Slc4a10 (solute carrier family 4 member 10) - Rat Genome Database

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Gene: Slc4a10 (solute carrier family 4 member 10) Rattus norvegicus
Analyze
Symbol: Slc4a10
Name: solute carrier family 4 member 10
RGD ID: 631407
Description: Enables sodium:bicarbonate symporter activity. Predicted to be involved in several processes, including bicarbonate transport; regulation of short-term neuronal synaptic plasticity; and visual perception. Predicted to act upstream of or within several processes, including brain development; locomotory exploration behavior; and regulation of cellular pH. Located in apical plasma membrane and basolateral plasma membrane. Orthologous to human SLC4A10 (solute carrier family 4 member 10); INTERACTS WITH acrylamide; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Na+ bicarbonate transporter NBCn2-G; Na-bicarbonate cotransporter NBCn2-O; NCBE; sodium-driven chloride bicarbonate exchanger; solute carrier family 4, sodium bicarbonate transporter, member 10; solute carrier family 4, sodium bicarbonate transporter-like, member 10
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2346,665,076 - 46,959,088 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl346,665,265 - 46,957,268 (+)Ensembl
Rnor_6.0347,995,812 - 48,287,897 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl347,995,959 - 48,287,910 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0354,662,196 - 54,953,988 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4343,979,103 - 44,274,283 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1343,875,474 - 44,170,655 (+)NCBI
Celera346,306,173 - 46,598,361 (+)NCBICelera
Cytogenetic Map3q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10993873   PMID:14592810   PMID:18165320   PMID:18319254   PMID:20541593   PMID:21705333   PMID:23056253   PMID:23409100   PMID:23500099   PMID:24905082   PMID:25003116   PMID:26136660  
PMID:26192895  


Genomics

Comparative Map Data
Slc4a10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2346,665,076 - 46,959,088 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl346,665,265 - 46,957,268 (+)Ensembl
Rnor_6.0347,995,812 - 48,287,897 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl347,995,959 - 48,287,910 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0354,662,196 - 54,953,988 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4343,979,103 - 44,274,283 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1343,875,474 - 44,170,655 (+)NCBI
Celera346,306,173 - 46,598,361 (+)NCBICelera
Cytogenetic Map3q21NCBI
SLC4A10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2161,424,332 - 161,985,282 (+)EnsemblGRCh38hg38GRCh38
GRCh382161,620,963 - 161,985,270 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372162,480,926 - 162,841,780 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362162,189,091 - 162,550,032 (+)NCBINCBI36hg18NCBI36
Build 342162,306,452 - 162,665,750NCBI
Celera2156,091,092 - 156,452,030 (+)NCBI
Cytogenetic Map2q24.2NCBI
HuRef2154,363,681 - 154,723,673 (+)NCBIHuRef
CHM1_12162,486,707 - 162,847,707 (+)NCBICHM1_1
Slc4a10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39261,876,815 - 62,157,087 (+)NCBIGRCm39mm39
GRCm39 Ensembl261,876,806 - 62,157,074 (+)Ensembl
GRCm38262,046,472 - 62,326,743 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl262,046,462 - 62,326,730 (+)EnsemblGRCm38mm10GRCm38
MGSCv37261,884,597 - 62,164,800 (+)NCBIGRCm37mm9NCBIm37
MGSCv36261,847,433 - 62,127,565 (+)NCBImm8
Celera263,750,240 - 64,018,815 (+)NCBICelera
Cytogenetic Map2C1.3NCBI
Slc4a10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544911,879,016 - 12,160,065 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544911,879,070 - 12,159,981 (-)NCBIChiLan1.0ChiLan1.0
SLC4A10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B166,287,216 - 166,647,560 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B166,371,645 - 166,647,554 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B48,917,958 - 49,278,724 (+)NCBIMhudiblu_PPA_v0panPan3
SLC4A10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1367,106,897 - 7,392,275 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl367,106,994 - 7,390,398 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha367,248,181 - 7,533,847 (+)NCBI
ROS_Cfam_1.0367,235,661 - 7,521,757 (+)NCBI
UMICH_Zoey_3.1367,251,947 - 7,536,970 (+)NCBI
UNSW_CanFamBas_1.0367,295,870 - 7,581,750 (+)NCBI
UU_Cfam_GSD_1.0367,404,242 - 7,689,637 (+)NCBI
Slc4a10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303124,268,167 - 124,549,520 (+)NCBI
SpeTri2.0NW_00493646917,068,179 - 17,349,563 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC4A10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1568,224,395 - 68,656,318 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11568,342,607 - 68,655,009 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21575,988,553 - 76,105,143 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC4A10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11047,029,924 - 47,390,116 (+)NCBI
ChlSab1.1 Ensembl1047,030,231 - 47,390,123 (+)Ensembl
Vero_WHO_p1.0NW_023666040152,134,807 - 152,512,388 (-)NCBI
Slc4a10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247323,541,525 - 3,849,805 (-)NCBI


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
