Bss72 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Bss72 (Bone structure and strength QTL 72) Rattus norvegicus

Symbol: Bss72
Name: Bone structure and strength QTL 72
RGD ID: 2313049
Also known as: Pqctf5
Trait: tibia area   (VT:1000281)    
Measurement Type: tibia midshaft cross-sectional area   (CMO:0001717)    
LOD Score: 2.6
P Value: 1.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2327,494,621 - 50,302,886RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0328,136,728 - 51,687,917RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0333,340,297 - 58,322,647RGDRnor5.0
RGSC_v3.4323,762,471 - 47,588,420RGDRGSC3.4
Cross Type: intercross
Strains Crossed: GK/KyoSwe F344/DuCrlSwe 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Vertebrate Trait
tibia area  (IDA)

Rat Strain
F344/DuCrlSwe  (IEA)
GK/KyoSwe  (IEA)

References

References - curated
1. Lagerholm S, etal., J Bone Miner Res. 2009 Jun;24(6):1066-74.
Related QTLs

Related QTL Description Reference
Bss73 maps to same region RGD:2312767
Bmd77 maps to same region RGD:2312767
Bss74 maps to same region RGD:2312767
Bmd76 maps to same region RGD:2312767


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1593416LOC690655similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)32766516727706078Rat
71061Kynukynureninase32777864627929470Rat
1359304Arhgap15Rho GTPase activating protein 1532798936828592722Rat
41176684LOC120102081small nucleolar RNA SNORA4032830634528306467Rat
41066404LOC120102110U2 spliceosomal RNA32855995628560093Rat
41126396LOC120101905uncharacterized LOC12010190532856536028568221Rat
1563393Gtdc1glycosyltransferase-like domain containing 132876666629064305Rat
41134582LOC12010154360S ribosomal protein L7a-like32880553128806969Rat
41007407LOC120102113U2 spliceosomal RNA32881327728813416Rat
11498418LOC108350367uncharacterized LOC10835036732887037328882513Rat
41165056LOC120101544uncharacterized LOC12010154432897037628991302Rat
1307272Zeb2zinc finger E-box binding homeobox 232921976529342094Rat
9273023Zeb2-as1ZEB2 antisense RNA 132934307829345943Rat
7498952LOC102548671uncharacterized LOC10254867132943454929491656Rat
9075793LOC103690391uncharacterized LOC10369039132957970029583753Rat
11373432LOC108350369uncharacterized LOC10835036932962628029676672Rat
41353600LOC120101545uncharacterized LOC12010154532974202229786773Rat
7622113LOC102548934uncharacterized LOC10254893432999381829998722Rat
41041303LOC120102076small nucleolar RNA SNORA1733052038230520498Rat
2322483LOC100360268hypothetical LOC10036026833076880130770318Rat
41087157LOC120102072small nucleolar RNA SNORA1733081550330815603Rat
2323086LOC100359959DEAD (Asp-Glu-Ala-Asp) box polypeptide 1833120713731210520Rat
11429489LOC108350370uncharacterized LOC10835037033121664431228107Rat
9265290LOC103691783transcription elongation factor B polypeptide 2 pseudogene33125526531255970Rat
41126518LOC120101546uncharacterized LOC12010154633134491731365067Rat
41040480LOC120102009small nucleolar RNA SNORA433136654831366647Rat
11383937LOC108350593uncharacterized LOC10835059333136701831374155Rat
41010118LOC120101488glyceraldehyde-3-phosphate dehydrogenase-like33139154631396271Rat
41304536LOC120101992U7 small nuclear RNA33142960831429669Rat
41080470LOC120102080small nucleolar RNA SNORA4033152792831528053Rat
41211519LOC120101433uncharacterized LOC12010143333174359231778599Rat
1590993LOC690840similar to ribosomal protein L3733209113732091463Rat
1334145Olr435-psolfactory receptor pseudogene 43533210782932108276Rat
1589738Max-ps1Max protein, pseudogene 133252095032521403Rat
7597606LOC102553346R3H domain-containing protein 2-like33264742532683617Rat
40982231LOC12010148960S ribosomal protein L7a-like33276042732761372Rat
