Acc Id: NM_032106   ⟹   NP_115289
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,015,919 - 26,526,412 (-)NCBI
mRatBN7.21112,528,949 - 13,039,427 (-)NCBI
Rnor_6.01111,062,866 - 11,585,534 (-)NCBI
Rnor_5.01114,733,231 - 16,280,429 (-)NCBI
RGSC_v3.41112,662,391 - 13,174,865 (-)RGD
Celera1112,554,755 - 13,062,027 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768538   ⟹   XP_008766760
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,608 (-)NCBI
mRatBN7.21112,528,949 - 13,709,940 (-)NCBI
Rnor_6.01111,062,866 - 12,259,938 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768539   ⟹   XP_008766761
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,202 (-)NCBI
mRatBN7.21112,528,949 - 13,709,918 (-)NCBI
Rnor_6.01111,062,866 - 12,259,931 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598079   ⟹   XP_017453568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,871 (-)NCBI
mRatBN7.21112,528,949 - 13,709,953 (-)NCBI
Rnor_6.01111,062,866 - 12,259,941 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598082   ⟹   XP_017453571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,605 (-)NCBI
mRatBN7.21112,528,949 - 13,709,935 (-)NCBI
Rnor_6.01111,062,866 - 12,259,936 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598084   ⟹   XP_017453573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,604 (-)NCBI
mRatBN7.21112,528,949 - 13,709,935 (-)NCBI
Rnor_6.01111,062,866 - 12,259,936 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088671   ⟹   XP_038944599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,879 (-)NCBI
mRatBN7.21112,528,949 - 13,710,007 (-)NCBI
RefSeq Acc Id: XM_039088672   ⟹   XP_038944600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,879 (-)NCBI
mRatBN7.21112,528,949 - 13,710,008 (-)NCBI
RefSeq Acc Id: XM_039088673   ⟹   XP_038944601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,879 (-)NCBI
mRatBN7.21112,528,949 - 13,710,022 (-)NCBI
RefSeq Acc Id: XM_039088674   ⟹   XP_038944602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,583,750 (-)NCBI
mRatBN7.21112,528,949 - 14,096,726 (-)NCBI
RefSeq Acc Id: XM_039088675   ⟹   XP_038944603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 26,526,549 (-)NCBI
mRatBN7.21112,528,949 - 13,039,890 (-)NCBI
RefSeq Acc Id: XM_039088676   ⟹   XP_038944604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,871 (-)NCBI
mRatBN7.21112,528,949 - 13,709,983 (-)NCBI
RefSeq Acc Id: XM_039088677   ⟹   XP_038944605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,872 (-)NCBI
mRatBN7.21112,528,949 - 13,709,981 (-)NCBI
RefSeq Acc Id: XM_039088678   ⟹   XP_038944606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 26,526,549 (-)NCBI
mRatBN7.21112,528,949 - 13,038,991 (-)NCBI
RefSeq Acc Id: XM_039088679   ⟹   XP_038944607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,871 (-)NCBI
mRatBN7.21112,528,949 - 13,709,953 (-)NCBI
RefSeq Acc Id: XM_039088680   ⟹   XP_038944608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,876 (-)NCBI
mRatBN7.21112,528,949 - 13,709,988 (-)NCBI
RefSeq Acc Id: XM_039088681   ⟹   XP_038944609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,605 (-)NCBI
mRatBN7.21112,528,949 - 13,709,940 (-)NCBI
RefSeq Acc Id: XM_039088682   ⟹   XP_038944610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,596 (-)NCBI
mRatBN7.21112,528,949 - 13,709,921 (-)NCBI
RefSeq Acc Id: XM_039088683   ⟹   XP_038944611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,596 (-)NCBI
mRatBN7.21112,528,949 - 13,709,929 (-)NCBI
RefSeq Acc Id: XM_039088684   ⟹   XP_038944612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,869 (-)NCBI
mRatBN7.21112,528,949 - 13,709,943 (-)NCBI
RefSeq Acc Id: XM_039088685   ⟹   XP_038944613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,601 (-)NCBI
mRatBN7.21112,528,949 - 13,709,927 (-)NCBI
RefSeq Acc Id: XM_039088686   ⟹   XP_038944614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,601 (-)NCBI
mRatBN7.21112,528,949 - 13,709,936 (-)NCBI
RefSeq Acc Id: XM_039088687   ⟹   XP_038944615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,872 (-)NCBI
mRatBN7.21112,528,949 - 13,709,979 (-)NCBI
RefSeq Acc Id: XM_039088688   ⟹   XP_038944616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,202 (-)NCBI
mRatBN7.21112,528,949 - 13,709,921 (-)NCBI
RefSeq Acc Id: XM_039088689   ⟹   XP_038944617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,596 (-)NCBI
mRatBN7.21112,528,949 - 13,709,922 (-)NCBI
RefSeq Acc Id: XM_063270794   ⟹   XP_063126864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 26,526,549 (-)NCBI
RefSeq Acc Id: XM_063270795   ⟹   XP_063126865
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,871 (-)NCBI
RefSeq Acc Id: XM_063270796   ⟹   XP_063126866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,876 (-)NCBI
RefSeq Acc Id: XM_063270797   ⟹   XP_063126867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,608 (-)NCBI
RefSeq Acc Id: XM_063270798   ⟹   XP_063126868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,608 (-)NCBI
RefSeq Acc Id: XM_063270799   ⟹   XP_063126869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,596 (-)NCBI
RefSeq Acc Id: XM_063270800   ⟹   XP_063126870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,869 (-)NCBI
