Acvr1 (activin A receptor type 1)

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Gene: Acvr1 (activin A receptor type 1) Rattus norvegicus

Analyze

Symbol:

Acvr1

Name:

activin A receptor type 1

RGD ID:

620200

Description:

Exhibits activin receptor activity, type I. Involved in several processes, including cellular response to glucocorticoid stimulus; regulation of skeletal muscle tissue development; and transforming growth factor beta receptor signaling pathway. Localizes to activin receptor complex. Human ortholog(s) of this gene implicated in fibrodysplasia ossificans progressiva. Orthologous to human ACVR1 (activin A receptor type 1); PARTICIPATES IN activin signaling pathway; cytokine mediated signaling pathway; transforming growth factor-beta superfamily mediated signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

activin A receptor, type 1; activin A receptor, type I; activin receptor type I; activin receptor type-1; activin type I receptor; ACTR-I; ALK2-B; serine/threonine-protein kinase receptor R1; SKR1; TGF-B superfamily receptor type I; TSR-I

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ACVR1 (activin A receptor type 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Acvr1 (activin A receptor, type 1)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Acvr1 (activin A receptor type 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ACVR1 (activin A receptor type 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ACVR1 (activin A receptor type 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Acvr1 (activin A receptor type 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ACVR1 (activin A receptor type 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ACVR1 (activin A receptor type 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Acvr1 (activin A receptor type 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Acvr1 (activin A receptor, type 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	ACVR1 (activin A receptor type 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	acvr1l (activin A receptor, type 1 like)	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	sax	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	daf-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector)
Caenorhabditis elegans (roundworm):	sma-6	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	42,978,558 - 43,097,892 (-)	NCBI
Rnor_6.0 Ensembl	3	44,432,471 - 44,522,930 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	44,432,476 - 44,539,680 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	49,551,411 - 49,641,517 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	40,191,727 - 40,260,488 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	40,088,098 - 40,156,860 (-)	NCBI
Celera	3	41,046,965 - 41,113,654 (-)	NCBI		Celera
Cytogenetic Map	3	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Acute Lung Injury (ISO)

autism spectrum disorder (ISO)

Breast Neoplasms (ISO)

Diabetic Nephropathies (IEP)

diffuse midline glioma, H3 K27M-mutant (ISO)

fibrodysplasia ossificans progressiva (ISO)

gastric adenocarcinoma (ISO)

genetic disease (ISO)

high grade glioma (ISO)

malignant astrocytoma (ISO)

myositis ossificans (ISO)

pancreatic cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-diaminodiphenylmethane (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

aristolochic acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

calciol (ISO)

carbamazepine (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

dextran sulfate (ISO)

dichlorine (EXP)

diclofenac (ISO)

ethanol (ISO)

folic acid (ISO)

furan (EXP)

gamma-hexachlorocyclohexane (EXP)

genistein (EXP)

geraniol (ISO)

glyphosate (ISO)

lead(0) (ISO)

lead(2+) (ISO)

leflunomide (ISO)

nickel sulfate (ISO)

oxaliplatin (EXP)

ozone (EXP)

paraquat (EXP)

phenobarbital (ISO)

pirinixic acid (ISO)

progesterone (ISO)

propiconazole (ISO)

rac-lactic acid (ISO)

sodium arsenite (ISO)

Soman (EXP)

thapsigargin (ISO)

titanium dioxide (ISO)

toluene (EXP)

topotecan (EXP)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activin receptor signaling pathway (IEA,ISO)

acute inflammatory response (IEA,ISO)

angiogenesis (IBA)

atrial septum primum morphogenesis (IEA,ISO)

atrioventricular valve morphogenesis (ISO)

BMP signaling pathway (IBA,ISO)

BMP signaling pathway involved in heart development (IEA,ISO)

branching involved in blood vessel morphogenesis (IEA,ISO)

cardiac muscle cell fate commitment (IEA,ISO)

cellular response to BMP stimulus (ISO)

cellular response to glucocorticoid stimulus (IEP)

cellular response to growth factor stimulus (IBA)

determination of left/right symmetry (IEA,ISO)

dorsal/ventral pattern formation (IBA)

embryonic heart tube morphogenesis (IEA,ISO)

endocardial cushion cell fate commitment (IEA,ISO)

endocardial cushion fusion (IEA,ISO)

endocardial cushion morphogenesis (ISO)

G1/S transition of mitotic cell cycle (IEA,ISO)

gastrulation (ISO)

gastrulation with mouth forming second (IEA,ISO)

germ cell development (IEA,ISO)

heart development (IBA,ISO)

in utero embryonic development (IEA,ISO)

mesoderm development (ISO)

mesoderm formation (IEA,ISO)

mitral valve morphogenesis (IEA,ISO)

negative regulation of activin receptor signaling pathway (IEA,ISO)

negative regulation of extrinsic apoptotic signaling pathway (IEA,ISO)

negative regulation of signal transduction (ISO)

neural crest cell migration (IEA,ISO)

outflow tract septum morphogenesis (ISO)

pathway-restricted SMAD protein phosphorylation (IEA,ISO)

peptidyl-threonine phosphorylation (IEA,ISO)

pharyngeal system development (IEA,ISO)

positive regulation of bone mineralization (IEA,ISO)

positive regulation of cell migration (IEA,ISO)

positive regulation of determination of dorsal identity (IEA,ISO)

positive regulation of epithelial to mesenchymal transition involved in endocardial cushion formation (IEA,ISO)

positive regulation of osteoblast differentiation (IEA,ISO)

positive regulation of pathway-restricted SMAD protein phosphorylation (IEA,ISO)

positive regulation of peptidyl-tyrosine phosphorylation (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

positive regulation of transcription, DNA-templated (ISO)

protein phosphorylation (IBA,ISO,TAS)

regulation of ossification (ISO)

regulation of skeletal muscle tissue development (IEP)

smooth muscle cell differentiation (IEA,ISO)

transforming growth factor beta receptor signaling pathway (IBA,IEA,IMP,ISO)

ventricular septum morphogenesis (IEA,ISO)

Cellular Component

activin receptor complex (IDA,IEA,ISO)

apical part of cell (IEA,ISO)

BMP receptor complex (IBA)

integral component of plasma membrane (ISO)

plasma membrane (IBA)

receptor complex (IBA)

Molecular Function

activin binding (IEA,ISO)

activin receptor activity, type I (IDA,IEA,ISO)

ATP binding (IEA,ISO)

cadherin binding (IEA,ISO)

growth factor binding (ISO)

metal ion binding (IEA)

protein binding (ISO)

protein homodimerization activity (IEA,ISO)

protein kinase activity (ISO)

protein serine/threonine kinase activity (IBA,ISO)

protein tyrosine kinase binding (IEA,ISO)

SMAD binding (IBA,IEA,ISO)

transforming growth factor beta binding (IEA,ISO)

transforming growth factor beta receptor activity, type I (IBA,IEA,ISO)

transmembrane receptor protein serine/threonine kinase activity (TAS)

Molecular Pathway Annotations Click to see Annotation Detail View

activin signaling pathway (ISO,TAS)

cytokine mediated signaling pathway (IEA)

transforming growth factor-beta superfamily mediated signaling pathway (IEA)

References

References - curated


1.	de Caestecker M Cytokine Growth Factor Rev. 2004 Feb;15(1):1-11.
2.	Drummond AE, etal., Mol Cell Endocrinol. 2003 Apr 28;202(1-2):53-7.
3.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	GOA data from the GO Consortium
5.	Kano Y, etal., Endocrinology. 2005 Dec;146(12):5332-40. Epub 2005 Sep 8.
6.	Kleeff J, etal., Int J Cancer. 1998 Sep 11;77(6):860-8.
7.	MGD data from the GO Consortium
8.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
9.	OMIM Disease Annotation Pipeline
10.	Pipeline to import KEGG annotations from KEGG into RGD
11.	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
12.	RGD automated data pipeline
13.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14.	RGD automated import pipeline for gene-chemical interactions
15.	Tsuchida K, etal., Proc Natl Acad Sci U S A 1993 Dec 1;90(23):11242-6.
16.	Visser JA, etal., Mol Endocrinol. 2001 Jun;15(6):936-45.
17.	Wang EY, etal., J Endocrinol 2003 Jul;178(1):137-48.
18.	Wang SN, etal., J Am Soc Nephrol. 2001 Nov;12(11):2392-9.
19.	Zhang D, etal., J Bone Miner Res. 2003 Sep;18(9):1593-604.