2313049Bss72Bone structure and strength QTL 722.60.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2313076Bss74Bone structure and strength QTL 7420.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)32749462150302886Rat
2313079Bss73Bone structure and strength QTL 731.5tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)32749462150302886Rat
2313101Bmd76Bone mineral density QTL 763.60.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)32749462150302886Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32824968773249687Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32824968773249687Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32824968773249687Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32824968773249687Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32846857173468571Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33068464275684642Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33068464275684642Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33142640370668733Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33142640370668733Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33142640370668733Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33142640370668733Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33142640370668733Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33142640370668733Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33370334761017857Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
10450852Stl33Serum triglyceride level QTL 333.40.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)33819223350749747Rat
10450816Scl75Serum cholesterol level QTL 754.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
10450813Scl74Serum cholesterol level QTL 745.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
4889975Bmd81Bone mineral density QTL 814.3tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)33871036550302886Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)33945463753296578Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)33945463762951183Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:329
Count of miRNA genes:198
Interacting mature miRNAs:231
Transcripts:ENSRNOT00000007218, ENSRNOT00000044638, ENSRNOT00000064344, ENSRNOT00000067545, ENSRNOT00000068238
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 52
Low 6 3 2 2 16 22 21 2 2
Below cutoff 2 31 25 15 16 15 6 6 6 13 20 6 6

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_178092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF439855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF439856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY579373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY579374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY579375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY579376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY579377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JX073715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JX073716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JX073717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JX073718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF305251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF736947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF736948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF736949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF736950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ452197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM209338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY703228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000007218   ⟹   ENSRNOP00000007218
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl346,776,635 - 46,957,268 (+)Ensembl
Rnor_6.0 Ensembl348,106,099 - 48,279,549 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000044638   ⟹   ENSRNOP00000045491
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl346,766,744 - 46,957,249 (+)Ensembl
Rnor_6.0 Ensembl348,096,954 - 48,286,058 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000064344   ⟹   ENSRNOP00000059915
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl346,753,831 - 46,957,249 (+)Ensembl
Rnor_6.0 Ensembl348,096,954 - 48,286,058 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000067545   ⟹   ENSRNOP00000059155
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl346,753,864 - 46,957,249 (+)Ensembl
Rnor_6.0 Ensembl348,082,968 - 48,286,058 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000068238   ⟹   ENSRNOP00000062481
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl346,767,515 - 46,957,249 (+)Ensembl
Rnor_6.0 Ensembl348,096,954 - 48,286,058 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082775   ⟹   ENSRNOP00000070628
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl346,665,265 - 46,957,249 (+)Ensembl
Rnor_6.0 Ensembl347,995,959 - 48,287,910 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000087711   ⟹   ENSRNOP00000071402
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl346,753,831 - 46,957,249 (+)Ensembl
Rnor_6.0 Ensembl348,082,935 - 48,286,058 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104570   ⟹   ENSRNOP00000086142
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl346,859,827 - 46,957,249 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115990   ⟹   ENSRNOP00000096659
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl346,665,328 - 46,957,268 (+)Ensembl
