Scl70 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Scl70 (Serum cholesterol level QTL 70) Rattus norvegicus

Symbol: Scl70
Name: Serum cholesterol level QTL 70
RGD ID: 10450804
Previously known as: f12-C (v. small LDL)
Trait: blood LDL cholesterol amount   (VT:0000181)    
Measurement Type: blood low density lipoprotein cholesterol level   (CMO:0000053)    
LOD Score: 4.7
P Value: 0.001
Variance: 59.0
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2320,714,090 - 65,714,090RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0321,223,803 - 66,223,803RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0326,468,864 - 30,463,421RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4316,685,411 - 20,828,959RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: SHR.BN-(D8Mit5-D8Mgh6)/Ipcv BXH2/Cub 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Genomic determinants of triglyceride and cholesterol distribution into lipoprotein fractions in the rat. Hodulova M, etal., PLoS One. 2014 Oct 8;9(10):e109983. doi: 10.1371/journal.pone.0109983. eCollection 2014.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1332944Or1l4olfactory receptor family 1 subfamily L member 432076712920768064Rat
1333332Or1af1olfactory receptor family 1 subfamily AF member 132078454520785474Rat
41129592LOC120101432olfactory receptor 1G1-like32080765020808705Rat
1334355Olr431-psolfactory receptor pseudogene 43132081191620812126Rat
1584028LOC690140similar to olfactory receptor Olr137432083661620837548Rat
1332729Olr433-psolfactory receptor pseudogene 43332084156320841791Rat
1333139Or5c1olfactory receptor family 5 subfamily C member 132086229720863280Rat
1584015Pdcl1-ps1phosducin-like 1, pseudogene 132087269120881151Rat
1589698Nme2-ps6NME/NM23 nucleoside diphosphate kinase 2, pseudogene 632088106320883655Rat
1588379Rrs1-ps10ribosome biogenesis regulator 1 homolog, pseudogene 1032093932120942374Rat
41003160Elob-ps11elongin B, pseduogene 1132098648820987742Rat
41209010Elob-ps7elongin B, pseduogene 732099050420992516Rat
1582869Elob-ps14elongin B, pseduogene 1432099505620995790Rat
41200826Elob-ps9elongin B, pseduogene 932099870320999415Rat
41266536Elob-ps3elongin B, pseduogene 332100233621003559Rat
1590958LOC690876similar to transcription elongation factor B (SIII), polypeptide 232100647021007502Rat
1588382Elob-ps8elongin B, pseduogene 832101726421018340Rat
41101549Elob-ps13elongin B, pseduogene 1332102182521022305Rat
40987625Elob-ps15elongin B, pseduogene 1532102519421026182Rat
41185658Elob-ps5elongin B, pseduogene 532102914221030159Rat
6493667LOC100911251disks large homolog 5-like32106224721072153Rat
1591934Klf5-ps2Kruppel-like factor 5, pseudogene 232107191521073656Rat
1582840Rrs1-ps1ribosome biogenesis regulator 1 homolog, pseudogene 132108898921090611Rat
11420073LOC108350364uncharacterized LOC10835036432109127421095976Rat
41001645LOC120101901uncharacterized LOC12010190132109599121099779Rat
621135Pdclphosducin like32111016521119763Rat
7654995Nme2-ps2NME/NM23 nucleoside diphosphate kinase 2, pseudogene 232111942321122807Rat
1304833Rc3h2ring finger and CCCH-type domains 232112153121186711Rat
41133334Snord90small nucleolar RNA, C/D box 9032116296821163078Rat
41083260LOC120101486uncharacterized LOC12010148632118503821192945Rat
1306007Zbtb6zinc finger and BTB domain containing 632118916021207561Rat
1308561Zbtb26zinc finger and BTB domain containing 2632119531921207925Rat
11425388LOC108350365uncharacterized LOC10835036532119941021205009Rat