Additional References at PubMed

PMID:1646080	PMID:7577669	PMID:8242742	PMID:8388127	PMID:8395914	PMID:9884026	PMID:10226013	PMID:10479450	PMID:10704880	PMID:11290335	PMID:12054694	PMID:12065756
PMID:12151307	PMID:12477932	PMID:14729481	PMID:14993131	PMID:15037318	PMID:15226263	PMID:15289457	PMID:15531373	PMID:16140292	PMID:16420278	PMID:16642017	PMID:17078885
PMID:17117439	PMID:18326817	PMID:18436533	PMID:19506109	PMID:19736306	PMID:22871113	PMID:26598555	PMID:26873969

Genomics

Comparative Map Data

Acvr1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	42,978,558 - 43,097,892 (-)	NCBI
Rnor_6.0 Ensembl	3	44,432,471 - 44,522,930 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	44,432,476 - 44,539,680 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	49,551,411 - 49,641,517 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	40,191,727 - 40,260,488 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	40,088,098 - 40,156,860 (-)	NCBI
Celera	3	41,046,965 - 41,113,654 (-)	NCBI		Celera
Cytogenetic Map	3	q21	NCBI

ACVR1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	157,736,251 - 157,876,330 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	157,736,446 - 157,876,330 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	158,592,958 - 158,732,842 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	158,301,207 - 158,403,036 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	2	158,418,468 - 158,520,298	NCBI
Celera	2	152,206,070 - 152,344,336 (-)	NCBI
Cytogenetic Map	2	q24.1	NCBI
HuRef	2	150,478,249 - 150,616,526 (-)	NCBI		HuRef
CHM1_1	2	158,598,894 - 158,738,243 (-)	NCBI		CHM1_1

Acvr1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	58,336,450 - 58,456,840 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	2	58,278,656 - 58,457,169 (-)	Ensembl
GRCm38	2	58,446,438 - 58,566,828 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	58,388,644 - 58,567,157 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	58,298,849 - 58,419,239 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	58,261,824 - 58,331,545 (-)	NCBI			mm8
Celera	2	60,202,316 - 60,294,260 (-)	NCBI		Celera
Cytogenetic Map	2	C1.1	NCBI

Acvr1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955449	15,640,230 - 15,708,694 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955449	15,587,958 - 15,706,432 (+)	NCBI	ChiLan1.0	ChiLan1.0

ACVR1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2B	162,234,823 - 162,372,533 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	162,234,823 - 162,297,805 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2B	44,994,175 - 45,133,490 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

ACVR1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	36	3,743,257 - 3,818,659 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	36	3,744,163 - 3,818,652 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	36	3,880,162 - 4,006,562 (-)	NCBI
ROS_Cfam_1.0	36	3,865,484 - 3,991,973 (-)	NCBI
UMICH_Zoey_3.1	36	3,867,397 - 3,993,826 (-)	NCBI
UNSW_CanFamBas_1.0	36	3,927,214 - 4,053,637 (-)	NCBI
UU_Cfam_GSD_1.0	36	3,965,356 - 4,091,837 (-)	NCBI

Acvr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	120,806,153 - 120,874,529 (-)	NCBI
SpeTri2.0	NW_004936469	20,743,195 - 20,811,567 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ACVR1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	64,748,761 - 64,892,153 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	64,749,478 - 64,891,653 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	71,681,467 - 71,823,490 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ACVR1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	43,139,396 - 43,281,024 (-)	NCBI
ChlSab1.1 Ensembl	10	43,139,528 - 43,281,177 (-)	Ensembl
Vero_WHO_p1.0	NW_023666040	156,293,920 - 156,435,319 (+)	NCBI

Acvr1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624732	7,929,997 - 8,004,235 (+)	NCBI

Position Markers

BF401349

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	43,037,901 - 43,038,048 (+)	MAPPER
Rnor_6.0	3	44,491,716 - 44,491,862	NCBI	Rnor6.0
Rnor_5.0	3	49,610,697 - 49,610,843	UniSTS	Rnor5.0
RGSC_v3.4	3	40,250,254 - 40,250,400	UniSTS	RGSC3.4
Celera	3	41,104,894 - 41,105,040	UniSTS
RH 3.4 Map	16	742.8	UniSTS
Cytogenetic Map	3	q21	UniSTS

RH138112

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	42,982,660 - 42,982,786 (+)	MAPPER
Rnor_6.0	3	44,436,580 - 44,436,705	NCBI	Rnor6.0
Rnor_5.0	3	49,555,515 - 49,555,640	UniSTS	Rnor5.0
RGSC_v3.4	3	40,194,784 - 40,194,909	UniSTS	RGSC3.4
Celera	3	41,050,022 - 41,050,147	UniSTS
RH 3.4 Map	3	554.0	UniSTS
Cytogenetic Map	3	q21	UniSTS

Acvr1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	42,979,809 - 42,980,549 (+)	MAPPER
Rnor_6.0	3	44,433,728 - 44,434,467	NCBI	Rnor6.0
Rnor_5.0	3	49,552,663 - 49,553,402	UniSTS	Rnor5.0
RGSC_v3.4	3	40,191,932 - 40,192,671	UniSTS	RGSC3.4
Celera	3	41,047,170 - 41,047,909	UniSTS
Cytogenetic Map	3	q21	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	95176874	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	2631421	48562146	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	3	6000748	51687917	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	3	6000748	51687917	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10094081	93415837	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	10119318	79772001	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
731172	Bp151	Blood pressure QTL 151		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14090411	48562146	Rat
12879849	Bw180	Body weight QTL 180		0.037	body mass (VT:0001259)	body weight (CMO:0000012)	3	14090411	48562146	Rat
12879850	Cm91	Cardiac mass QTL 91		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	14090411	48562146	Rat
12879851	Cm92	Cardiac mass QTL 92		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	14090411	48562146	Rat
12879852	Cm93	Cardiac mass QTL 93		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	14090411	48562146	Rat
12879853	Am5	Aortic mass QTL 5		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	14090411	48562146	Rat
12879854	Kidm63	Kidney mass QTL 63		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	14090411	48562146	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	18023664	63023664	Rat
10450794	Scl69	Serum cholesterol level QTL 69	6.3	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	21223803	66223803	Rat
10450804	Scl70	Serum cholesterol level QTL 70	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	21223803	66223803	Rat
631685	Bp118	Blood pressure QTL 118	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	24655225	69655225	Rat
631832	Sach1	Saccharin preference QTL 1	2.7	0.02	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	3	28136728	45772990	Rat
2313049	Bss72	Bone structure and strength QTL 72	2.6	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	3	28136728	51687917	Rat
2313076	Bss74	Bone structure and strength QTL 74	2	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	3	28136728	51687917	Rat
2313079	Bss73	Bone structure and strength QTL 73	1.5		tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	3	28136728	51687917	Rat
2313093	Bmd77	Bone mineral density QTL 77	2.2	0.0001	tibia mineral mass (VT:1000283)	cortical volumetric bone mineral density (CMO:0001730)	3	28136728	51687917	Rat
2313101	Bmd76	Bone mineral density QTL 76	3.6	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	3	28136728	51687917	Rat
2302055	Pia30	Pristane induced arthritis QTL 30	3.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	3	29321714	74321714	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	29682732	74682732	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	29682732	74682732	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	29682732	74682732	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	29682732	74682732	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	29682732	74682732	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	29908255	74908255	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	29908255	74908255	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	30114912	123700444	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	30846101	172879276	Rat
2301400	Cm68	Cardiac mass QTL 68		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	31103589	72989078	Rat
11565451	Bw177	Body weight QTL 177		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	3	31103589	72989078	Rat
11565452	Kidm57	Kidney mass QTL 57		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	31103589	72989078	Rat
12879866	Cm94	Cardiac mass QTL 94		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	31103589	72989078	Rat
12879867	Cm95	Cardiac mass QTL 95		0.047	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	31103589	72989078	Rat
12879868	Am6	Aortic mass QTL 6		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	31103589	72989078	Rat
61356	Bp37	Blood pressure QTL 37	3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	32130997	77130997	Rat
631647	Bp122	Blood pressure QTL 122	6.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	32130997	77130997	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	33477354	62922975	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	33477354	81136227	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	33477354	108914061	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	34394121	103141944	Rat
10450813	Scl74	Serum cholesterol level QTL 74	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	39248391	52182792	Rat
10450852	Stl33	Serum triglyceride level QTL 33	3.4	0.05	blood LDL triglyceride amount (VT:0010699)	blood lipoprotein triglyceride level (CMO:0002685)	3	39248391	52182792	Rat
10450816	Scl75	Serum cholesterol level QTL 75	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	39248391	52182792	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	39248391	140271184	Rat
4889975	Bmd81	Bone mineral density QTL 81	4.3		tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	3	39773247	51687917	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	40422921	85422921	Rat
634317	Bw117	Body weight QTL 117	3.58		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	40523593	54745780	Rat
2302276	Bw82	Body weight QTL 82	4.32		body mass (VT:0001259)	body weight (CMO:0000012)	3	40523593	64880586	Rat
1331777	Bw24	Body weight QTL 24	3.503		body mass (VT:0001259)	body weight (CMO:0000012)	3	40523593	92654473	Rat
1331795	Rf30	Renal function QTL 30	3.708		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	3	40523593	92654473	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	43295930	108914061	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	43295930	163640485	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	43295930	163640485	Rat

miRNA Target Status

Confirmed Target Of

miRNA Gene	Mature miRNA	Method Name	Result Type	Data Type	Support Type	PMID
Mir130a	rno-miR-130a-3p	Mirtarbase	external_info	Microarray	Functional MTI (Weak)	18258830

Predicted Target Of

	Summary Value
Count of predictions:	701
Count of miRNA genes:	261
Interacting mature miRNAs:	322
Transcripts:	ENSRNOT00000006963
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		33	20	19		19	1	2	66	31	33	11	1
Low	3	10	37	22	19	22	7	9	8	4	8		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_024486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY693390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC167754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FB745997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L19341	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000006963 ⟹ ENSRNOP00000006963

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	44,432,479 - 44,522,930 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000087071 ⟹ ENSRNOP00000072326

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	44,432,471 - 44,501,115 (-)	Ensembl

RefSeq Acc Id:

NM_024486 ⟹ NP_077812

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	42,979,605 - 43,047,200 (-)	NCBI
Rnor_6.0	3	44,433,523 - 44,500,986 (-)	NCBI
Rnor_5.0	3	49,551,411 - 49,641,517 (-)	NCBI
RGSC_v3.4	3	40,191,727 - 40,260,488 (-)	RGD
Celera	3	41,046,965 - 41,113,654 (-)	RGD