11507559LOC108350372uncharacterized LOC10835037233297332732986885Rat
70911Acvr2aactivin A receptor type 2A33320496133292673Rat
735212Orc4origin recognition complex, subunit 433329084433334022Rat
9234849LOC103691784uncharacterized LOC10369178433333319233534008Rat
1562961Mbd5methyl-CpG binding domain protein 533358885433738730Rat
41403109LOC120101490uncharacterized LOC12010149033374321433748338Rat
41358771LOC120101434uncharacterized LOC12010143433378665333790312Rat
11479749LOC108350553uncharacterized LOC10835055333385559633860220Rat
1307271Epc2enhancer of polycomb homolog 233386721933967908Rat
1308539Kif5ckinesin family member 5C33403208234185597Rat
7502848LOC102556679uncharacterized LOC10255667933413506434137136Rat
1562767Lypd6bLY6/PLAUR domain containing 6B33419910134360770Rat
1303202Ns5atp4NS5A (hepatitis C virus) transactivated protein 433446571534466470Rat
1587119Lypd6LY6/PLAUR domain containing 633448722234632887Rat
11444381Trnav-aac2transfer RNA valine (anticodon AAC) 233455988934559961Rat
41239310LOC120101547fatty acid-binding protein 5-like33458594934586393Rat
1587102LOC679581hypothetical protein LOC67958133467336934674656Rat
1303272Mmadhcmetabolism of cobalamin associated D33470864934726554Rat
7691310LOC102555425uncharacterized LOC10255542533472651434736258Rat
41020350LOC120101435centrosomal protein of 19 kDa-like33489813134898840Rat
1565084LOC499796LRRGT0001233510231235150397Rat
1359690Rnd3Rho family GTPase 333557192935589283Rat
1359393Tas2r134taste receptor, type 2, member 13433607765236078641Rat
41177880LOC120101491ubiquitin-40S ribosomal protein S27a-like33625497536261863Rat
41102312LOC12010143660S ribosomal protein L29-like33631504736315697Rat
41165151LOC12010143760S ribosomal protein L28-like33636699136367397Rat
1306676Rbm43RNA binding motif protein 4333639443136404757Rat
4109660Cct8-ps2chaperonin containing Tcp1, subunit 8 (theta), pseudogene 233640919636410212Rat
41340043LOC120101492T-complex protein 1 subunit theta-like33640952636410608Rat
1311721NmiN-myc (and STAT) interactor33641560736439716Rat
1588377LOC502627similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)33646040936461527Rat
621359Tnfaip6TNF alpha induced protein 633650225036521652Rat
1562474Rif1replication timing regulatory factor 133655468936607961Rat
1311134Nebnebulin33661367736811618Rat
41372376NEWGENE_40934091transfer RNA alanine (anticodon AGC)33664813836648210Rat
40942202LOC120101548uncharacterized LOC12010154833681641136831129Rat
1563584RGD1563584similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle33683138836831996Rat
41374742LOC120101493cyclin-dependent kinase 4-like33683868736839389Rat
621327Arl5aADP-ribosylation factor like GTPase 5A33687846136903362Rat
68385Cacnb4calcium voltage-gated channel auxiliary subunit beta 433690677137169191Rat
41067155LOC120102058small nucleolar RNA SNORA1733699430236994428Rat
1311497Stam2signal transducing adaptor molecule 233718614537234810Rat
40956857NEWGENE_40938314transfer RNA serine (anticodon AGA)33725558437255658Rat
40998676LOC120101438NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like33726176337262065Rat
1564306RGD1564306similar to developmental pluripotency associated 533731594237316483Rat
1560248Fmnl2formin-like 233734879137624746Rat
1311401Prpf40apre-mRNA processing factor 40 homolog A33762558537689859Rat
1564819Arl6ip6ADP ribosylation factor like GTPase 6 interacting protein 633768999437720358Rat
40961022LOC120101906NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1-like33774469037745060Rat
40992840LOC120101962U6 spliceosomal RNA33776843537768539Rat
9428172Rps27a-ps7ribosomal protein S27a, pseudogene 733780272737803281Rat