1304691Rabgap1RAB GTPase activating protein 132120801221326013Rat
41011374LOC120101900uncharacterized LOC12010190032124488021283629Rat
1586383Gpr21G protein-coupled receptor 2132127500721279008Rat
620673Strbpspermatid perinuclear RNA binding protein32132831021467753Rat
41374491LOC120102124U4 spliceosomal RNA32142035421420481Rat
1561137RGD1561137similar to 40S ribosomal protein S1632149415521494684Rat
41026169LOC120101537uncharacterized LOC12010153732152771321534482Rat
41016805LOC120101903uncharacterized LOC12010190332154038321543108Rat
1309368Crb2crumbs cell polarity complex component 232154213821564876Rat
41337030LOC120101933U6 spliceosomal RNA32155103821551144Rat
40941630LOC120101945U6 spliceosomal RNA32155175421551860Rat
1307927Dennd1aDENN domain containing 1A32156474922052057Rat
41195976LOC120101902uncharacterized LOC12010190232186943921878730Rat
71076Lhx2LIM homeobox 232211361922143909Rat
11473570LOC108350366uncharacterized LOC10835036632221469422257038Rat
40939602LOC120101538uncharacterized LOC12010153832224525122257178Rat
727779Nek6NIMA-related kinase 632228426922356302Rat
621093Psmb7proteasome 20S subunit beta 732235777722417748Rat
1596103Alg11-ps3ALG11, alpha-1,2-mannosyltransferase, pseudogene 332242836922429945Rat
2318734Rps20-ps10ribosomal protein S20, pseudogene 1032243024722430764Rat
68350Nr5a1nuclear receptor subfamily 5, group A, member 132246478622486328Rat
1564740Nr6a1nuclear receptor subfamily 6, group A, member 132249510922683132Rat
7623233LOC102554311uncharacterized LOC10255431132258587022613734Rat
2325335Mir181a2microRNA 181a-232261584522615961Rat
2325454Mir181b2microRNA 181b-232261694822617035Rat
41296457LOC120101539uncharacterized LOC12010153932261895022632367Rat
1311651Olfml2aolfactomedin-like 2A32268856222717745Rat
7749459LOC102554600uncharacterized LOC10255460032271624422731175Rat
41157828LOC120102092small nucleolar RNA SNORA7932273807222738216Rat
1562587Wdr38WD repeat domain 3832275014522753441Rat
1303007Rpl35ribosomal protein L3532275325522756217Rat
1308867Arpc5lactin related protein 2/3 complex, subunit 5-like32275871022767520Rat
1311305Golga1golgin A132276569022812637Rat
7707315LOC102546322COPII coat assembly protein sec16-like32281271922819111Rat
1594720Scaisuppressor of cancer cell invasion32281328322925364Rat
708460Ppp6cprotein phosphatase 6, catalytic subunit32292981622962123Rat
1589697Rpl10-ps2ribosomal protein L10, pseudogene 232303352923034161Rat
41241606LOC120102026small nucleolar RNA SNORA4832304743523047574Rat
7741314N4bp1-ps1Nedd4 binding protein 1, pseudogene 132315047223151651Rat
1589739Vdac2-ps3voltage-dependent anion channel 2, pseudogene 332321552623222603Rat
41199927Wbp1l-ps3WW domain binding protein 1-like, pseudogene 332350067223506356Rat
2323145Sp3-ps1Sp3 transcription factor, pseudogene 132360318123604872Rat
41256826LOC120101994U7 small nuclear RNA32362397123624033Rat
40992520LOC120101997U7 small nuclear RNA32362404923624108Rat
9093487LOC10369180540S ribosomal protein S14 pseudogene32371140923711911Rat
41337682LOC120102038small nucleolar RNA SNORA4832392516823925311Rat
2318320LOC10036236640S ribosomal protein S17-like32401982024020305Rat
11496785LOC10835055160S ribosomal protein L12 pseudogene32424981424250522Rat
41069797LOC120102003small nucleolar RNA SNORA7032455500324555138Rat
1561736RGD1561736similar to ribosomal protein L1032455508024555585Rat
1306160Lrp1bLDL receptor related protein 1B32459430226715037Rat