Sequence:

show sequence

TGTGCTGGGTGTGCCCCAGAGCTGGCTTTGACTGTACGCTGTCAGGCTCTCCCTGGACCTCACG
GAACAGCATTGCCAGCCACACGGCTTCCAACAAATCACCTCTTTTCATGCTGTTTGGCACAGAT
CGAATCTACAGGTTATACAATGGTCGATGGAGCAATGATCCTTTCTGTGCTAATGATGATGGCT
CTCCCTTCCCCGAGTATGGAAGATGAGGAGCCCAAGGTCAACCCGAAGCTTTACATGTGTGTGT
GTGAGGGCCTCTCCTGCGGGAACGAGGACCACTGTGAGGGCCAGCAGTGTTTTTCCTCCCTGAG
CGTCAATGATGGCTTCCGCGTCTACCAGAAGGGCTGCTTTCAGGTCTATGAGCAGGGGAAGATG
ACGTGTAAGACCCCGCCGTCGCCTGGCCAGGCTGTGGAGTGCTGCCAAGGGGACTGGTGCAACA
GGAACGTCACGGCCCGGCTGCCCACTAAAGGGAAATCCTTCCCTGGATCGCAGAACTTCCACCT
GGAAGTTGGCCTTATCATCCTCTCCGTGGTGTTTGCGGTATGCCTTTTCGCTTGCATCCTTGGC
GTTGCTCTCAGGAAGTTTAAAAGGCGCAATCAAGAGCGCCTGAACCCCAGAGACGTGGAGTACG
GTACTATCGAAGGGCTCATCACCACCAACGTCGGAGATAGCACTCTAGCGGAATTACTAGATCA
CTCATGTACATCAGGAAGTGGCTCCGGTCTTCCTTTTCTGGTACAGAGAACTGTGGCTCGACAG
ATAACCCTGTTGGAGTGTGTCGGGAAGGGCCGGTATGGAGAAGTGTGGAGGGGCAGCTGGCAAG
GCGAAAATGTTGCTGTGAAGATCTTCTCCTCCCGTGATGAGAAGTCGTGGTTCAGGGAGACAGA
ATTGTACAACACGGTTATGCTGAGGCATGAGAATATCTTAGGTTTCATTGCTTCAGACATGACC
TCTAGACACTCCAGTACCCAGCTGTGGCTCATTACACATTACCACGAAATGGGATCGTTGTATG
ACTACCTTCAGCTCACCACTCTGGACACGGTTAGCTGCCTTCGGATCGTGTTGTCCATAGCCAG
CGGCCTTGCACACTTGCACATAGAGATATTTGGGACCCAGGGGAAGTCTGCCATCGCCCACCGA
GATCTAAAGAGCAAAAACATCCTCGTGAAGAAGAACGGACAGTGCTGCATAGCAGATTTGGGCC
TGGCAGTCATGCATTCCCAGAGCACGAATCAGCTTGATGTGGGAAACAACCCCCGTGTGGGGAC
CAAGCGCTACATGGCCCCTGAAGTGCTTGATGAAACCATCCAAGTGGATTGCTTTGATTCTTAT
AAGAGGGTCGATATTTGGGCCTTTGGCCTCGTTCTGTGGGAAGTGGCCAGGAGGATGGTGAGCA
ATGGTATAGTGGAAGATTACAAGCCACCATTCTATGATGTTGTTCCCAATGACCCAAGTTTTGA
AGATATGAGGAAAGTTGTCTGTGTGGATCAACAGAGGCCAAACATACCTAACAGATGGTTCTCA
GACCCGACATTAACTTCTCTGGCGAAGCTGATGAAAGAATGCTGGTACCAGAACCCATCCGCCA
GACTCACAGCTCTACGTATCAAAAAGACTTTGACCAAAATTGATAACTCCCTAGACAAATTAAA
AACTGACTGTTGACATTGTCACCGGTGTCAAGAAGGAGAGTCAATGCTGTCATTGTCCAGCTGG
GACCTAATGCTGGCCTGACTGGTTGTCAGAACAGAATCCATCTGTCCCCCTC

hide sequence

RefSeq Acc Id:

XM_006234214 ⟹ XP_006234276

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	44,432,476 - 44,539,680 (-)	NCBI
Rnor_5.0	3	49,551,411 - 49,641,517 (-)	NCBI

Sequence:

show sequence

TTCTTTCTTTCTTTCTTTCTTAAATATTGTGAGTAAGTAAGCATTTAGTGACTGAGAAACTCAG
ATAGTCAGCTCTTTATTATTGATCACAAATAGAGACAATGGATTTTTATACTTAGGGAAAATTT
TTTATTTTTAATAGCTTTAAAAAAAAGCAATTGGGCTGGTGACAGACAGCAACTTTTATTCGTG
GTTATGGAGCAGACGAGAGGGGACTGCTCTTGCTCACTTTGTAAGACGAACAAGATAAAATTAG
GTTACTTCTGGAGTACTTAGTCAGAGTTCTTCTCCTTGGTTGCGCTGGGGAGAGAGCCCACGGC
CTGTATGAGCCAGGAGGAACTCTACAGCTGAAGTACATCTCTAGGAATTCATCACTGGTTTTAA
TAACACCACTGTACTTCTTTGCATTTCCCAAACTAGATATATCTAAAAGTTAAACACGGCATAG
TATAAAATTCATGTTTGTTCTCCGTACGGCATTTTTCCTTTAGAATTTATCCTCCTCAGCCAAA
GACTGAATTTGACTTTTTCATTTGATCCACTTGGAATCTCTGAATCGCAAATACAAATTTTTTT
CTAGAGCGTTTTTGAGTCCTCGATTGACTTTTATTTTGCATTTACTAAACCTCTTCCCCTATGC
AAATTTAGCTATGGAGTAGTTAAAACAAAACAAAAACAAAAGTAAAGAGCAACTTAGTCTCTTG
TTGAGAGATTGAGCTTCATTCATATTCATAAAGTGGAATTGTATGTGGTCACCAAAGCTGTGAC
TTCAGGAGAATCTTCATGGATATAGCATACATTATTTTTGGGAACCAGGGTCCCCATATGCAGT
GATCCTCCTGCCTCTGTATCCTGTGCTGGGATTATAGGTGTTTGCCATCATGGACAGCTCTAGA
TCATAGTTTGAGTTTTCCTTAGTAGTTTTTAGATTTTCGGTCATGAAGTTGTGCTATAAGGGGG
AAGAGAGTTACCTGGGAATACACTGCACAGAAGCACACCTTCTCAGTGCTTGTGGACATGAGGA
TTGTCTTTAAACACAGCGAGTGGAGTAAACACCAGAACTATTTTACCCCCATAAGGTAGAATTA
GGGGTGGCCACCTTCCCAGTAATGATGTGCCACAGTACTGTAGCCTTTGCTCTTGCCACCTCTG
TAGGGTGACAGCTTTTATACCGACTTTAGGGTTAAATTATGACCCAGGTGTCACACTTTTGAGA
GGCTGGTTTTCATTTCGCAGGTTGCAAGTTTAGTAGATCTGGTGCAAGTGTCTAATTATAATTA
TTGACACTTTTCAAAGGCTGCATTAAGTGGGATATGCCACCCGTGATTCTGACAGCCGTGACTG
CGTGGAGCCTGCTCCAGAACTCTCCACAGAGGAGCAAAGGAGCTGCCCTCTGTGTCTCCCCGCC
CTTCAGCGAGAGTCTGGAAAGAGAACCGAGGTGCTACTGCAGTGGATGAGTAGAGAAGAGTCTG
CATCCAGTGCTGGTGAGCTTGTCTGGCTATAGGGAGCCTGCTGGGGGAAACTTACAGCTTCAGA
AGACTCCTGGAGAGCCTCTCCCTCCACACTCTCCCTTTGAGCAGTCAGTGCCTCTCTGCTGGAG
AACCTGTGCTGGGTGTGCCCCAGAGCTGGCTTTGACTGTAGCCTGTCAGGCTCTCCCTGGACCT
CACGGAACAGCATTGCCAGCCACACGGCTTCCAACAAATCACCTCTTTTCATGCTGTTTGGCAC
AGATCGAATCTACAGGTTATACAATGGTCGATGGAGCAATGATCCTTTCTGTGCTAATGATGAT
GGCTCTCCCTTCCCCGAGTATGGAAGATGAGGAGCCCAAGGTCAACCCGAAGCTTTACATGTGT
GTGTGTGAGGGCCTCTCCTGCGGGAACGAGGACCACTGTGAGGGCCAGCAGTGTTTTTCCTCCC
TGAGCGTCAATGATGGCTTCCGCGTCTACCAGAAGGGCTGCTTTCAGGTCTATGAGCAGGGGAA
GATGACGTGTAAGACCCCGCCGTCGCCTGGCCAGGCTGTGGAGTGCTGCCAAGGGGACTGGTGC
AACAGGAACGTCACGGCCCGGCTGCCCACTAAAGGGAAATCCTTCCCTGGATCGCAGAACTTCC
ACCTGGAAGTTGGCCTTATCATCCTCTCCGTGGTGTTTGCGGTATGCCTTTTCGCTTGCATCCT
TGGCGTTGCTCTCAGGAAGTTTAAAAGGCGCAATCAAGAGCGCCTGAACCCCAGAGACGTGGAG
TATGGTACTATCGAAGGGCTCATCACCACCAACGTCGGAGATAGCACTCTAGCGGAATTACTAG
ATCACTCGTGTACATCAGGAAGTGGCTCCGGTCTTCCTTTTCTGGTACAGAGAACTGTGGCTCG
ACAGATAACCCTGTTGGAGTGTGTCGGGAAGGGCCGGTATGGAGAAGTGTGGAGGGGCAGCTGG
CAAGGCGAAAATGTTGCTGTGAAGATCTTCTCCTCCCGTGATGAGAAGTCGTGGTTCAGGGAGA
CAGAATTGTACAACACGGTGATGCTGAGGCATGAGAATATCTTAGGTTTCATTGCTTCAGACAT
GACCTCTAGACACTCCAGTACCCAGCTGTGGCTCATTACACATTACCACGAAATGGGATCGTTG
TATGACTACCTTCAGCTCACCACTCTGGACACGGTTAGCTGCCTTCGGATCGTGTTGTCCATAG
CCAGCGGCCTTGCACACTTGCACATAGAGATATTTGGGACCCAGGGGAAGTCTGCCATCGCCCA
CCGAGATCTAAAGAGCAAAAACATCCTCGTGAAGAAGAACGGACAGTGCTGCATAGCAGATTTG
GGCCTGGCAGTCATGCATTCCCAGAGCACGAATCAGCTTGATGTGGGAAACAACCCCCGTGTGG
GGACCAAGCGCTACATGGCCCCTGAAGTGCTTGATGAAACCATCCAAGTGGATTGCTTTGATTC
TTATAAGAGGGTCGATATTTGGGCCTTTGGCCTCGTTCTGTGGGAAGTGGCCAGGAGGATGGTG
AGCAATGGTATAGTGGAAGATTACAAGCCACCATTCTATGATGTTGTTCCCAATGACCCAAGTT
TTGAAGATATGAGGAAAGTTGTCTGTGTGGATCAACAGAGGCCAAACATACCTAACAGATGGTT
CTCAGACCCGACATTAACTTCTCTGGCGAAGCTGATGAAAGAATGCTGGTACCAGAACCCATCC
GCCAGACTCACAGCTCTACGTATCAAAAAGACTTTGACCAAAATTGATAACTCCCTAGACAAAT
TAAAAACTGACTGTTGACATTGTCACCGGTGTCAAGAAGGAGAGTCAATGCTGTCATTGTCCAG
CTGGGACCTAATGCTGGCCTGACTGGTTGTCAGAACAGAATCCATCTGTCCCCCTCTCCCCCCA
ACTCCCGAAGTGGCTGCTTTGACAAAAGCAGATGTCTCTTCCCAGCCATGTTCCGGGGGAGACA
CCAAAACCACCCTAACCTCGCTCAGAAACTGTGACTCGAGCACTTGATGAACTGTTCACACCAC
AAAGACTAACGGTGGGCAGGTATGTTTGCAAGGGGGAGGGAAGTGGAGGAGCACAGAGAGATCC
TGCAGGAGATCTGGGCATTAGGACAGTGGCTCTTTGCGTATCTTCCACGGGTCTCCTAGACTCG
CCCCACGGGAAACTCAAGGAGGCGGTGAATTCGTAATCAGCAATATTGGCTGCGCCTACTCTTC
TCTGTTGCACTAGGAATTCTCTGCATTCCTTACTTGCACTGTCGTCCTTAATCTTAAAGACCCG
ACTTGCCAAAACATTGGCTGCCTACTTCACTGGCCTGTCTCTGGACAATAGGAATTCAATCTGG
CGAAACAAAAATGTAATGTTGGACTTTGCTGCATTTTACACACGTGCCGATGTTTACAACGATG
CAAACATTAGGAATTGTTTAGACACAACTTTGCAAATTATTTATTACTGGTGCACTTAGCAGTT
TTTGTTTTTTTGTTTTTTTTTTGTTTTGTTTTGTTTTTATATATAAAACTGCCTCGTGCGTATG
TTAAAGCTTATTTTTATGTGGTCTTATGATTTTATTACCGAAATGTTTTTAACACCCGATTCTG
AAATGGATGTTTTCTTTTATTATCAGTTAAATTCACATTTTAAATGCTTCACTTTTTTTTTTAT
GTGTGTAGACTGTAACTTTCTTTTCAGTTAGTATACAGAACGTATTTAGCCATTACCCATGCAA
CACCACCCAATATATTACTGATTTAGAAGCAAAGATTTCAGTAGAATTTTAGTCCCAAACGCTG
TGGGGGGGAAATGCATCTTCTTCGGAACTATCCATTACGTGCATTTAAACTCTGCCAGAAAAAA
AAATAACTATTTTGTTTTAATCTACTTTTTGTATTTAGTAGTTATTTGTATAAATTAAATAAAC
TGTTTTCAAGTCAAA

