Bw31 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bw31 (Body weight QTL 31) Rattus norvegicus

Symbol: Bw31
Name: Body weight QTL 31
RGD ID: 1354589
Previously known as: QTL 23
Trait: body mass   (VT:0001259)    
Measurement Type: body weight   (CMO:0000012)    
LOD Score: 3.3
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8353,651,826 - 98,651,826RGD_MAPPER_PIPELINE
mRatBN7.2333,703,347 - 78,196,190RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0333,477,354 - 81,136,227RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0338,636,977 - 87,839,442RGDRnor5.0
RGSC_v3.4330,253,942 - 76,620,970RGDRGSC3.4
RGSC_v3.1330,150,317 - 76,517,346RGD
Cross Type: intercross
Strains Crossed: LH/Mav LN/Mav 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw31Ratobesity  IDA 1302893 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw31Ratabnormal body weight  QTM 1302893 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw31Ratbody weight  IDA 1302893 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw31Ratcontrol condition  IDA 1302893 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw31Ratbody weighing method  IDA 1302893 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw31RatLH/Mav  IEA 1302893 RGD 
Bw31RatLN/Mav  IEA 1302893 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw31Ratbody mass  IDA 1302893 RGD 


#
Reference Title
Reference Citation
1. Mapping the genetic determinants of hypertension, metabolic diseases, and related phenotypes in the lyon hypertensive rat. Bilusic M, etal., Hypertension 2004 Nov;44(5):695-701. Epub 2004 Sep 27.
2. Identification of a major locus for islet inflammation and fibrosis in the Spontaneously Diabetic Torii rat. Fuse M, etal., Physiol Genomics. 2008 Jul 8;.

Related QTL Description Reference
Bw82 maps to same region RGD:2298688



1 to 20 of 791 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1562961Mbd5methyl-CpG binding domain protein 533358885433738730Rat
41358771LOC120101434uncharacterized LOC12010143433378665333790312Rat
1307271Epc2enhancer of polycomb homolog 233386721933967908Rat
1308539Kif5ckinesin family member 5C33403208234185597Rat
7502848LOC102556679uncharacterized LOC10255667933413506434137136Rat
1562767Lypd6bLy6/Plaur domain containing 6B33419910134360770Rat
1303202Ns5atp4-ps3NS5A transactivated protein 4, pseudogene 333446571534466470Rat
1587119Lypd6Ly6/Plaur domain containing 633448742534632887Rat
11444381Trnav-aac2transfer RNA valine (anticodon AAC) 233455988934559961Rat
41239310LOC120101547fatty acid-binding protein 5-like33458594934586393Rat
1587102Hnrnpa1-ps20heterogeneous nuclear ribonucleoprotein A1, pseudogene 2033467336934674656Rat
1303272Mmadhcmetabolism of cobalamin associated D33470864934726554Rat
7691310LOC102555425uncharacterized LOC10255542533472651434736258Rat
41020350Cep19-ps1centrosomal protein 19, pseudogene 133489813134898840Rat
1359690Rnd3Rho family GTPase 333557192935589283Rat
1359393Tas2r134taste receptor, type 2, member 13433607765236078641Rat
41177880LOC120101491ubiquitin-40S ribosomal protein S27a-like33625497536261863Rat
41102312Rpl29-ps11ribosomal protein L29, pseudogene 1133631504736315697Rat
41165151Rpl28-ps9ribosomal protein L28, pseudogene 933636699136367397Rat
1306676Rbm43RNA binding motif protein 4333639443136404757Rat

1 to 20 of 791 rows
1 to 20 of 630 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10275D3Wox1519536943021969430414Ratregion
10625D3Mgh2012434711353147113655Ratregion
10678D3Mgh2118234187457841874764Ratregion
11260D3Mit820735030267950302886Ratregion
11261D3Wox912735043691350437042Ratregion
11262D3Wox1012635043691350437041Ratregion
11263D3Wox1426635043678550437053Ratregion
11264D3Arb724835043691250437162Ratregion
34146D3Mgh69935318459353184692Ratregion
34336D3Mgh714333945463739454780Ratregion
36047D3Rat4614733684746636847613Ratregion
36261D3Rat3216836822606368226231Ratregion
36311D3Rat3917335853954358539716Ratregion
37282D3Rat10317234539071445390751Ratregion
37282D3Rat10317234539071445390886Ratregion
37394D3Rat12322734480510444805331Ratregion
37510D3Rat10022533819223338192458Ratregion
37538D3Rat11919735522363155223816Ratregion
37588D3Rat18917933871036538710544Ratregion
35317D3Rat3517937013996270140141Ratregion
1 to 20 of 630 rows

Flank 1: (D3Rat98)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2333,703,347 - 33,703,538 (+)MAPPER
Rnor_6.0333,477,354 - 33,477,544NCBI
Rnor_5.0338,636,977 - 38,637,167UniSTS
RGSC_v3.4330,253,942 - 30,254,280RGD
RGSC_v3.4330,253,945 - 30,254,135UniSTS
RGSC_v3.1330,150,317 - 30,150,507RGD
Celera331,894,389 - 31,894,579UniSTS
RH 3.4 Map3398.9RGD
RH 3.4 Map3398.9UniSTS
SHRSP x BN Map315.1498UniSTS
SHRSP x BN Map315.1498RGD
FHH x ACI Map323.97RGD
Cytogenetic Map3q12UniSTS
Peak: (D3Rat45)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0341,510,169 - 41,510,346NCBI
RGSC_v3.4338,709,559 - 38,709,732UniSTS
RGSC_v3.4338,709,558 - 38,709,732RGD
RGSC_v3.1338,605,931 - 38,606,104RGD
RH 3.4 Map3536.1UniSTS
RH 3.4 Map3536.1RGD
RH 2.0 Map3281.2RGD
SHRSP x BN Map325.6698RGD
Flank 2: (D3Rat31)
Rat AssemblyChrPosition (strand)Source
GRCr8398,651,666 - 98,651,826 (+)Marker Load Pipeline
mRatBN7.2378,196,030 - 78,196,190 (+)MAPPER
Rnor_6.0381,136,068 - 81,136,227NCBI
Rnor_5.0387,839,283 - 87,839,442UniSTS
RGSC_v3.4376,620,663 - 76,620,970RGD
RGSC_v3.4376,620,759 - 76,620,918UniSTS
RGSC_v3.1376,517,187 - 76,517,346RGD
Celera377,398,290 - 77,398,449UniSTS
RH 3.4 Map31018.5UniSTS
RH 3.4 Map31018.5RGD
RH 2.0 Map3698.6RGD
SHRSP x BN Map342.8698RGD
Cytogenetic Map3q24UniSTS


1 to 10 of 88 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
1298073Cm13Cardiac mass QTL 132.5heart mass (VT:0007028)heart wet weight (CMO:0000069)32501391138192233Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)32749462144188411Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat

1 to 10 of 88 rows


Database
Acc Id
Source(s)
NCBI Gene Bw31

Note Type Note Reference
qtl_cross_type intercross  
qtl_map locus maps to body weight measured before catheter implantation surgery 1302893
qtl_statistics_details linkage analysis performed with Mapmaker; parametric analysis used for traits with a normal distribution, for others nonparametric analysis used 1302893