41034676Actg1-ps7actin, gamma 1, pseudogene 732528326925290132Rat
41092566LOC120101541uncharacterized LOC12010154132689036826909301Rat
41393928LOC120102048small nucleolar RNA SNORA1732689649926896629Rat
41001697Rpl7a-ps16ribosomal protein L7a, pseudogene 1632713001727164425Rat
41260220LOC120101542MLV-related proviral Env polyprotein-like32733382827335839Rat
1593416Hmgb1-ps27high-mobility group box 1, pseudogene 2732766516727706078Rat
71061Kynukynureninase32777864627929470Rat
1359304Arhgap15Rho GTPase activating protein 1532798936828592722Rat
41176684LOC120102081small nucleolar RNA SNORA4032830634528306467Rat
41066404LOC120102110U2 spliceosomal RNA32855995628560093Rat
41126396LOC120101905uncharacterized LOC12010190532856536028568221Rat
1563393Gtdc1glycosyltransferase-like domain containing 132876666629064305Rat
41134582Rpl7a-ps18ribosomal protein L7a, pseudogene 1832880553128806969Rat
41007407Rnu2-18RNA, U2 small nuclear 1832881327728813416Rat
11498418LOC108350367uncharacterized LOC10835036732887037328882513Rat
41165056LOC120101544uncharacterized LOC12010154432897037628991302Rat
1307272Zeb2zinc finger E-box binding homeobox 232921976529342094Rat
9273023Zeb2-as1ZEB2 antisense RNA 132934307829345943Rat
7498952LOC102548671uncharacterized LOC10254867132943454929491656Rat
9075793LOC103690391uncharacterized LOC10369039132957970029583753Rat
11373432LOC108350369uncharacterized LOC10835036932962628029676672Rat
41353600LOC120101545uncharacterized LOC12010154532974202229786773Rat
7622113LOC102548934uncharacterized LOC10254893432999381829998722Rat
41041303LOC120102076small nucleolar RNA SNORA1733052038230520498Rat
2322483Traf7-ps2TNF receptor associated factor 7, pseudogene 233076880130770318Rat
41087157LOC120102072small nucleolar RNA SNORA1733081550330815603Rat
2323086Ddx18-ps2DEAD-box helicase 18, pseudogene 233120713731210520Rat
11429489LOC108350370uncharacterized LOC10835037033121664431228107Rat
9265290LOC103691783transcription elongation factor B polypeptide 2 pseudogene33125526531255970Rat
41126518LOC120101546uncharacterized LOC12010154633134491731365067Rat
41040480LOC120102009small nucleolar RNA SNORA433136654831366647Rat
11383937LOC108350593uncharacterized LOC10835059333136701831374155Rat
41010118Gapdh-ps63Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 6333139154631396271Rat
41304536LOC120101992U7 small nuclear RNA33142960831429669Rat
41080470LOC120102080small nucleolar RNA SNORA4033152792831528053Rat
41211519LOC120101433uncharacterized LOC12010143333174359231778599Rat
1590993LOC690840similar to ribosomal protein L3733209113732091463Rat
1334145Or6c247-ps1olfactory receptor family 6 subfamily C member 247, pseudogene 133210782932108276Rat
1589738Max-ps1MYC associated factor X, pseudogene 133252095032521403Rat
7597606R3hdm2-ps1R3H domain containing 2, pseudogene 133264742532683617Rat
40982231Rpl7a-ps17ribosomal protein L7a, pseudogene 1733276042732761372Rat
11507559LOC108350372uncharacterized LOC10835037233297332732986885Rat
70911Acvr2aactivin A receptor type 2A33320496133292673Rat
735212Orc4origin recognition complex, subunit 433329084433334022Rat
9234849LOC103691784uncharacterized LOC10369178433333319233534008Rat
1562961Mbd5methyl-CpG binding domain protein 533358885433738730Rat
41403109LOC120101490uncharacterized LOC12010149033374321433748338Rat
41358771LOC120101434uncharacterized LOC12010143433378665333790312Rat
11479749LOC108350553uncharacterized LOC10835055333385559633860220Rat