9854659LOC105650978peptidylprolyl isomerase A (cyclophilin A) pseudogene33781397937814699Rat
2320490LOC100361273hypothetical LOC10036127333789684237897073Rat
1592097LOC295611similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP)33801837538025764Rat
41117082LOC120102079small nucleolar RNA SNORA4033815393638154056Rat
11472940LOC108350373uncharacterized LOC10835037333825885938310242Rat
1595512Rprmreprimo, TP53 dependent G2 arrest mediator homolog33853958138540998Rat
41261021LOC120102131U6 spliceosomal RNA33858576838585874Rat
1595484LOC680140similar to H/ACA ribonucleoprotein complex subunit 4 (Dyskerin) (Nucleolar protein family A member 4) (snoRNP protein DKC1) (Nopp140-associated protein of 57 kDa) (Nucleolar protein NAP57)33875218938753825Rat
735044Galnt13polypeptide N-acetylgalactosaminyltransferase 1333890369539560683Rat
40933123LOC120102077small nucleolar RNA SNORA1733902117039021277Rat
40977097LOC120102015small nucleolar RNA SNORA2/SNORA34 family33935167439351809Rat
41282733LOC120102089U1 spliceosomal RNA33942831239428454Rat
41385392LOC12010154928S ribosomal protein S21, mitochondrial-like33945908339459334Rat
1598165LOC679905similar to heat shock protein 1, beta33953186339534065Rat
41256231LOC120102130U6 spliceosomal RNA33962913339629239Rat
41083196LOC120101673uncharacterized LOC12010167333970322739763930Rat
11502263LOC108350374uncharacterized LOC10835037433993432739943737Rat
2958Kcnj3potassium inwardly-rectifying channel, subfamily J, member 333994489640106646Rat
2324286LOC100362672oral-facial-digital syndrome 1 gene homolog34051788940522835Rat
7571468LOC102552919glyceraldehyde-3-phosphate dehydrogenase-like34070575640706713Rat
41270589LOC120101439uncharacterized LOC12010143934108407641091751Rat
41386871LOC1201020405S ribosomal RNA34127416641274284Rat
7624465LOC102552656uncharacterized LOC10255265634140397441420166Rat
41194913LOC120101939U6 spliceosomal RNA34166480541664911Rat
3202Nr4a2nuclear receptor subfamily 4, group A, member 234168984741707036Rat
11471288Trnaa-cgc1transfer RNA alanine (anticodon CGC) 134176222741762298Rat
11377829Trnag-gcc1transfer RNA glycine (anticodon GCC) 134176254441762614Rat
2726Gpd2glycerol-3-phosphate dehydrogenase 234180055241937729Rat
1589694LOC366056similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)34196962741994850Rat
41263037LOC120101440uncharacterized LOC12010144034209700342112153Rat
6487629LOC100912299zinc finger protein 532-like34253559342539695Rat
620361Galnt5polypeptide N-acetylgalactosaminyltransferase 534257362242619881Rat
1308367Ermnermin34262816042633816Rat
1307990Cytipcytohesin 1 interacting protein34269805842774955Rat
7739841LOC102555754uncharacterized LOC10255575434273588542743489Rat
621789Acvr1cactivin A receptor type 1C34281549042892423Rat
620200Acvr1activin A receptor type 134297855843097892Rat
7554908LOC102555913uncharacterized LOC10255591334309817143101848Rat
1589693Gapdh-ps1glyceraldehyde-3-phosphate dehydrogenase, pseudogene 134321236343214261Rat
7671946LOC102556145uncharacterized LOC10255614534325161443259310Rat
1308188Upp2uridine phosphorylase 234327304843317417Rat
1561169Ccdc148coiled-coil domain containing 14834335688543631999Rat
40947203LOC120101551uncharacterized LOC12010155134361676943622513Rat
41258230LOC120101550basic proline-rich protein-like34363026743632662Rat
1307840Pkp4plakophilin 434363236443835834Rat
41094759LOC12010167440S ribosomal protein S14-like34387634543876799Rat
9190663LOC103691811dynein light chain roadblock-type 1 pseudogene34388464343885168Rat
1309610Dapl1death associated protein-like 134396099343980940Rat
41255996LOC120101955U6 spliceosomal RNA34404418944044292Rat