RefSeq Acc Id: XM_063270801   ⟹   XP_063126871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,604 (-)NCBI
RefSeq Acc Id: XM_063270802   ⟹   XP_063126872
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,604 (-)NCBI
RefSeq Acc Id: XM_063270803   ⟹   XP_063126873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,018,428 - 27,196,202 (-)NCBI
RefSeq Acc Id: XM_063270804   ⟹   XP_063126874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,042,299 - 26,526,549 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001401967 (Get FASTA)   NCBI Sequence Viewer  
  NP_115289 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766760 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766761 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453568 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453571 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453573 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944599 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944600 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944601 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944602 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944603 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944604 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944605 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944606 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944607 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944608 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944609 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944610 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944611 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944612 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944613 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944614 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944615 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944616 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944617 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126864 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126865 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126866 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126867 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126868 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126869 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126870 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126871 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126872 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126873 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126874 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF04558 (Get FASTA)   NCBI Sequence Viewer  
  ABG02923 (Get FASTA)   NCBI Sequence Viewer  
  ABG02924 (Get FASTA)   NCBI Sequence Viewer  
  EDM10576 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000061003
  ENSRNOP00000061003.4
  ENSRNOP00000062759.3
  ENSRNOP00000070966
  ENSRNOP00000070966.2
  ENSRNOP00000076252
  ENSRNOP00000076252.2
  ENSRNOP00000084650.1
  ENSRNOP00000089188
  ENSRNOP00000089188.1
RefSeq Acc Id: NP_115289   ⟸   NM_032106
- Peptide Label: isoform 1 precursor
- UniProtKB: A0A1W2Q6F3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766760   ⟸   XM_008768538
- Peptide Label: isoform X13
- UniProtKB: F1M950 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766761   ⟸   XM_008768539
- Peptide Label: isoform X31
- UniProtKB: A0A8I6AKD6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453568   ⟸   XM_017598079
- Peptide Label: isoform X6
- UniProtKB: F1M950 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453573   ⟸   XM_017598084
- Peptide Label: isoform X25
- UniProtKB: A0A8I6AKD6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453571   ⟸   XM_017598082
- Peptide Label: isoform X14
- UniProtKB: A0A1W2Q6F3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000061003   ⟸   ENSRNOT00000065748
RefSeq Acc Id: ENSRNOP00000076252   ⟸   ENSRNOT00000093706
RefSeq Acc Id: ENSRNOP00000062759   ⟸   ENSRNOT00000066439
RefSeq Acc Id: ENSRNOP00000070966   ⟸   ENSRNOT00000088878
RefSeq Acc Id: XP_038944602   ⟸   XM_039088674
- Peptide Label: isoform X4
- UniProtKB: F1M950 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944601   ⟸   XM_039088673
- Peptide Label: isoform X3
- UniProtKB: F1M950 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944600   ⟸   XM_039088672
- Peptide Label: isoform X2
- UniProtKB: F1M950 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944599   ⟸   XM_039088671
- Peptide Label: isoform X1
- UniProtKB: F1M950 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944608   ⟸   XM_039088680
- Peptide Label: isoform X15
- UniProtKB: A0A8I6AKD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944604   ⟸   XM_039088676
- Peptide Label: isoform X8
- UniProtKB: F1M950 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944605   ⟸   XM_039088677
- Peptide Label: isoform X9
- UniProtKB: F1M950 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944615   ⟸   XM_039088687
- Peptide Label: isoform X30
- UniProtKB: A0A8I6AKD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944607   ⟸   XM_039088679