1307271Epc2enhancer of polycomb homolog 233386721933967908Rat
1308539Kif5ckinesin family member 5C33403208234185597Rat
7502848LOC102556679uncharacterized LOC10255667933413506434137136Rat
1562767Lypd6bLy6/Plaur domain containing 6B33419910134360770Rat
1303202Ns5atp4-ps3NS5A transactivated protein 4, pseudogene 333446571534466470Rat
1587119Lypd6Ly6/Plaur domain containing 633448722234632887Rat
11444381Trnav-aac2transfer RNA valine (anticodon AAC) 233455988934559961Rat
41239310LOC120101547fatty acid-binding protein 5-like33458594934586393Rat
1587102Hnrnpa1-ps20heterogeneous nuclear ribonucleoprotein A1, pseudogene 2033467336934674656Rat
1303272Mmadhcmetabolism of cobalamin associated D33470864934726554Rat
7691310LOC102555425uncharacterized LOC10255542533472651434736258Rat
41020350Cep19-ps1centrosomal protein 19, pseudogene 133489813134898840Rat
1565084LOC499796LRRGT0001233510231235150397Rat
1359690Rnd3Rho family GTPase 333557192935589283Rat
1359393Tas2r134taste receptor, type 2, member 13433607765236078641Rat
41177880LOC120101491ubiquitin-40S ribosomal protein S27a-like33625497536261863Rat
41102312Rpl29-ps11ribosomal protein L29, pseudogene 1133631504736315697Rat
41165151Rpl28-ps9ribosomal protein L28, pseudogene 933636699136367397Rat
1306676Rbm43RNA binding motif protein 4333639443136404757Rat
4109660Cct8-ps2chaperonin containing Tcp1, subunit 8 (theta), pseudogene 233640919636410212Rat
41340043Cct8-ps3chaperonin containing Tcp1, subunit 8 (theta), pseudogene 333640952636410608Rat
1311721NmiN-myc (and STAT) interactor33641560736439716Rat
1588377Ldha-ps11lactate dehydrogenase A, pseudogene 1133646040936461527Rat
621359Tnfaip6TNF alpha induced protein 633650225036521652Rat
1562474Rif1replication timing regulatory factor 133655468936607961Rat
1311134Nebnebulin33661367736811618Rat
41372376Trnaa-agc59transfer RNA alanine (anticodon AGC) 5933664813836648210Rat
40942202LOC120101548uncharacterized LOC12010154833681641136831129Rat
1563584Myl6-ps6myosin light chain 6, pseudogene 633683138836831996Rat
41374742Cdk4-ps3cyclin-dependent kinase 4, pseudogene 333683868736839389Rat
621327Arl5aADP-ribosylation factor like GTPase 5A33687846136903362Rat
68385Cacnb4calcium voltage-gated channel auxiliary subunit beta 433690677137169191Rat
41067155LOC120102058small nucleolar RNA SNORA1733699430236994428Rat
1311497Stam2signal transducing adaptor molecule 233718614537234810Rat
40956857Trnas-aga35transfer RNA serine (anticodon AGA) 3533725558437255658Rat
40998676Ndufa2-ps1NADH:ubiquinone oxidoreductase subunit A2, pseudogene 133726176337262065Rat
1564306RGD1564306similar to developmental pluripotency associated 533731594237316483Rat
1560248Fmnl2formin-like 233734879137624746Rat
1311401Prpf40apre-mRNA processing factor 40 homolog A33762558537689859Rat
1564819Arl6ip6ADP ribosylation factor like GTPase 6 interacting protein 633768999437720358Rat
40961022Ndufb1-ps2NADH:ubiquinone oxidoreductase subunit B1, pseudogene 233774469037745060Rat
40992840LOC120101962U6 spliceosomal RNA33776843537768539Rat
9428172Rps27a-ps7ribosomal protein S27a, pseudogene 733780272737803281Rat
9854659Rps27a-ps31ribosomal protein S27a, pseudogene 3133781397937814699Rat
2320490Micos10-ps2mitochondrial contact site and cristae organizing system subunit 10, pseudogene 233789684237897073Rat
1592097Hnrnpa1-ps7heterogeneous nuclear ribonucleoprotein A1, pseudogene 733801837538025764Rat
41117082LOC120102079small nucleolar RNA SNORA4033815393638154056Rat