1302949Tanc1tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 134409938744335478Rat
1359296Wdsub1WD repeat, sterile alpha motif and U-box domain containing 134434041544370890Rat
11422397LOC108350580uncharacterized LOC10835058034437592444379414Rat
1309801Baz2bbromodomain adjacent to zinc finger domain, 2B34438428244681619Rat
2324571LOC100361645LRRGT00075-like34458106844630051Rat
7716591LOC102551618ADP-ribosylation factor 4-like34462585044630139Rat
41047996LOC120101940U6 spliceosomal RNA34466084744660953Rat
1308993Marchf7membrane associated ring-CH-type finger 734468022944720172Rat
41254171LOC120101908uncharacterized LOC12010190834470164544705078Rat
1307606Cd302CD302 molecule34472232444756045Rat
7489036Mir6216microRNA 621634475686144756938Rat
41332538LOC120101907uncharacterized LOC12010190734476111544773503Rat
1565962Ly75lymphocyte antigen 7534476470244852219Rat
1309777Pla2r1phospholipase A2 receptor 134488394345013793Rat
1303119Itgb6integrin subunit beta 634504629545170532Rat
41106923LOC120102123U4 spliceosomal RNA34513767345137755Rat
11446749LOC108350379uncharacterized LOC10835037934514411645149094Rat
1307777Rbms1RNA binding motif, single stranded interacting protein 134519582845420406Rat
1594533LOC311067similar to proteasome 26S non-ATPase subunit 834545612445469819Rat
11391174LOC108352564uncharacterized LOC10835256434566369645700941Rat
11401909LOC108352563uncharacterized LOC10835256334571752245752406Rat
41258419LOC120102049small nucleolar RNA SNORA1734579319345793322Rat
41124612LOC120101552uncharacterized LOC12010155234605991446066272Rat
628859TankTRAF family member-associated NFKB activator34611425346190270Rat
1594532Psmd14proteasome 26S subunit, non-ATPase 1434625433846347076Rat
9112027LOC103691831cation-dependent mannose-6-phosphate receptor pseudogene34627299746287040Rat
1591773Tbr1T-box brain transcription factor 134635023746368397Rat
41179729LOC120101952U6 spliceosomal RNA34643474946434854Rat
41018897LOC12010155360S ribosomal protein L9-like34647779646480228Rat
631407Slc4a10solute carrier family 4 member 1034666507646959088Rat
2515Dpp4dipeptidylpeptidase 434696224347043870Rat
41063319LOC120101554uncharacterized LOC12010155434707772347101724Rat
9363799LOC103691814uncharacterized LOC10369181434709350047096631Rat
2668Gcgglucagon34711391447122929Rat
621253Fapfibroblast activation protein, alpha34713882347207671Rat
1560496Ifih1interferon induced with helicase C domain 134722898047275403Rat
1306589Gcagrancalcin34729732047328581Rat
7530968LOC102548992leucine-rich repeat protein SHOC-2-like34730189447305302Rat
621112Kcnh7potassium voltage-gated channel subfamily H member 734732933847822122Rat
41098018LOC120102053small nucleolar RNA SNORA1734744325747443380Rat
41176411LOC120101555uncharacterized LOC12010155534775002347778195Rat
11432617LOC108350383uncharacterized LOC10835038334782143847837682Rat
1308174Fignfidgetin, microtubule severing factor34863751048760772Rat
41217695LOC120101556uncharacterized LOC12010155634911070749143091Rat
1598030LOC681242hypothetical protein LOC68124234926662949267219Rat
61869Grb14growth factor receptor bound protein 1434956821049683805Rat
41043121LOC120102125U4 spliceosomal RNA34966123749661394Rat
6492288LOC100911508uncharacterized LOC10091150834973789049746043Rat
1308954Cobll1cordon-bleu WH2 repeat protein-like 134975326049915168Rat
41113803LOC120101557uncharacterized LOC12010155734978621349795843Rat
41083239LOC120101991U7 small nuclear RNA34982031849820381Rat
41244250LOC12010145840S ribosomal protein S11-like34987113849907924Rat
1306005Slc38a11solute carrier family 38, member 1134998711950033615Rat
41403016LOC120102041small nucleolar RNA SNORA1735005387150054023Rat