RefSeq Acc Id: NM_178092   ⟹   NP_835193
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2346,665,328 - 46,957,268 (+)NCBI
Rnor_6.0347,996,123 - 48,286,077 (+)NCBI
Rnor_5.0354,662,196 - 54,953,988 (+)NCBI
RGSC_v3.4343,979,103 - 44,274,283 (+)RGD
Celera346,306,173 - 46,598,361 (+)RGD
Sequence:
RefSeq Acc Id: XM_006234275   ⟹   XP_006234337
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2346,767,369 - 46,959,088 (+)NCBI
Rnor_6.0348,096,689 - 48,287,897 (+)NCBI
Rnor_5.0354,662,196 - 54,953,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006234276   ⟹   XP_006234338
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2346,767,369 - 46,959,088 (+)NCBI
Rnor_6.0348,096,672 - 48,287,897 (+)NCBI
Rnor_5.0354,662,196 - 54,953,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006234277   ⟹   XP_006234339
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2346,665,076 - 46,959,088 (+)NCBI
Rnor_6.0347,995,812 - 48,287,897 (+)NCBI
Rnor_5.0354,662,196 - 54,953,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006234279   ⟹   XP_006234341
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2346,767,370 - 46,959,088 (+)NCBI
Rnor_6.0348,096,689 - 48,287,897 (+)NCBI
Rnor_5.0354,662,196 - 54,953,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006234280   ⟹   XP_006234342
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2346,767,369 - 46,959,088 (+)NCBI
Rnor_6.0348,096,690 - 48,287,897 (+)NCBI
Rnor_5.0354,662,196 - 54,953,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006234282   ⟹   XP_006234344
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2346,665,077 - 46,959,088 (+)NCBI
Rnor_6.0347,995,813 - 48,287,897 (+)NCBI
Rnor_5.0354,662,196 - 54,953,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006234283   ⟹   XP_006234345
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2346,665,076 - 46,959,088 (+)NCBI
Rnor_6.0347,995,813 - 48,287,897 (+)NCBI
Rnor_5.0354,662,196 - 54,953,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006234284   ⟹   XP_006234346
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2346,767,370 - 46,959,088 (+)NCBI
Rnor_6.0348,096,692 - 48,287,897 (+)NCBI
Rnor_5.0354,662,196 - 54,953,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006234285   ⟹   XP_006234347
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2346,665,078 - 46,959,088 (+)NCBI
Rnor_6.0347,995,814 - 48,287,897 (+)NCBI
Rnor_5.0354,662,196 - 54,953,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591545   ⟹   XP_017447034
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2346,767,370 - 46,959,088 (+)NCBI
Rnor_6.0348,096,691 - 48,287,897 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591546   ⟹   XP_017447035
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2346,767,369 - 46,959,088 (+)NCBI
Rnor_6.0348,096,689 - 48,287,897 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104483   ⟹   XP_038960411
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2346,753,778 - 46,959,088 (+)NCBI
RefSeq Acc Id: XM_039104484   ⟹   XP_038960412
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2346,753,778 - 46,959,088 (+)NCBI
RefSeq Acc Id: XM_039104485   ⟹   XP_038960413
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2346,767,367 - 46,922,650 (+)NCBI
Protein Sequences
Protein RefSeqs NP_835193 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234337 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234338 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234339 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234341 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234342 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234344 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234345 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234346 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234347 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447034 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447035 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960411 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960412 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960413 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAO59639 (Get FASTA)   NCBI Sequence Viewer  
  AAO59640 (Get FASTA)   NCBI Sequence Viewer  
  AAS89262 (Get FASTA)   NCBI Sequence Viewer  
  AAS89263 (Get FASTA)   NCBI Sequence Viewer  
  AAS89264 (Get FASTA)   NCBI Sequence Viewer  
  AAS89265 (Get FASTA)   NCBI Sequence Viewer  
  AAS89266 (Get FASTA)   NCBI Sequence Viewer  
  AFP48940 (Get FASTA)   NCBI Sequence Viewer  
  AFP48941 (Get FASTA)   NCBI Sequence Viewer  
  AFP48942 (Get FASTA)   NCBI Sequence Viewer  
  AFP48943 (Get FASTA)   NCBI Sequence Viewer  
  AGX00872 (Get FASTA)   NCBI Sequence Viewer  
  AHG54966 (Get FASTA)   NCBI Sequence Viewer  
  AHG54967 (Get FASTA)   NCBI Sequence Viewer  
  AHG54968 (Get FASTA)   NCBI Sequence Viewer  
  AHG54969 (Get FASTA)   NCBI Sequence Viewer  
  AHX56802 (Get FASTA)   NCBI Sequence Viewer  
  AIU47272 (Get FASTA)   NCBI Sequence Viewer  
  AVE14257 (Get FASTA)   NCBI Sequence Viewer  
  EDL79002 (Get FASTA)   NCBI Sequence Viewer  
  EDL79003 (Get FASTA)   NCBI Sequence Viewer  
  EDL79004 (Get FASTA)   NCBI Sequence Viewer  
  Q80ZA5 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_835193   ⟸   NM_178092
- UniProtKB: Q80ZA5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006234339   ⟸   XM_006234277