11472940LOC108350373uncharacterized LOC10835037333825885938310242Rat
1595512Rprmreprimo, TP53 dependent G2 arrest mediator homolog33853958138540998Rat
41261021LOC120102131U6 spliceosomal RNA33858576838585874Rat
1595484Dkc1-ps2dyskerin pseudouridine synthase 1, pseudogene 233875218938753825Rat
735044Galnt13polypeptide N-acetylgalactosaminyltransferase 1333890369539560683Rat
40933123LOC120102077small nucleolar RNA SNORA1733902117039021277Rat
40977097LOC120102015small nucleolar RNA SNORA2/SNORA34 family33935167439351809Rat
41282733LOC120102089U1 spliceosomal RNA33942831239428454Rat
41385392Mrps21-ps2mitochondrial ribosomal protein S21, pseudogene 233945908339459334Rat
1598165Hsp90ab1-ps23heat shock protein 90 alpha family class B member 1, pseudogene 2333953186339534065Rat
41256231LOC120102130U6 spliceosomal RNA33962913339629239Rat
41083196LOC120101673uncharacterized LOC12010167333970322739763930Rat
11502263LOC108350374uncharacterized LOC10835037433993432739943737Rat
2958Kcnj3potassium inwardly-rectifying channel, subfamily J, member 333994489640106646Rat
2324286Ofd1-ps1Ofd1 centriole and centriolar satellite protein, pseudogene 134051788940522835Rat
7571468Gapdh-ps94Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 9434070575640706713Rat
41270589LOC120101439uncharacterized LOC12010143934108407641091751Rat
41386871LOC1201020405S ribosomal RNA34127416641274284Rat
7624465LOC102552656uncharacterized LOC10255265634140397441420166Rat
41194913Rnu6-641RNA, U6 small nuclear 64134166480541664911Rat
3202Nr4a2nuclear receptor subfamily 4, group A, member 234168984741707036Rat
11471288Trnaa-cgc1transfer RNA alanine (anticodon CGC) 134176222741762298Rat
11377829Trnag-gcc1transfer RNA glycine (anticodon GCC) 134176254441762614Rat
2726Gpd2glycerol-3-phosphate dehydrogenase 234180055241937729Rat
1589694Gapdh-ps4Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 434196962741994850Rat
41263037LOC120101440uncharacterized LOC12010144034209700342112153Rat
6487629Zfp532-ps1zinc finger protein 532, pseudogene 134253559342539695Rat
620361Galnt5polypeptide N-acetylgalactosaminyltransferase 534257362242619881Rat
1308367Ermnermin34262816042633816Rat
1307990Cytipcytohesin 1 interacting protein34269805842774955Rat
7739841LOC102555754uncharacterized LOC10255575434273588542743489Rat
621789Acvr1cactivin A receptor type 1C34281549042892423Rat
620200Acvr1activin A receptor type 134297855843097892Rat
7554908LOC102555913uncharacterized LOC10255591334309817143101848Rat
1589693Gapdh-ps1glyceraldehyde-3-phosphate dehydrogenase, pseudogene 134321236343214261Rat
7671946LOC102556145uncharacterized LOC10255614534325161443259310Rat
1308188Upp2uridine phosphorylase 234327304843317417Rat
1561169Ccdc148coiled-coil domain containing 14834335688543631999Rat
40947203LOC120101551uncharacterized LOC12010155134361676943622513Rat
41258230LOC120101550basic proline-rich protein-like34363026743632662Rat
1307840Pkp4plakophilin 434363236443835834Rat
41094759Rps14-ps3ribosomal protein S14, pseudogene 334387634543876799Rat
9190663LOC103691811dynein light chain roadblock-type 1 pseudogene34388464343885168Rat
1309610Dapl1death associated protein-like 134396099343980940Rat
41255996LOC120101955U6 spliceosomal RNA34404418944044292Rat
1302949Tanc1tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 134409938744335478Rat
1359296Wdsub1WD repeat, sterile alpha motif and U-box domain containing 134434041544370890Rat
11422397LOC108350580uncharacterized LOC10835058034437592444379414Rat