41148402LOC120102035small nucleolar RNA SNORA4835009309950093233Rat
3635Scn3asodium voltage-gated channel alpha subunit 335014641150258119Rat
3632Scn2asodium voltage-gated channel alpha subunit 235030278150437504Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10625D3Mgh2013034711353147113655Ratregion
10678D3Mgh2118234187457841874764Ratregion
11260D3Mit830935030267950302886Ratregion
33862D3Mit924733035677330357018Ratregion
34336D3Mgh714133945463739454780Ratregion
36047D3Rat4614733684746636847613Ratregion
37282D3Rat10317234539071445390886Ratregion
37282D3Rat10317234539071445390751Ratregion
37394D3Rat12322034480510444805331Ratregion
37510D3Rat10022133819223338192458Ratregion
37588D3Rat18917733871036538710544Ratregion
37010D3Rat4916032749462127494778Ratregion
36472D3Rat4413134418827844188411Ratregion
34927D3Rat19017533238565332385832Ratregion
35745D3Rat4813032946323529463355Ratregion
38148D3Rat8217233323078833230976Ratregion
38346D3Rat9819933370334733703538Ratregion
38552D3Rat8022733552842835528639Ratregion
38646D3Rat11720332901749029017683Ratregion
38652D3Rat11820033750766037507860Ratregion
40122D3Rat18614934365019843650351Ratregion
40362D3Rat18716234419364344193805Ratregion
38818D3Rat8311034539162145391731Ratregion
38882D3Rat8914733582336035823507Ratregion
38904D3Rat12221834234325842343454Ratregion
39034D3Rat11314534724284247242983Ratregion
39050D3Rat13024934723321147233430Ratregion
39494D3Rat18420534727045547270670Ratregion
42643D3Rat27420034445632444456527Ratregion
42644D3Rat27314934659640246596549Ratregion
41780D3Rat22714734382736443827511Ratregion
41842D3Rat22824933855024938550487Ratregion
41908D3Rat27522434408420044084415Ratregion
44552D9Wox2113634175726141757340Ratregion
43627D3Got2320733584981235850019Ratregion
43628D3Got2512933496716834967297Ratregion
43629D3Got2727433540087735401151Ratregion
43630D3Got2421033530572735305935Ratregion
43631D3Got3014833835378538353831Ratregion
43631D3Got3014833835368538354081Ratregion
43631D3Got3014833835368538353831Ratregion
43632D3Got3122533790353937903764Ratregion
43634D3Got3318534776986247770067Ratregion
60800D3Wox215234916291149163071Ratregion
60801D3Wox310033117232031172424Ratregion
60386D3Got1829132794445927944750Ratregion
60389D3Got2112732775715227757279Ratregion
60390D3Got2213533410549734105633Ratregion
60391D3Got2615133362564633625797Ratregion
60392D3Got2819533298503532985232Ratregion
60393D3Got2920933568974835689957Ratregion
625833D3Got17616333853930338539466Ratregion
727995D3Chm6125033120619931206451Ratregion
727998D3Chm1122732920940029209628Ratregion
727999D3Chm1021434617489446175108Ratregion
728001D3Chm5829632859654628596842Ratregion
728002D3Chm7621533172899331729208Ratregion
728004D3Chm1215134627369846273849Ratregion
728013D3Chm2519233022278930222981Ratregion
728014D3Chm5120834170074041700952Ratregion
728019D3Chm823033167512931675359Ratregion
728022D3Chm2221134813530148135514Ratregion
728024D3Chm5722332844167328441896Ratregion
728029D3Chm7222034187454041874764Ratregion
728032D3Chm7924034383707443837310Ratregion
728033D3Chm5423534499193844992173Ratregion
728036D3Chm6020633142640331426609Ratregion
728037D3Chm5024834162056341620811Ratregion
66569D18Mco120534370636643706533Ratregion
67342D3Arb1710134343142443431527Ratregion
1630651D3Wox3834956834549568455Ratregion
1631692D3Got27425632916276629163022Ratregion
1631732D3Wox3014134169071041690851Ratregion
1638626D3Got29924834567015045670394Ratregion
1639273D3Got20717334727788747278058Ratregion
1641001D3Got30829334323163843231926Ratregion
1641079D3Got30915334525525245255402Ratregion
1641120D3Got20517133355159133551747Ratregion
1633093D3Got25914632879347828793621Ratregion
1633400D3Got20615833419786434198024Ratregion