hide sequence

RefSeq Acc Id:

XM_008761864 ⟹ XP_008760086

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	44,432,476 - 44,529,465 (-)	NCBI

Sequence:

show sequence

GTGTGTGTGTGTGATATCTATCATTTTAGGGAAGATTTGAGTTCTAAACATTACCTTTGATGCA
GAAACTTAACAGGCATGTTTCCTCAACTTTCAGTCTATGCTACATCACAAATGTTTTTTTAAGA
GACTTTGGTATGTGCTTGCTAAGGTGATGTGTATAGTCTCTTACCTGCTAGTGTGGGGATCTTA
CTGGAGAAGGAAACTGTCGATCTTGTATGGTTTTATTGTTACTTTAAAGCTCCTTGGGAACCAC
TTTCTAAGTGTTTAAGATCTGCTCCGAAATCTTGCTGGGGACTTTAGATTGCTGTCTAGAGACT
CTGGTGGGATTCTCAGTTTAGTTTTTCTGAAGCCTCTAGTGTTTGATCACTTTGGATATTCCCT
TGTTGACATATATTTCAAGCTTTGCAATTCTCTGAAATGGCCTTCCTCTTCTTTTTGAATTTCC
ATTTTCCAAGAGCCTCTGAACGTTCGTTGCTCGATAAGGTAGCTGCTAACCCCAGGCTATGTAG
AGATGCCACTGTCTCTAGTGAACCCCACTGACTTCAAGTTGAAAGCCAATGCAGGAAACGCTGA
CCCTTGGAACAGAAGGTTAAGGTCAACTATTCTGGGAATTGAGAGCAGACCATGAAGGAGCGAA
ATGGCCACAATTCAAGCAGTTAGCCTTACGCGTCATTCTTGCTGGCTTATACGTGTATATTTGT
GGCCTGTGTCTTCTGCTAACAATGAGTCATTTTTCAAAATGAAGTAAATGTGAATAAATTTATT
TGTAGAATACTTTGTGTAATTGGGAGTGGCGTGCCAAGAATTACTGAGTTTTGAAAGAAGAAGA
AGAAAAAAAAAACCCTTGAAGTTGGCAGCTTTGACTTATGACTCTAGTTCTGCCAACCTTGATC
AGTTATCTGAAGGCTGGGCAATGTTTGTAGGCTGATTCTGGTGCTCTAGTGTTTTGTATAAACT
CTATCTGTATGGATGCTACTAAGTTTGAAAAGATAACCAAAGAGTGAAAGGTACTAGAAATATT
TTTAAGTAATTTATGATTTCCATGAGTTCCAATATTTTTTTCCAATTTCTAAATTCCACACAGT
TGACTGTGTGGGATTTAGAGACAGTGTTCTTAGCACATCTTTCTTGAAAGAACTGTTTGTTTCT
CACCTATAAAACAATAGGGATAGAAAACGAGATATAAGCTTTTTAGAGAACGTTATAGTAATTT
GGCTTCTGAATATAAGGGGATGTGTGGTTAGTGGATTGTGTCAAAGGACAAGACATTTTGCTAA
AGCGTTGATCTACCATGGGTGGGAAGTTTAGTTGCATGAACTCTGATCAGGGTAAGAGTGAATG
ACTGCTCAAGCTAGGCTTGAACTGTGAGAAGAGACTCTGCAGAGAGCCTGGACACTCTTAGGTG
GTAGAGCAGTGCAGACTGCTGCAGGAATGGTATCCAATTATTCTAGATGATCTTTTCTCTTCCT
GTGATTCATTTGTAAATTGGTTATGGTTAGGTTATTGGTTTCCCAGTTTCTGAAATGCTTCTTT
TATACAGCTGTTCATATGATCTTTTCAATCCACTCATACTAATCCGTGAGGTAGACACTTTCGT
ATGTGGAAGAAACTTTTAAACTGCTCACATTGACTTTTAAAATACCTGATGATTTCCTTCCACA
CTTTTGTAGCACGTGTTCTTATAATGCCGACATGTCTCAACTAGACTGTTACCGTTTCAGTTAA
CTCCTCTTTGTATGGTCCCTGAACCTAACTGCTGCATTTGATGATCCTCACTGTTAGTGAGTCA
GGGCTTGTGTTGTGCACAGCAAGGACATCTTTTCTCTGTGTCAAGTCTAGGACCACAGCTGGGA
GCATTTGGTAAACTGGTCCCTCCCACAGTTCATTCTTTCCATTCCCTCATGTCTGGCTGCCGAT
GCTGTCAGTTGAGAGCTCTTGGGACTGGCAACTGAAATACCTACCTACGGTGCCTCTACCCAGG
CTCTTTGAGCTTCCCCAGAACATGGCAGCCAAGGCCCCAGAGCAGGTATCTCAAGAGGCAGAAG
ATGGGAGCTACAAATTTCTTAAGACCTGATCCTAGAAACTGTTACTGTTACTTCCAACACACTG
TATCCATTGAGCTGTCATGGATACAATGTCTGGAGGAGTGGGTGTAATCCCGCCTTAGTGGGAG
GCAAGCCATGCGAGCAGATGGTTTCAGCTAATCTTTGCGCACCTCTCAGTACCTACCTCAGTTT
TCTCCCTGCACTCATGGTCTCCTCCCTAGTCCAACGCCATGTCTTTCTCCACGAAGCACCTGTA
CAAAATCCGTTTATGTATCCTAGGCCACTACTGTCTAGTTCTTTTGTAGTTATTTTTTAGTAGA
CTGCAGAGTTCTTTGAATGTAAGAACCAGGTCTGGTTTACCTTTGACTACTTTGTAGCAGATAA
ATTCCTTGAACAGAGCATTCAATGTCAAAGCAGGTCTCAAATTTGAGAGCCAGATGGGGTGGGA
GTTCGCAGTGGTTGAATAGGGAATTGTAATGAGCAAATCAAACACTTCCCTTGGAATAGAGATT
ATTTCTGATGTTGAATTTTAAAGCTTAAAAAAAAAACTTCTCTTTGTTATATAGCAAAAGTTAT
ATGCCTCCCCTCCCCTACATTGCTATAAAATTAAAAGAGAGCTGAGTAGGGGTGATTTTTGAGT
AGTTTTTTTTTTGTCGTTGTTTGTTTGTTTGTTTGCTATTTACCATTTTTTTTAAACTAGGTCA
ATCTTTGACCTTGACCTGTAGGTCATAGTATTTATTTTTTGAAAACTATGGTTTTAGTCCATTT
ACTGGGTCAATTTAAGGAGTAACATCCAAGCTTATAAATAAAAGGAAACAGAAGCTTTGGATAA
AAATTCATGTCTTGCAAAGGATAAGAATTATTTCATGAAATTTTCAGTTTCAGTTTTATGTATG
CATTGCCTGTAATGAGTTGAAATGTAAAATACATTCTCTTTATTTTAATTAGGGATAAAAAGAA
TTTATCAGAGGCCTTCTGTATAAATGCATTGTTCGCCATTTACCTCTTTTTCTTTAATTCTTTC
AAAGTCCTTCCCTAGGAGTCTATCAACCCCGTCTGATGAGCTCAGATGCAGTTTTTTTTCCTCA
ATTTTTGTTTTTAATTTCTGTGTTAGCCATTCTGTCCCCAACCCCCTTATCCCCTCCATCCTAT
TTCTTGCTAGATGTGGCAAGCACATGACTATAATTCCTGCATTTGTAGAGACAGAAGGATCAGG
AGTTCAAGTGTCGTTTGGATTACATGACAGCAAAAATGACCTAATTTTTCAGTTTGTCATATGC
TACTGATTTTCTTCCCTCTTGGAGACTTTAAACAGCCTCCTGGCTCTGAAGAAAAAAGGAGTCA
GCGTATTCTCTTTTAGTATTCATTCTTTCGAGTGTGTTTGTGTGTGTATGAATGCAGGTGGTGT
GTACATGTGTGTACTTGCTTTTGCAGAGTTCAGAGGACGACCCCAGAGGTAGTTTCTCAGGTTA
GAGCTTTTGAGATTGCTTCTCATTTGCCTTGCTAGGCTGGTTAGCCAGTGAGCCCCAGGAAACT
GTCTCTACTTCCTTAGAGCTGGGAGTATAAACCCTTGGTCTTTAACCAACCAACTAAACAAACA
AACAACAACAACAACAAAAAACACAAAACAAACAAGGGATCCCACTTGTCCTCAGGCAAGGCAG
GCACTTCACTGACTAAGACTCCATCCAGACCCATCTGGTTTCTTACCAAGACATAGCTCTCAGA
GTGCACAACATCTCGGCCTGCAACTCAGTGAGTTTTCCTACCCGAGTTGGTCTGGGTGAGCACT
GTGGGGGAAACAGATTATTCAGGAGACCGGTGTGTGACGAGTTGGTCTGGGTGAGCACTGTGGG
GGAAACAGATTATTCAGGAGACCGGTGTGTGACGAAGAAATAGGTAGAGTTTTCTCTCATTGTT
TTCTTCAAAATGTTCAGTAGTCCCCCAGCCCCCACAATTTGTAGTTTTTCTTTCTGTAATTCCA
GTTATTGGTGTTATCATCTTAAGGCCCCAAACAATACAATGAAAAGTCCTGGAAATAAACTCTT
TCTCAGTTTAAAATTGCTCGTTATTCCAAACAGTGTGAGAGCACACGTTATACTGGTCCATCCT
TTTTTTTTTTTTTTGAGACAAGCGTTGTTCCTTTGTGGGGCGTTTCAGTGCTACTTGCCTGTGA
GTCCTTTAGAAACCATCGCAGTTAATCAGATCGGTTATCTCAGAAACCCTTCCTATTTAATAAT
GTCCCCAAAGAACAAGAGTGATCGTAATACACGTTTACTATAATATCAGCAAACTATTAGTGGT
CATTGTTAATTCATTACTGAGTCGAATTTACCAGTTAAGCTTTTTGTAGGAATGTAACGGGGAG
GTGAAAACCGGTGTATGTGGCTTTGGGTGTTGTTCCTAGTTTCAGGTAACAGCTGGGGATCTGG