1309801Baz2bbromodomain adjacent to zinc finger domain, 2B34438428244681619Rat
2324571LOC100361645LRRGT00075-like34458106844630051Rat
7716591Arf4-ps1ADP-ribosylation factor 4, pseudogene 134462585044630139Rat
41047996Rnu6-22RNA, U6 small nuclear 2234466084744660953Rat
1308993Marchf7membrane associated ring-CH-type finger 734468022944720172Rat
41254171LOC120101908uncharacterized LOC12010190834470164544705078Rat
1307606Cd302CD302 molecule34472232444756045Rat
7489036Mir6216microRNA 621634475686144756938Rat
41332538LOC120101907uncharacterized LOC12010190734476111544773503Rat
1565962Ly75lymphocyte antigen 7534476470244852219Rat
1309777Pla2r1phospholipase A2 receptor 134488394345013793Rat
1303119Itgb6integrin subunit beta 634504629545170532Rat
41106923LOC120102123U4 spliceosomal RNA34513767345137755Rat
11446749LOC108350379uncharacterized LOC10835037934514411645149094Rat
1307777Rbms1RNA binding motif, single stranded interacting protein 134519582845420406Rat
1594533Psmd8-ps1proteasome 26S subunit, non-ATPase 8, pseudogene 134545612445469819Rat
11391174LOC108352564uncharacterized LOC10835256434566369645700941Rat
11401909LOC108352563uncharacterized LOC10835256334571752245752406Rat
41258419LOC120102049small nucleolar RNA SNORA1734579319345793322Rat
41124612LOC120101552uncharacterized LOC12010155234605991446066272Rat
628859TankTRAF family member-associated NFKB activator34611425346190270Rat
1594532Psmd14proteasome 26S subunit, non-ATPase 1434625433846347076Rat
9112027LOC103691831cation-dependent mannose-6-phosphate receptor pseudogene34627299746287040Rat
1591773Tbr1T-box brain transcription factor 134635023746368397Rat
41179729Rnu6-249RNA, U6 small nuclear 24934643474946434854Rat
41018897Rpl9-ps12ribosomal protein L9, pseudogene 1234647779646480228Rat
631407Slc4a10solute carrier family 4 member 1034666507646959088Rat
2515Dpp4dipeptidylpeptidase 434696224347043870Rat
41063319LOC120101554uncharacterized LOC12010155434707772347101724Rat
9363799LOC103691814uncharacterized LOC10369181434709350047096631Rat
2668Gcgglucagon34711391447122929Rat
621253Fapfibroblast activation protein, alpha34713882347207671Rat
1560496Ifih1interferon induced with helicase C domain 134722898047275403Rat
1306589Gcagrancalcin34729732047328581Rat
7530968Shoc2-ps1SHOC2 leucine-rich repeat scaffold protein, pseudogene 134730189447305302Rat
621112Kcnh7potassium voltage-gated channel subfamily H member 734732933847822122Rat
41098018LOC120102053small nucleolar RNA SNORA1734744325747443380Rat
41176411LOC120101555uncharacterized LOC12010155534775002347778195Rat
11432617LOC108350383uncharacterized LOC10835038334782143847837682Rat
1308174Fignfidgetin, microtubule severing factor34863751048760772Rat
41217695LOC120101556uncharacterized LOC12010155634911070749143091Rat
1598030Gatd1-ps1glutamine amidotransferase class 1 domain containing 1, pseudogene 134926662949267219Rat
61869Grb14growth factor receptor bound protein 1434956821049683805Rat
41043121LOC120102125U4 spliceosomal RNA34966123749661394Rat
6492288LOC100911508uncharacterized LOC10091150834973789049746043Rat
1308954Cobll1cordon-bleu WH2 repeat protein-like 134975326049915168Rat
41113803LOC120101557uncharacterized LOC12010155734978621349795843Rat
41083239LOC120101991U7 small nuclear RNA34982031849820381Rat
41244250Rps11-ps10ribosomal protein S11, pseudogene 1034987113849907924Rat
1306005Slc38a11solute carrier family 38, member 1134998711950033615Rat