1639834D3Got30717134736436647364545Ratregion
1640570D3Got29619132972021329720404Ratregion
1635483D3Got24519334328079643280989Ratregion
1638291D3Got26715134421274944212900Ratregion
1638355D3Got2049033380161533801705Ratregion
1633847D3Got24412634451633744516463Ratregion
1633953D3Got27616534512357845123743Ratregion
1634541D3Got25613834185298941853127Ratregion
7192480Gcg16234711791147118073Ratregion
7192159Gcg20134711368947113890Ratregion
5036312Gcg12634711620747116333Ratregion
5036615AU04860422334627178346272005Ratregion
5037193RH8086417034519856345198733Ratregion
5037203RH9816124132926441329264654Ratregion
5037221AU02225522034868690548687125Ratregion
5035685SHGC-3509214832930226029302408Ratregion
5028677RH8087215734519856345198720Ratregion
5026126RH13101221333698195336982166Ratregion
5026144RH13108122032876672328766942Ratregion
5034319AA85978020633688041936880625Ratregion
5026338RH13182321134732918247329393Ratregion
5028971RH14302027133557211435572385Ratregion
5031846AU04696112932907968629079815Ratregion
5029101RH14352810034634681246346912Ratregion
5026874RH13385820634381849543819732Ratregion
5032247AU01618114133660331636603457Ratregion
5035066STS-Z417459433625768336257777Ratregion
5035234BM38502517834183317541833353Ratregion
5030181BF40134914734303790143038048Ratregion
5033143RH13775716734374984943750016Ratregion
5033341RH13847716132834561128345772Ratregion
5033493RH13903312533954205839542183Ratregion
5033623RH13950318034732937147329551Ratregion
5028396AI31496722933470881134709040Ratregion
5055109RH14361112434713885047138974Ratregion
5051170RH13448018833306197333062160Ratregion
5053553RH14271511633659210936592225Ratregion
5053705RH14280321433659311036593324Ratregion
5051683RH9459713735014832050148457Ratregion
5053829RH14287415033557873935578889Ratregion
5054457RH14323512233662689136627013Ratregion
5055735RH14397212833853967438539802Ratregion
5056345RH14432511234438514044385252Ratregion
5055293RH14371811934433281044332929Ratregion
5052823RH14229415134711397847114129Ratregion
5052879RH14232719233470888734709079Ratregion
5052999RH14239619232921492229215115Ratregion
5053009RH14240120033762439537624595Ratregion
5058426BE09600517433416898534169159Ratregion
5057660BF3924329334306293143063024Ratregion
5053655RH14277418833418258634182774Ratregion
5054031RH14299028132922607329226354Ratregion
5052751RH14225119634193736041937556Ratregion
5052791RH14227516133418515634185317Ratregion
5053057RH14242920934010581240106021Ratregion
5044066RH13039018434433273344332917Ratregion
5045458RH13118918534545587145456065Ratregion
5041784RH12905716234383566843835830Ratregion
5047480RH13235220233687519236875394Ratregion
5048850RH13314218334491780044917982Ratregion
5047912RH13260020034281573742815937Ratregion
5046892RH13201518833639457036394758Ratregion
5048104RH13271021732936646429366681Ratregion
5049676RH13361718433762971037629894Ratregion
5049708RH13363518034975329249753472Ratregion
5048436RH13290219134193611041936300Ratregion
5040470RH12830219833557134835571546Ratregion
5042386RH12940419434495720744957401Ratregion
5042672RH12957521933690684936907068Ratregion
5042760RH12962919134274324142743432Ratregion
5040994RH12860218234695863146958813Ratregion
5043158RH12986521734152619341526401Ratregion
5072560RH13692020133718630237186503Ratregion
5072208RH13671516134476477444764935Ratregion
5075414RH13858019032936000229360192Ratregion
5074246RH13790618634968477149684957Ratregion
5074448RH13802313532939263029392765Ratregion
5074566RH13809113034169061941690749Ratregion
5074604RH13811212634298266042982786Ratregion
5075014RH13834916033687689536877055Ratregion
5080686RH14172322033660321836603438Ratregion
5075052RH13837115433639337236393525Ratregion