- Peptide Label: isoform X11
- UniProtKB: A0A1W2Q6F3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944612   ⟸   XM_039088684
- Peptide Label: isoform X23
- UniProtKB: A0A8I6AKD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944609   ⟸   XM_039088681
- Peptide Label: isoform X16
- UniProtKB: A0A1W2Q6F3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944614   ⟸   XM_039088686
- Peptide Label: isoform X27
- UniProtKB: A0A8I6A1P7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944611   ⟸   XM_039088683
- Peptide Label: isoform X22
- UniProtKB: A0A0G2JZA1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944613   ⟸   XM_039088685
- Peptide Label: isoform X26
- UniProtKB: A0A8I6AKD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944617   ⟸   XM_039088689
- Peptide Label: isoform X34
- UniProtKB: A0A8I6AKD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944616   ⟸   XM_039088688
- Peptide Label: isoform X33
- UniProtKB: A0A8I6A1P7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944610   ⟸   XM_039088682
- Peptide Label: isoform X20
- UniProtKB: A0A0G2JZA1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944603   ⟸   XM_039088675
- Peptide Label: isoform X5
- UniProtKB: F1M950 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944606   ⟸   XM_039088678
- Peptide Label: isoform X10
- UniProtKB: F1M950 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000089188   ⟸   ENSRNOT00000099822
RefSeq Acc Id: NP_001401967   ⟸   NM_001415038
- Peptide Label: isoform 2 precursor
- UniProtKB: A0A1W2Q6F3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126866   ⟸   XM_063270796
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063126865   ⟸   XM_063270795
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063126870   ⟸   XM_063270800
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063126868   ⟸   XM_063270798
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063126867   ⟸   XM_063270797
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063126872   ⟸   XM_063270802
- Peptide Label: isoform X29
RefSeq Acc Id: XP_063126871   ⟸   XM_063270801
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063126869   ⟸   XM_063270799
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063126873   ⟸   XM_063270803
- Peptide Label: isoform X32
RefSeq Acc Id: XP_063126864   ⟸   XM_063270794
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063126874   ⟸   XM_063270804
- Peptide Label: isoform X35
Protein Domains
Fibronectin type-III   Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JZA1-F1-model_v2 AlphaFold A0A0G2JZA1 1-1512 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698010
Promoter ID:EPDNEW_R8527
Type:multiple initiation site
Name:Robo2_1
Description:roundabout guidance receptor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01111,585,685 - 11,585,745EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620167 AgrOrtholog
BioCyc Gene G2FUF-22244 BioCyc
Ensembl Genes ENSRNOG00000029598 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065748.4 UniProtKB/TrEMBL
  ENSRNOT00000066439.4 UniProtKB/TrEMBL
  ENSRNOT00000088878 ENTREZGENE
  ENSRNOT00000088878.2 UniProtKB/TrEMBL
  ENSRNOT00000090497.2 UniProtKB/TrEMBL
  ENSRNOT00000093706 ENTREZGENE
  ENSRNOT00000093706.2 UniProtKB/TrEMBL
  ENSRNOT00000099822.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Fibronectin_type3 UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
KEGG Report rno:84409 UniProtKB/TrEMBL
NCBI Gene 84409 ENTREZGENE
PANTHER CONTACTIN 5 UniProtKB/TrEMBL
  MYOTILIN UniProtKB/TrEMBL
  PROTEIN SIDEKICK UniProtKB/TrEMBL
  ROUNDABOUT HOMOLOG 2 UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PhenoGen Robo2 PhenoGen
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000029598 RatGTEx
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP FN_III-like UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A0A0G2JZA1 ENTREZGENE, UniProtKB/TrEMBL
  A0A1W2Q6F3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A1P7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AKD6 ENTREZGENE, UniProtKB/TrEMBL
  A6JL11_RAT UniProtKB/TrEMBL
  D3ZEC8_RAT UniProtKB/TrEMBL
  F1M950 ENTREZGENE, UniProtKB/TrEMBL
  Q9QZI3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-01 Robo2  roundabout guidance receptor 2  Robo2  roundabout, axon guidance receptor, homolog 2 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-07-12 Robo2  roundabout, axon guidance receptor, homolog 2 (Drosophila)  Robo2  roundabout homolog 2 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-01-14 Robo2  roundabout homolog 2 (Drosophila)  Robo2  roundabout, axon guidance receptor, homolog 2 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-22 Robo2  roundabout, axon guidance receptor, homolog 2 (Drosophila)  Robo2  roundabout homolog 2 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Robo2  roundabout homolog 2 (Drosophila)    roundabout 2 (Drosophila)  Name updated 1299863 APPROVED
2005-01-20 Robo2  roundabout 2 (Drosophila)    roundabout (axon guidance receptor, Drosophila) homolog 2  Name updated 1299863 APPROVED
2002-08-07 Robo2  roundabout (axon guidance receptor, Drosophila) homolog 2      Symbol and Name status set to provisional 70820 PROVISIONAL