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006234344   ⟸   XM_006234282
- Peptide Label: isoform X8
- UniProtKB: Q80ZA5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006234345   ⟸   XM_006234283
- Peptide Label: isoform X9
- UniProtKB: Q80ZA5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006234347   ⟸   XM_006234285
- Peptide Label: isoform X11
- UniProtKB: Q80ZA5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006234337   ⟸   XM_006234275
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006234338   ⟸   XM_006234276
- Peptide Label: isoform X2
- UniProtKB: D3ZY00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234346   ⟸   XM_006234284
- Peptide Label: isoform X10
- UniProtKB: D4ADV4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234342   ⟸   XM_006234280
- Peptide Label: isoform X6
- UniProtKB: J7FTX0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234341   ⟸   XM_006234279
- Peptide Label: isoform X5
- UniProtKB: D3ZGB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447035   ⟸   XM_017591546
- Peptide Label: isoform X7
- UniProtKB: A0A097PID6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447034   ⟸   XM_017591545
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSRNOP00000070628   ⟸   ENSRNOT00000082775
RefSeq Acc Id: ENSRNOP00000059155   ⟸   ENSRNOT00000067545
RefSeq Acc Id: ENSRNOP00000071402   ⟸   ENSRNOT00000087711
RefSeq Acc Id: ENSRNOP00000045491   ⟸   ENSRNOT00000044638
RefSeq Acc Id: ENSRNOP00000007218   ⟸   ENSRNOT00000007218
RefSeq Acc Id: ENSRNOP00000062481   ⟸   ENSRNOT00000068238
RefSeq Acc Id: ENSRNOP00000059915   ⟸   ENSRNOT00000064344
RefSeq Acc Id: XP_038960411   ⟸   XM_039104483
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038960412   ⟸   XM_039104484
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038960413   ⟸   XM_039104485
- Peptide Label: isoform X14
RefSeq Acc Id: ENSRNOP00000096659   ⟸   ENSRNOT00000115990
RefSeq Acc Id: ENSRNOP00000086142   ⟸   ENSRNOT00000104570
Protein Domains
Band_3_cyto   HCO3_cotransp

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:631407 AgrOrtholog
Ensembl Genes ENSRNOG00000005307 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000007218 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000045491 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000059155 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000059915 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000062481 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000070628 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000071402 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007218 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000044638 UniProtKB/Swiss-Prot
  ENSRNOT00000064344 UniProtKB/Swiss-Prot
  ENSRNOT00000067545 UniProtKB/TrEMBL
  ENSRNOT00000068238 UniProtKB/Swiss-Prot
  ENSRNOT00000082775 UniProtKB/TrEMBL
  ENSRNOT00000087711 UniProtKB/TrEMBL
Gene3D-CATH 3.40.930.10 UniProtKB/TrEMBL
InterPro Band3_cytoplasmic_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCO3_transpt_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCO3_transpt_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na/HCO3_transpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTrfase/Anion_transptr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:295645 UniProtKB/Swiss-Prot
NCBI Gene 295645 ENTREZGENE
PANTHER PTHR11453 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Band_3_cyto UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCO3_cotransp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc4a10 PhenoGen
PRINTS HCO3TRNSPORT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAHCO3TRSPRT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF55804 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs TIGR00834 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A097PID6 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JYF0_RAT UniProtKB/TrEMBL
  D3ZGB5 ENTREZGENE
  D3ZY00 ENTREZGENE
  D4AD03_RAT UniProtKB/TrEMBL
  D4ADV4 ENTREZGENE
  J7FTX0 ENTREZGENE
  Q80ZA5 ENTREZGENE, UniProtKB/Swiss-Prot
  W0NT44_RAT UniProtKB/TrEMBL
  W0NT55_RAT UniProtKB/TrEMBL
  W0NWG8_RAT UniProtKB/TrEMBL
  W0NXI0_RAT UniProtKB/TrEMBL
UniProt Secondary D3ZGB5 UniProtKB/Swiss-Prot
  D3ZY00 UniProtKB/Swiss-Prot
  D4ADV4 UniProtKB/Swiss-Prot
  J7FMV4 UniProtKB/Swiss-Prot
  J7FPF5 UniProtKB/Swiss-Prot
  J7FRI2 UniProtKB/Swiss-Prot
  J7FTX0 UniProtKB/Swiss-Prot
  Q6PU70 UniProtKB/Swiss-Prot
  Q6PU71 UniProtKB/Swiss-Prot
  Q6PU72 UniProtKB/Swiss-Prot
  Q6PU73 UniProtKB/Swiss-Prot
  Q6PU74 UniProtKB/Swiss-Prot
  Q80ZA6 UniProtKB/Swiss-Prot
  Z4YP24 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-09 Slc4a10  solute carrier family 4 member 10  Slc4a10  solute carrier family 4, sodium bicarbonate transporter, member 10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-10-22 Slc4a10  solute carrier family 4, sodium bicarbonate transporter, member 10  Slc4a10  solute carrier family 4, sodium bicarbonate transporter-like, member 10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-02-11 Slc4a10  solute carrier family 4, sodium bicarbonate cotransporter-like, member 10      Symbol and Name status set to approved 625702 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization localizes to the plasma membrane 1302299
gene_expression expressed in spinal cord and brain 1302299