5079380RH14096219534696141646961611Ratregion
5076222RH13905014334438452644384669Ratregion
5077252RH13964920135019717450197375Ratregion
5077832RH13998522034269898242699202Ratregion
5077840RH13999016333660370736603870Ratregion
5076362RH13913112233557860635578728Ratregion
5077592RH13984519833000215930002357Ratregion
5079778RH14119718332933731829337499Ratregion
5079966RH14130520133688248036882681Ratregion
5078826RH14057420033274426332744463Ratregion
5079184RH14078418533762919637629381Ratregion
5073256RH13733120434472239544722600Ratregion
5078790RH14055319832785986027860058Ratregion
5071204RH13494819034722864647228836Ratregion
5071948RH13537720034495340844953608Ratregion
5071322RH13501518033660774236607922Ratregion
5073672RH13757212332922846429228587Ratregion
5071784RH13528220434982036649820570Ratregion
5063460BI30183816132953729429537455Ratregion
5065044BE10899015032921613729216287Ratregion
5066846AU04811618933806611038066295Ratregion
5067002AU04802320734431673944316948Ratregion
5067458AU04773122434765782947658067Ratregion
5068044AU04738128333025325630253481Ratregion
5070334AI50528611234956847749568589Ratregion
5069734AU04630617134106563841065809Ratregion
5070436AI46173612833762787137627999Ratregion
5070518D2Ertd694e20233396683633967038Ratregion
5063550BE10777915533557003835570193Ratregion
5065984BE11640015133497072034970871Ratregion
5063778AW53515019534491349344913688Ratregion
5065382BE11529415033463255134632701Ratregion
5065788BE10986616834187717341877341Ratregion
5061482BE11186121332928368329283896Ratregion
5087084BQ19288819834722782447228022Ratregion
5087976Kcnj318734010615540106342Ratregion
5083029BF39069315734283474942834906Ratregion
5083399BF39106316133691195336912114Ratregion
5089553AU04922320934438338944383598Ratregion
5083709AI17994119833762439737624595Ratregion
5089699AU04931015634271616742716323Ratregion
5090079AU04953721333775757937757792Ratregion
5084970AA80033016034460252444602688Ratregion
5088201AU04842717234981200049812170Ratregion
5088201AU04842717234981190649812170Ratregion
5090843AU04999622534992821449928435Ratregion
5088327AU04850323332802726528027502Ratregion
5080970RH14188821733430757734307794Ratregion
5090359AU04970422534569547945695704Ratregion
5088837AU04879923133314295633143187Ratregion
5090187AU04960221232812860828128822Ratregion
5086386AW52980016234991301149913173Ratregion
5086679BM38737420333329175533291958Ratregion
5081919BE11875515033978326739783417Ratregion
5081931BE11878215634286076742860923Ratregion
5085966BQ20361415035011133250111482Ratregion
5502922Prpf40a73033762925437629984Ratregion
5502973Nr4a27934169141541691642Ratregion
5507555D11S256910433544740035447504Ratregion
5503684FIGN__672359534864362048644215Ratregion
5505937Acvr2a14233320543933205581Ratregion
5499741UniSTS:23439214733769062337690770Ratregion
5499687Acvr18334297980942980549Ratregion
5500987PMC109903P2034169161141692285Ratregion
5502082MARC_31635-31636:1045776384:135133328919633289547Ratregion
5499691Acvr2033328208633283655Ratregion
5502786DPP420034696411146964311Ratregion
5503190ksks38827133328923733289508Ratregion
5500571RH13603320234519820545198407Ratregion
5501063PMC133732P146133410682134107282Ratregion
5501904MARC_17149-17150:1028234160:136234459259544592957Ratregion
5501942MARC_17905-17906:1025019334:1033328802833289310Ratregion
Position Markers

Flank 1: (D3Rat49)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2327,494,621 - 27,494,778 (+)MAPPER
Rnor_6.0328,136,728 - 28,136,884NCBI
Rnor_5.0333,340,297 - 33,340,453UniSTS
RGSC_v3.4323,762,471 - 23,762,628RGD
RGSC_v3.4323,762,472 - 23,762,628UniSTS
RGSC_v3.1323,658,844 - 23,659,000RGD
Celera325,815,457 - 25,815,613UniSTS
RH 3.4 Map3295.7UniSTS