AATGTGTCTCTCTTAGAGGAAAGAGGACCATTGCAATAATGTTTAGGGGTGCACAAGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGCTAGTGGCAGTCAGAGGACAATACTAGGTGTTGGTTCTT
ACCTTCCACATTGGTGGAAACAGTGTCTGTCTTTGGCTGCTGTGTGTGCCAGGCTAGCTGGCTG
GAGAGGTTCCTTCTTTCTCCGCCCCCCCTCATGCAGTAGGAATGCTGGGGTTATGGGCTACAAT
GCCTGGTTTATTTGGCTTCTGGGATCCAAACTGAGGTCCTAGCCATTGTCACAAGCTAAGCTGT
GCATTGCTTAGCTTTTCGAGGTCTCTGACTGAGTTGGGAAGTGTTCATGAGGGATGCATGGTGA
TTGGGAACTGGTGAAGAATTGACTGGGACCAGCAGAGCTAAGAGGTGGAAGAAAGGTGGCGTCA
TTCCAGGAAGATTTCAGAGAAGAAAACCTTACTCGAATCTCAGAACAGAATGGAAACATAGAAA
TTAATTTGCTATCGCCTCTCTGCCAAGTTATGACATTTTAAATCTCAAAACACAAGGGCTTGTT
CCCTTACAGTTTTGTGGATTCTCAGGGAGAATTTGCTTCCTTGGGCTGGTGGCCCCTTCTGTCT
GTAAGGACATTTTTTTTCTTTCAATCTCTATGCCTGTGGTCTCACCACTTTCTCCCTGTCCCCC
TCTTAAAGGGAAGCTTGTGGTTATATTTAGGGCCCACCAGGATAATCTAGGATAATCAGCTCAC
CTCCAAATCCTTATTTAATTGCATCTGCCGAGTCCCTTGTCGAGTAAGCGCCACTCACAGGTTC
TGGAGTTGAGGATGTGGACGCCCAGGTTTTGTTTTTCAAGGATTTTTCTTGACAAAGGGAAGGG
CTATCAGATATTCAGAGCCAGCCCGCTCTCCTTTTTAGTATGATGTTGATATTCCAGCCCAGCA
CATTGTGGATTTATTTTCTTGAAGGAGCATGTTTAGTGAGTCCCCGTTAGCTAATAAAACTAGT
TGAGCCAAGACTGACATTCAGGTTGCTGTTCAGTGTAAGAGCACATTGAGCTTTTGGGTCTTCT
TTTCGAGGCTGGTAGAGCAAGCCTCTCTCCATGGTTTCCTGGTTAGCTTGGTTTCTTCCCTTTG
CCATGTCTTCCTCTAGCTTATAAGGCCCCATCCTCCTCTTATTCCAAAGGCCACTTTCCTTGAT
ATCCCTTGCAAACTTGATGACTTCTGGTGATAGGAATAAACTCTATCTCAGTCTGACGTGTGAC
CGGATGGGTCAACCACCAACAGGGCTGTGCTCTTGGTGCTGAAGGGGAAGACTCCTTTCTTGTT
CTTTCCAGCTCTATCCAGTTTTGTGTGGCTTGTGACAGGATAATTCCCATCTGGACCTCCAGCT
TCACCAGATCTTTTTTCCCCTGCATCTTCTGTAAGGACTTAAGGCCCACACAGATAATCCAGGA
TCATCTCAGCCCCAGATCCTTAACCCAATTAGCATAATTAATTTGTAAAGACCCTATTCCGAAT
AAGCCCTGTGTATGCCAGGCCTGTTGTGGCTGAGAATATATCTGAGAGAAACAAGTTGAAGGGA
CAAGGAGCAAAGGAGCTGCCCTCTGTGTCTCCCCGCCCTTCAGCGAGAGTCTGGAAAGAGAACC
GAGGTGCTACTGCAGTGGATGAGTAGAGAAGAGTCTGCATCCAGTGCTGGTGAGCTTGTCTGGC
TATAGGGAGCCTGCTGGGGGAAACTTACAGCTTCAGAAGACTCCTGGAGAGCCTCTCCCTCCAC
ACTCTCCCTTTGAGCAGTCAGTGCCTCTCTGCTGGAGAACCTGTGCTGGGTGTGCCCCAGAGCT
GGCTTTGACTGTAGCCTGTCAGGCTCTCCCTGGACCTCACGGAACAGCATTGCCAGCCACACGG
CTTCCAACAAATCACCTCTTTTCATGCTGTTTGGCACAGATCGAATCTACAGGTTATACAATGG
TCGATGGAGCAATGATCCTTTCTGTGCTAATGATGATGGCTCTCCCTTCCCCGAGTATGGAAGC
ACTAACTCTTCATTCCCCAACCCAGTATCAGCCAGATGTACTTCCCAGTACCTTAGATGAGGAG
CCCAAGGTCAACCCGAAGCTTTACATGTGTGTGTGTGAGGGCCTCTCCTGCGGGAACGAGGACC
ACTGTGAGGGCCAGCAGTGTTTTTCCTCCCTGAGCGTCAATGATGGCTTCCGCGTCTACCAGAA
GGGCTGCTTTCAGGTCTATGAGCAGGGGAAGATGACGTGTAAGACCCCGCCGTCGCCTGGCCAG
GCTGTGGAGTGCTGCCAAGGGGACTGGTGCAACAGGAACGTCACGGCCCGGCTGCCCACTAAAG
GGAAATCCTTCCCTGGATCGCAGAACTTCCACCTGGAAGTTGGCCTTATCATCCTCTCCGTGGT
GTTTGCGGTATGCCTTTTCGCTTGCATCCTTGGCGTTGCTCTCAGGAAGTTTAAAAGGCGCAAT
CAAGAGCGCCTGAACCCCAGAGACGTGGAGTATGGTACTATCGAAGGGCTCATCACCACCAACG
TCGGAGATAGCACTCTAGCGGAATTACTAGATCACTCGTGTACATCAGGAAGTGGCTCCGGTCT
TCCTTTTCTGGTACAGAGAACTGTGGCTCGACAGATAACCCTGTTGGAGTGTGTCGGGAAGGGC
CGGTATGGAGAAGTGTGGAGGGGCAGCTGGCAAGGCGAAAATGTTGCTGTGAAGATCTTCTCCT
CCCGTGATGAGAAGTCGTGGTTCAGGGAGACAGAATTGTACAACACGGTGATGCTGAGGCATGA
GAATATCTTAGGTTTCATTGCTTCAGACATGACCTCTAGACACTCCAGTACCCAGCTGTGGCTC
ATTACACATTACCACGAAATGGGATCGTTGTATGACTACCTTCAGCTCACCACTCTGGACACGG
TTAGCTGCCTTCGGATCGTGTTGTCCATAGCCAGCGGCCTTGCACACTTGCACATAGAGATATT
TGGGACCCAGGGGAAGTCTGCCATCGCCCACCGAGATCTAAAGAGCAAAAACATCCTCGTGAAG
AAGAACGGACAGTGCTGCATAGCAGATTTGGGCCTGGCAGTCATGCATTCCCAGAGCACGAATC
AGCTTGATGTGGGAAACAACCCCCGTGTGGGGACCAAGCGCTACATGGCCCCTGAAGTGCTTGA
TGAAACCATCCAAGTGGATTGCTTTGATTCTTATAAGAGGGTCGATATTTGGGCCTTTGGCCTC
GTTCTGTGGGAAGTGGCCAGGAGGATGGTGAGCAATGGTATAGTGGAAGATTACAAGCCACCAT
TCTATGATGTTGTTCCCAATGACCCAAGTTTTGAAGATATGAGGAAAGTTGTCTGTGTGGATCA
ACAGAGGCCAAACATACCTAACAGATGGTTCTCAGACCCGACATTAACTTCTCTGGCGAAGCTG
ATGAAAGAATGCTGGTACCAGAACCCATCCGCCAGACTCACAGCTCTACGTATCAAAAAGACTT
TGACCAAAATTGATAACTCCCTAGACAAATTAAAAACTGACTGTTGACATTGTCACCGGTGTCA
AGAAGGAGAGTCAATGCTGTCATTGTCCAGCTGGGACCTAATGCTGGCCTGACTGGTTGTCAGA
ACAGAATCCATCTGTCCCCCTCTCCCCCCAACTCCCGAAGTGGCTGCTTTGACAAAAGCAGATG
TCTCTTCCCAGCCATGTTCCGGGGGAGACACCAAAACCACCCTAACCTCGCTCAGAAACTGTGA
CTCGAGCACTTGATGAACTGTTCACACCACAAAGACTAACGGTGGGCAGGTATGTTTGCAAGGG
GGAGGGAAGTGGAGGAGCACAGAGAGATCCTGCAGGAGATCTGGGCATTAGGACAGTGGCTCTT
TGCGTATCTTCCACGGGTCTCCTAGACTCGCCCCACGGGAAACTCAAGGAGGCGGTGAATTCGT
AATCAGCAATATTGGCTGCGCCTACTCTTCTCTGTTGCACTAGGAATTCTCTGCATTCCTTACT
TGCACTGTCGTCCTTAATCTTAAAGACCCGACTTGCCAAAACATTGGCTGCCTACTTCACTGGC
CTGTCTCTGGACAATAGGAATTCAATCTGGCGAAACAAAAATGTAATGTTGGACTTTGCTGCAT
TTTACACACGTGCCGATGTTTACAACGATGCAAACATTAGGAATTGTTTAGACACAACTTTGCA
AATTATTTATTACTGGTGCACTTAGCAGTTTTTGTTTTTTTGTTTTTTTTTTGTTTTGTTTTGT
TTTTATATATAAAACTGCCTCGTGCGTATGTTAAAGCTTATTTTTATGTGGTCTTATGATTTTA
TTACCGAAATGTTTTTAACACCCGATTCTGAAATGGATGTTTTCTTTTATTATCAGTTAAATTC
ACATTTTAAATGCTTCACTTTTTTTTTTATGTGTGTAGACTGTAACTTTCTTTTCAGTTAGTAT
ACAGAACGTATTTAGCCATTACCCATGCAACACCACCCAATATATTACTGATTTAGAAGCAAAG
ATTTCAGTAGAATTTTAGTCCCAAACGCTGTGGGGGGGAAATGCATCTTCTTCGGAACTATCCA
TTACGTGCATTTAAACTCTGCCAGAAAAAAAAATAACTATTTTGTTTTAATCTACTTTTTGTAT
TTAGTAGTTATTTGTATAAATTAAATAAACTGTTTTCAAGTCAAA

