Cm94 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Cm94 (Cardiac mass QTL 94) Rattus norvegicus

Symbol: Cm94
Name: Cardiac mass QTL 94
RGD ID: 12879866
Previously known as: CakmC3QTL
Trait: heart left ventricle mass   (VT:0007031)    
Measurement Type: heart left ventricle weight to body weight ratio   (CMO:0000530)    
LOD Score: Not Available
P Value: 0.001
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2331,426,403 - 70,668,733RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0331,103,589 - 72,989,078RGD_MAPPER_PIPELINERnor_6.0
Rnor_5.0336,274,422 - 79,557,281RGD_MAPPER_PIPELINERnor_5.0
RGSC_v3.4327,762,470 - 68,832,545RGD_MAPPER_PIPELINERGSC_v3.4
Cross Type: Not Available
Strains Crossed: SS.LEW-(D3Got33-D3Chm68)/Ayd 



Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Distinct quantitative trait loci for kidney, cardiac, and aortic mass dissociated from and associated with blood pressure in Dahl congenic rats. Duong C, etal., Mamm Genome. 2006 Dec;17(12):1147-61. Epub 2006 Dec 1.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Flank 1: (D3Chm60)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2331,426,403 - 31,426,609 (+)MAPPER
Rnor_6.0331,103,589 - 31,103,794NCBI
Rnor_5.0336,274,422 - 36,274,627UniSTS
RGSC_v3.4327,762,470 - 27,762,676RGD
RGSC_v3.4327,762,471 - 27,762,676UniSTS
Celera329,695,049 - 29,695,254UniSTS
Flank 2: (D3Rat206)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2370,653,097 - 70,653,351 (+)MAPPER
mRatBN7.2370,668,481 - 70,668,733 (+)MAPPER
Rnor_6.0372,988,827 - 72,989,078NCBI
Rnor_6.0372,973,445 - 72,973,698NCBI
Rnor_5.0379,476,405 - 79,476,660NCBI
Rnor_5.0379,491,788 - 79,492,040NCBI
Rnor_5.0379,557,029 - 79,557,281NCBI
Rnor_5.0379,491,787 - 79,492,040NCBI
Rnor_5.0379,557,028 - 79,557,281NCBI
Rnor_5.0379,476,406 - 79,476,660NCBI
RGSC_v3.4368,816,911 - 68,817,165RGD
RGSC_v3.4368,832,293 - 68,832,545RGD
RGSC_v3.4368,816,912 - 68,817,165UniSTS
RGSC_v3.4368,832,294 - 68,832,545UniSTS
Celera370,005,895 - 70,006,146UniSTS
Celera369,990,614 - 69,990,867UniSTS
RGSC_v3.1368,713,283 - 68,713,537RGD
FHH x ACI Map344.9199RGD
FHH x ACI Map344.9199UniSTS
Cytogenetic Map3q24UniSTS


Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-04-28 Cm94  Cardiac mass QTL 94  Cm94  Cardiac Mass QTL 94  Name updated 68913 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 10 gender: male 1599557
qtl_general also affects cardiac mass, heart right ventricle mass, aortic mass, kidney mass and body mass, but has no effect on blood pressure 1599557
qtl_map 41 Mb 1599557
qtl_statistics_details software package used: ANOVA followed by Dunnett test in the SYSTAT 9 program 1599557
qtl_trait_method measurement method: selected males were weaned at 21 days of age then fed 2% NaCl diet starting from 35 days of age, at 14 weeks animals were decapitated, organs removed, blotted and weighed 1599557
qtl_trait_method heart was dissected into left ventricle plus septum and right ventricle 1599557