RH 3.4 Map3295.7RGD
SHRSP x BN Map312.0598UniSTS
SHRSP x BN Map312.0598RGD
Flank 2: (D3Mit8)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2350,302,679 - 50,302,886 (+)MAPPER
Rnor_6.0351,687,711 - 51,687,917NCBI
Rnor_5.0358,322,441 - 58,322,647UniSTS
RGSC_v3.4347,588,214 - 47,588,420UniSTS
RGSC_v3.1347,484,585 - 47,484,792RGD
Celera349,895,844 - 49,896,050UniSTS
RH 3.4 Map3615.3RGD
RH 3.4 Map3615.3UniSTS
SHRSP x BN Map335.0198UniSTS
SHRSP x BN Map335.0198RGD
FHH x ACI Map336.02RGD
Cytogenetic Map3q24UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145428441896Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32419245527494778Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32419245527494778Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32419245527494778Rat
1298073Cm13Cardiac mass QTL 132.5heart mass (VT:0007028)heart wet weight (CMO:0000069)32501391138192233Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)32749462144188411Rat
2313049Bss72Bone structure and strength QTL 722.60.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2313076Bss74Bone structure and strength QTL 7420.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)32749462150302886Rat
2313079Bss73Bone structure and strength QTL 731.5tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)32749462150302886Rat
2313101Bmd76Bone mineral density QTL 763.60.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)32749462150302886Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32824968773249687Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32824968773249687Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32824968773249687Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32824968773249687Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32846857173468571Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33068464275684642Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33068464275684642Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33142640370668733Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33142640370668733Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33142640370668733Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33142640370668733Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33142640370668733Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33142640370668733Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33370334761017857Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
10450852Stl33Serum triglyceride level QTL 333.40.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)33819223350749747Rat
10450816Scl75Serum cholesterol level QTL 754.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
10450813Scl74Serum cholesterol level QTL 745.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
4889975Bmd81Bone mineral density QTL 814.3tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)33871036550302886Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)33945463753296578Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)33945463762951183Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general measurement method: in the last 3 months modified fat-enriched chow was given; animals were killed at 215 days of age; cortical diaphyseal bone was measured and cortical CSA (mm2) determined by pQCT (peripheral quantitative computed tomography) 2312767
qtl_general number of animals used: 98 females 2312767
qtl_general software used:one-way ANOVA and MAP MANAGER/QTX 2312767
qtl_general lineage: 2 seperate F2 intercrosses were generated one from grandmaternal GK and grandpaternal F344 other from grandmaternal F344 and grandpaternal GK 2312767