hide sequence

RefSeq Acc Id:

XM_008761867 ⟹ XP_008760089

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	42,978,558 - 43,097,892 (-)	NCBI
Rnor_6.0	3	44,432,476 - 44,478,216 (-)	NCBI

Sequence:

show sequence

GCTGTGCCTTTAGATTAGTTAAAGCTCCTGGTGTTACACAGCCAACCCGGGTGTAATATGAGAA
ATGGTGTCTCACTAACTCTTCATTCCCCAACCCAGTATCAGCCAGATGTACTTCCCAGTACCTT
AGATGAGGAGCCCAAGGTCAACCCGAAGCTTTACATGTGTGTGTGTGAGGGCCTCTCCTGCGGG
AACGAGGACCACTGTGAGGGCCAGCAGTGTTTTTCCTCCCTGAGCGTCAATGATGGCTTCCGCG
TCTACCAGAAGGGCTGCTTTCAGGTCTATGAGCAGGGGAAGATGACGTGTAAGACCCCGCCGTC
GCCTGGCCAGGCTGTGGAGTGCTGCCAAGGGGACTGGTGCAACAGGAACGTCACGGCCCGGCTG
CCCACTAAAGGGAAATCCTTCCCTGGATCGCAGAACTTCCACCTGGAAGTTGGCCTTATCATCC
TCTCCGTGGTGTTTGCGGTATGCCTTTTCGCTTGCATCCTTGGCGTTGCTCTCAGGAAGTTTAA
AAGGCGCAATCAAGAGCGCCTGAACCCCAGAGACGTGGAGTATGGTACTATCGAAGGGCTCATC
ACCACCAACGTCGGAGATAGCACTCTAGCGGAATTACTAGATCACTCGTGTACATCAGGAAGTG
GCTCCGGTCTTCCTTTTCTGGTACAGAGAACTGTGGCTCGACAGATAACCCTGTTGGAGTGTGT
CGGGAAGGGCCGGTATGGAGAAGTGTGGAGGGGCAGCTGGCAAGGCGAAAATGTTGCTGTGAAG
ATCTTCTCCTCCCGTGATGAGAAGTCGTGGTTCAGGGAGACAGAATTGTACAACACGGTGATGC
TGAGGCATGAGAATATCTTAGGTTTCATTGCTTCAGACATGACCTCTAGACACTCCAGTACCCA
GCTGTGGCTCATTACACATTACCACGAAATGGGATCGTTGTATGACTACCTTCAGCTCACCACT
CTGGACACGGTTAGCTGCCTTCGGATCGTGTTGTCCATAGCCAGCGGCCTTGCACACTTGCACA
TAGAGATATTTGGGACCCAGGGGAAGTCTGCCATCGCCCACCGAGATCTAAAGAGCAAAAACAT
CCTCGTGAAGAAGAACGGACAGTGCTGCATAGCAGATTTGGGCCTGGCAGTCATGCATTCCCAG
AGCACGAATCAGCTTGATGTGGGAAACAACCCCCGTGTGGGGACCAAGCGCTACATGGCCCCTG
AAGTGCTTGATGAAACCATCCAAGTGGATTGCTTTGATTCTTATAAGAGGGTCGATATTTGGGC
CTTTGGCCTCGTTCTGTGGGAAGTGGCCAGGAGGATGGTGAGCAATGGTATAGTGGAAGATTAC
AAGCCACCATTCTATGATGTTGTTCCCAATGACCCAAGTTTTGAAGATATGAGGAAAGTTGTCT
GTGTGGATCAACAGAGGCCAAACATACCTAACAGATGGTTCTCAGACCCGACATTAACTTCTCT
GGCGAAGCTGATGAAAGAATGCTGGTACCAGAACCCATCCGCCAGACTCACAGCTCTACGTATC
AAAAAGACTTTGACCAAAATTGATAACTCCCTAGACAAATTAAAAACTGACTGTTGACATTGTC
ACCGGTGTCAAGAAGGAGAGTCAATGCTGTCATTGTCCAGCTGGGACCTAATGCTGGCCTGACT
GGTTGTCAGAACAGAATCCATCTGTCCCCCTCTCCCCCCAACTCCCGAAGTGGCTGCTTTGACA
AAAGCAGATGTCTCTTCCCAGCCATGTTCCGGGGGAGACACCAAAACCACCCTAACCTCGCTCA
GAAACTGTGACTCGAGCACTTGATGAACTGTTCACACCACAAAGACTAACGGTGGGCAGGTATG
TTTGCAAGGGGGAGGGAAGTGGAGGAGCACAGAGAGATCCTGCAGGAGATCTGGGCATTAGGAC
AGTGGCTCTTTGCGTATCTTCCACGGGTCTCCTAGACTCGCCCCACGGGAAACTCAAGGAGGCG
GTGAATTCGTAATCAGCAATATTGGCTGCGCCTACTCTTCTCTGTTGCACTAGGAATTCTCTGC
ATTCCTTACTTGCACTGTCGTCCTTAATCTTAAAGACCCGACTTGCCAAAACATTGGCTGCCTA
CTTCACTGGCCTGTCTCTGGACAATAGGAATTCAATCTGGCGAAACAAAAATGTAATGTTGGAC
TTTGCTGCATTTTACACACGTGCCGATGTTTACAACGATGCAAACATTAGGAATTGTTTAGACA
CAACTTTGCAAATTATTTATTACTGGTGCACTTAGCAGTTTTTGTTTTTTTGTTTTTTTTTTGT
TTTGTTTTGTTTTTATATATAAAACTGCCTCGTGCGTATGTTAAAGCTTATTTTTATGTGGTCT
TATGATTTTATTACCGAAATGTTTTTAACACCCGATTCTGAAATGGATGTTTTCTTTTATTATC
AGTTAAATTCACATTTTAAATGCTTCACTTTTTTTTTTATGTGTGTAGACTGTAACTTTCTTTT
CAGTTAGTATACAGAACGTATTTAGCCATTACCCATGCAACACCACCCAATATATTACTGATTT
AGAAGCAAAGATTTCAGTAGAATTTTAGTCCCAAACGCTGTGGGGGGGAAATGCATCTTCTTCG
GAACTATCCATTACGTGCATTTAAACTCTGCCAGAAAAAAAAATAACTATTTTGTTTTAATCTA
CTTTTTGTATTTAGTAGTTATTTGTATAAATTAAATAAACTGTTTTCAAGTCAAA

hide sequence

RefSeq Acc Id:

XM_017592054 ⟹ XP_017447543

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	42,978,558 - 43,056,626 (-)	NCBI
Rnor_6.0	3	44,432,476 - 44,510,332 (-)	NCBI

Sequence:

show sequence

GGGTTGCTCCTCAGTCCTGCCCTCTTCCATGATTTAGAAGGATTAGGTCCTGCTAGAATAGATG
TCACTTCTTTGCTGCTCTGTGTGAGTAGGACGCCATGGCATCCAGTGCTGGTGAGCTTGTCTGG
CTATAGGGAGCCTGCTGGGGGAAACTTACAGCTTCAGAAGACTCCTGGAGAGCCTCTCCCTCCA
CACTCTCCCTTTGAGCAGTCAGTGCCTCTCTGCTGGAGAACCTGTGCTGGGTGTGCCCCAGAGC
TGGCTTTGACTGTAGCCTGTCAGGCTCTCCCTGGACCTCACGGAACAGCATTGCCAGCCACACG
GCTTCCAACAAATCACCTCTTTTCATGCTGTTTGGCACAGATCGAATCTACAGGTTATACAATG
GTCGATGGAGCAATGATCCTTTCTGTGCTAATGATGATGGCTCTCCCTTCCCCGAGTATGGAAG
CACTAACTCTTCATTCCCCAACCCAGTATCAGCCAGATGTACTTCCCAGTACCTTAGATGAGGA
GCCCAAGGTCAACCCGAAGCTTTACATGTGTGTGTGTGAGGGCCTCTCCTGCGGGAACGAGGAC
CACTGTGAGGGCCAGCAGTGTTTTTCCTCCCTGAGCGTCAATGATGGCTTCCGCGTCTACCAGA
AGGGCTGCTTTCAGGTCTATGAGCAGGGGAAGATGACGTGTAAGACCCCGCCGTCGCCTGGCCA
GGCTGTGGAGTGCTGCCAAGGGGACTGGTGCAACAGGAACGTCACGGCCCGGCTGCCCACTAAA
GGGAAATCCTTCCCTGGATCGCAGAACTTCCACCTGGAAGTTGGCCTTATCATCCTCTCCGTGG
TGTTTGCGGTATGCCTTTTCGCTTGCATCCTTGGCGTTGCTCTCAGGAAGTTTAAAAGGCGCAA
TCAAGAGCGCCTGAACCCCAGAGACGTGGAGTATGGTACTATCGAAGGGCTCATCACCACCAAC
GTCGGAGATAGCACTCTAGCGGAATTACTAGATCACTCGTGTACATCAGGAAGTGGCTCCGGTC
TTCCTTTTCTGGTACAGAGAACTGTGGCTCGACAGATAACCCTGTTGGAGTGTGTCGGGAAGGG
CCGGTATGGAGAAGTGTGGAGGGGCAGCTGGCAAGGCGAAAATGTTGCTGTGAAGATCTTCTCC
TCCCGTGATGAGAAGTCGTGGTTCAGGGAGACAGAATTGTACAACACGGTGATGCTGAGGCATG
AGAATATCTTAGGTTTCATTGCTTCAGACATGACCTCTAGACACTCCAGTACCCAGCTGTGGCT
CATTACACATTACCACGAAATGGGATCGTTGTATGACTACCTTCAGCTCACCACTCTGGACACG
GTTAGCTGCCTTCGGATCGTGTTGTCCATAGCCAGCGGCCTTGCACACTTGCACATAGAGATAT
TTGGGACCCAGGGGAAGTCTGCCATCGCCCACCGAGATCTAAAGAGCAAAAACATCCTCGTGAA
GAAGAACGGACAGTGCTGCATAGCAGATTTGGGCCTGGCAGTCATGCATTCCCAGAGCACGAAT
CAGCTTGATGTGGGAAACAACCCCCGTGTGGGGACCAAGCGCTACATGGCCCCTGAAGTGCTTG
ATGAAACCATCCAAGTGGATTGCTTTGATTCTTATAAGAGGGTCGATATTTGGGCCTTTGGCCT
CGTTCTGTGGGAAGTGGCCAGGAGGATGGTGAGCAATGGTATAGTGGAAGATTACAAGCCACCA
TTCTATGATGTTGTTCCCAATGACCCAAGTTTTGAAGATATGAGGAAAGTTGTCTGTGTGGATC
AACAGAGGCCAAACATACCTAACAGATGGTTCTCAGACCCGACATTAACTTCTCTGGCGAAGCT
GATGAAAGAATGCTGGTACCAGAACCCATCCGCCAGACTCACAGCTCTACGTATCAAAAAGACT
TTGACCAAAATTGATAACTCCCTAGACAAATTAAAAACTGACTGTTGACATTGTCACCGGTGTC
AAGAAGGAGAGTCAATGCTGTCATTGTCCAGCTGGGACCTAATGCTGGCCTGACTGGTTGTCAG
AACAGAATCCATCTGTCCCCCTCTCCCCCCAACTCCCGAAGTGGCTGCTTTGACAAAAGCAGAT
GTCTCTTCCCAGCCATGTTCCGGGGGAGACACCAAAACCACCCTAACCTCGCTCAGAAACTGTG
ACTCGAGCACTTGATGAACTGTTCACACCACAAAGACTAACGGTGGGCAGGTATGTTTGCAAGG
GGGAGGGAAGTGGAGGAGCACAGAGAGATCCTGCAGGAGATCTGGGCATTAGGACAGTGGCTCT
TTGCGTATCTTCCACGGGTCTCCTAGACTCGCCCCACGGGAAACTCAAGGAGGCGGTGAATTCG
TAATCAGCAATATTGGCTGCGCCTACTCTTCTCTGTTGCACTAGGAATTCTCTGCATTCCTTAC
TTGCACTGTCGTCCTTAATCTTAAAGACCCGACTTGCCAAAACATTGGCTGCCTACTTCACTGG
CCTGTCTCTGGACAATAGGAATTCAATCTGGCGAAACAAAAATGTAATGTTGGACTTTGCTGCA
TTTTACACACGTGCCGATGTTTACAACGATGCAAACATTAGGAATTGTTTAGACACAACTTTGC
AAATTATTTATTACTGGTGCACTTAGCAGTTTTTGTTTTTTTGTTTTTTTTTTGTTTTGTTTTG
TTTTTATATATAAAACTGCCTCGTGCGTATGTTAAAGCTTATTTTTATGTGGTCTTATGATTTT
ATTACCGAAATGTTTTTAACACCCGATTCTGAAATGGATGTTTTCTTTTATTATCAGTTAAATT
CACATTTTAAATGCTTCACTTTTTTTTTTATGTGTGTAGACTGTAACTTTCTTTTCAGTTAGTA
TACAGAACGTATTTAGCCATTACCCATGCAACACCACCCAATATATTACTGATTTAGAAGCAAA
GATTTCAGTAGAATTTTAGTCCCAAACGCTGTGGGGGGGAAATGCATCTTCTTCGGAACTATCC
ATTACGTGCATTTAAACTCTGCCAGAAAAAAAAATAACTATTTTGTTTTAATCTACTTTTTGTA
TTTAGTAGTTATTTGTATAAATTAAATAAACTGTTTTCAAGTCAAA

hide sequence

RefSeq Acc Id:

XM_039105896 ⟹ XP_038961824

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	42,978,558 - 43,097,892 (-)	NCBI

RefSeq Acc Id:

XM_039105897 ⟹ XP_038961825

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	42,978,558 - 43,084,469 (-)	NCBI

RefSeq Acc Id:

XM_039105898 ⟹ XP_038961826

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	42,978,558 - 43,082,359 (-)	NCBI

RefSeq Acc Id:

XM_039105899 ⟹ XP_038961827

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	42,978,558 - 43,097,892 (-)	NCBI

RefSeq Acc Id:

XM_039105900 ⟹ XP_038961828

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	42,978,558 - 43,084,436 (-)	NCBI

RefSeq Acc Id:

XM_039105902 ⟹ XP_038961830

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	42,978,558 - 43,082,359 (-)	NCBI

RefSeq Acc Id:

XM_039105903 ⟹ XP_038961831

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	42,978,558 - 43,097,892 (-)	NCBI

RefSeq Acc Id:

XM_039105904 ⟹ XP_038961832

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	42,978,558 - 43,097,892 (-)	NCBI

RefSeq Acc Id:

XM_039105905 ⟹ XP_038961833

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	42,978,558 - 43,097,892 (-)	NCBI

RefSeq Acc Id:

XM_039105906 ⟹ XP_038961834

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	42,978,558 - 43,097,892 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_077812	(Get FASTA)	NCBI Sequence Viewer
	XP_008760089	(Get FASTA)	NCBI Sequence Viewer
	XP_017447543	(Get FASTA)	NCBI Sequence Viewer
	XP_038961824	(Get FASTA)	NCBI Sequence Viewer
	XP_038961825	(Get FASTA)	NCBI Sequence Viewer
	XP_038961826	(Get FASTA)	NCBI Sequence Viewer
	XP_038961827	(Get FASTA)	NCBI Sequence Viewer
	XP_038961828	(Get FASTA)	NCBI Sequence Viewer
	XP_038961830	(Get FASTA)	NCBI Sequence Viewer
	XP_038961831	(Get FASTA)	NCBI Sequence Viewer
	XP_038961832	(Get FASTA)	NCBI Sequence Viewer
	XP_038961833	(Get FASTA)	NCBI Sequence Viewer
	XP_038961834	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA40673	(Get FASTA)	NCBI Sequence Viewer
	AAI67754	(Get FASTA)	NCBI Sequence Viewer
	AAU04390	(Get FASTA)	NCBI Sequence Viewer
	CAT04597	(Get FASTA)	NCBI Sequence Viewer
	EDM00402	(Get FASTA)	NCBI Sequence Viewer
	EDM00403	(Get FASTA)	NCBI Sequence Viewer
	P80201	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_077812 ⟸ NM_024486
- Peptide Label:	precursor
- UniProtKB:	P80201 (UniProtKB/Swiss-Prot), B3DM96 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVDGAMILSVLMMMALPSPSMEDEEPKVNPKLYMCVCEGLSCGNEDHCEGQQCFSSLSVNDGFR VYQKGCFQVYEQGKMTCKTPPSPGQAVECCQGDWCNRNVTARLPTKGKSFPGSQNFHLEVGLII LSVVFAVCLFACILGVALRKFKRRNQERLNPRDVEYGTIEGLITTNVGDSTLAELLDHSCTSGS GSGLPFLVQRTVARQITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVM LRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLH IEIFGTQGKSAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAP EVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVV CVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKIDNSLDKLKTDC hide sequence

RefSeq Acc Id:

XP_006234276 ⟸ XM_006234214

- Peptide Label:

isoform X3

- Sequence:

show sequence

MVDGAMILSVLMMMALPSPSMEDEEPKVNPKLYMCVCEGLSCGNEDHCEGQQCFSSLSVNDGFR
VYQKGCFQVYEQGKMTCKTPPSPGQAVECCQGDWCNRNVTARLPTKGKSFPGSQNFHLEVGLII
LSVVFAVCLFACILGVALRKFKRRNQERLNPRDVEYGTIEGLITTNVGDSTLAELLDHSCTSGS
GSGLPFLVQRTVARQITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVM
LRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLH
IEIFGTQGKSAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAP
EVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVV
CVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKIDNSLDKLKTDC

hide sequence

RefSeq Acc Id:

XP_008760086 ⟸ XM_008761864

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVDGAMILSVLMMMALPSPSMEALTLHSPTQYQPDVLPSTLDEEPKVNPKLYMCVCEGLSCGNE
DHCEGQQCFSSLSVNDGFRVYQKGCFQVYEQGKMTCKTPPSPGQAVECCQGDWCNRNVTARLPT
KGKSFPGSQNFHLEVGLIILSVVFAVCLFACILGVALRKFKRRNQERLNPRDVEYGTIEGLITT
NVGDSTLAELLDHSCTSGSGSGLPFLVQRTVARQITLLECVGKGRYGEVWRGSWQGENVAVKIF
SSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLD
TVSCLRIVLSIASGLAHLHIEIFGTQGKSAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQST
NQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKP
PFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKK
TLTKIDNSLDKLKTDC

hide sequence

RefSeq Acc Id:

XP_008760089 ⟸ XM_008761867

- Peptide Label:

isoform X2

- Sequence:

show sequence

MRNGVSLTLHSPTQYQPDVLPSTLDEEPKVNPKLYMCVCEGLSCGNEDHCEGQQCFSSLSVNDG
FRVYQKGCFQVYEQGKMTCKTPPSPGQAVECCQGDWCNRNVTARLPTKGKSFPGSQNFHLEVGL
IILSVVFAVCLFACILGVALRKFKRRNQERLNPRDVEYGTIEGLITTNVGDSTLAELLDHSCTS
GSGSGLPFLVQRTVARQITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKSWFRETELYNT
VMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAH
LHIEIFGTQGKSAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYM
APEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRK
VVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKIDNSLDKLKTDC

hide sequence

RefSeq Acc Id:	XP_017447543 ⟸ XM_017592054
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K2P7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVDGAMILSVLMMMALPSPSMEALTLHSPTQYQPDVLPSTLDEEPKVNPKLYMCVCEGLSCGNE DHCEGQQCFSSLSVNDGFRVYQKGCFQVYEQGKMTCKTPPSPGQAVECCQGDWCNRNVTARLPT KGKSFPGSQNFHLEVGLIILSVVFAVCLFACILGVALRKFKRRNQERLNPRDVEYGTIEGLITT NVGDSTLAELLDHSCTSGSGSGLPFLVQRTVARQITLLECVGKGRYGEVWRGSWQGENVAVKIF SSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLD TVSCLRIVLSIASGLAHLHIEIFGTQGKSAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQST NQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKP PFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKK TLTKIDNSLDKLKTDC hide sequence

RefSeq Acc Id:

ENSRNOP00000072326 ⟸ ENSRNOT00000087071

RefSeq Acc Id:

ENSRNOP00000006963 ⟸ ENSRNOT00000006963

RefSeq Acc Id:	XP_038961833 ⟸ XM_039105905
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038961831 ⟸ XM_039105903
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038961832 ⟸ XM_039105904
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038961824 ⟸ XM_039105896
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038961834 ⟸ XM_039105906
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038961827 ⟸ XM_039105899
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038961825 ⟸ XM_039105897
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038961828 ⟸ XM_039105900
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038961826 ⟸ XM_039105898
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038961830 ⟸ XM_039105902
- Peptide Label:	isoform X1

Protein Domains

GS Protein kinase

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620200	AgrOrtholog
Ensembl Genes	ENSRNOG00000005033	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000006963	UniProtKB/Swiss-Prot
	ENSRNOP00000072326	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000006963	UniProtKB/Swiss-Prot
	ENSRNOT00000087071	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:9089038	IMAGE-MGC_LOAD
InterPro	Activin_recp	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GS_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Kinase-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Prot_kinase_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Protein_kinase_ATP_BS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ser-Thr/Tyr_kinase_cat_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ser/Thr_kinase_AS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TGFB_receptor	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:79558	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:187367	IMAGE-MGC_LOAD
NCBI Gene	79558	ENTREZGENE
PANTHER	PTHR23255	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Activin_recp	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Pkinase_Tyr	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TGF_beta_GS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Acvr1	PhenoGen
PRINTS	ACTIVIN2R	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	PROTEIN_KINASE_ATP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTEIN_KINASE_ST	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PS51256	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	S_TKc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SM00467	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF56112	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K2P7	ENTREZGENE, UniProtKB/TrEMBL
	ACVR1_RAT	UniProtKB/Swiss-Prot
	B3DM96	ENTREZGENE, UniProtKB/TrEMBL
	P80201	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-15	Acvr1	activin A receptor type 1	Acvr1	activin A receptor, type I	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-09	Acvr1	activin A receptor, type I	Acvr1	activin A receptor, type 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Acvr1	activin A receptor, type 1		activin type I receptor	Name updated	1299863	APPROVED
2002-08-07	Acvr1	activin type I receptor			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_function	receptor for activin	724707
gene_physical_interaction	may form a complex with type II activin receptors	724761

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)