41403016LOC120102041small nucleolar RNA SNORA1735005387150054023Rat
41148402LOC120102035small nucleolar RNA SNORA4835009309950093233Rat
3635Scn3asodium voltage-gated channel alpha subunit 335014641150258119Rat
3632Scn2asodium voltage-gated channel alpha subunit 235030278150437504Rat
41070396LOC120102075small nucleolar RNA SNORA1735049016850490295Rat
1306214Csrnp3cysteine and serine rich nuclear protein 335049837950695598Rat
1306443Galnt3polypeptide N-acetylgalactosaminyltransferase 335074250050779266Rat
11419132LOC108350555uncharacterized LOC10835055535077966950806160Rat
1565122Ttc21btetratricopeptide repeat domain 21B35086136750935782Rat
41242060Rpl7a-ps19ribosomal protein L7a, pseudogene 1935089553250896545Rat
69364Scn1asodium voltage-gated channel alpha subunit 135095279051071804Rat
11483043LOC108350387uncharacterized LOC10835038735109399351267758Rat
69368Scn9asodium voltage-gated channel alpha subunit 935114514851293342Rat
41000847Hdac1-ps18Histone deacetylase 1, pseudogene 1835127279351295197Rat
61922Scn7asodium voltage-gated channel alpha subunit 735133584151438308Rat
1560831RGD1560831similar to 40S ribosomal protein S335155968351560522Rat
41233961Rpl9-ps11ribosomal protein L9, pseudogene 1135177822951778790Rat
1583266Rps7-ps5ribosomal protein S7, pseudogene 535192430851925946Rat
7676304LOC102553976uncharacterized LOC10255397635200823752112424Rat
41307402LOC120102067small nucleolar RNA SNORA1735209327752093408Rat
1302980Xirp2xin actin-binding repeat containing 235212621352213094Rat
1311898B3galt1Beta-1,3-galactosyltransferase 135225341352826508Rat
41057891LOC120102112U2 spliceosomal RNA35269669952696861Rat
621643Stk39serine threonine kinase 3935291358353179060Rat
6491326LOC100911723uncharacterized LOC10091172335292801152929487Rat
41073245Dnajc8-ps2DnaJ heat shock protein family (Hsp40) member C8, pseudogene 235323761053242100Rat
1597699LOC685184similar to protein expressed in prostate, ovary, testis, and placenta 8 isoform 235328445453518848Rat
1564400Eif5-ps1eukaryotic translation initiation factor 5, pseudogene 135356653153569302Rat
1561599Cers6ceramide synthase 635363063653879692Rat
1589692Ybx1-ps9Y box binding protein 1, pseudogene 935389133653892682Rat
727920Nostrinnitric oxide synthase trafficking35390474653970995Rat
1307811Spc25SPC25 component of NDC80 kinetochore complex35393001353988940Rat
11401035LOC108350389glucose-6-phosphatase 2-like35399846454043357Rat
69398G6pc2glucose-6-phosphatase catalytic subunit 235399982154005539Rat
619930Abcb11ATP binding cassette subfamily B member 1135401685454112797Rat
620655Dhrs9dehydrogenase/reductase 935414783454170052Rat
68407Lrp2LDL receptor related protein 235418930554346769Rat
40992206Cfl1-ps10cofilin 1, pseudogene 1035435215454376010Rat
11408567LOC108350390uncharacterized LOC10835039035439624654402640Rat
1310718Bbs5Bardet-Biedl syndrome 535441042954431831Rat
620852Klhl41kelch-like family member 4135443429154447415Rat
1563531Fastkd1FAST kinase domains 135444971054475624Rat
620315Ppigpeptidylprolyl isomerase G35448402354512929Rat
1308818Cfap210cilia and flagella associated protein 21035452045554554677Rat
1359274Phospho2phosphatase, orphan 235455482954561990Rat
1307166Klhl23kelch-like family member 2335458078854594530Rat
620804Ssbsmall RNA binding exonuclease protection factor La35461661654626203Rat
41097145LOC120102101small nucleolar RNA U1335462478454624882Rat
1566062Mettl5methyltransferase 5, N6-adenosine35462579054638066Rat
1565257Ubr3ubiquitin protein ligase E3 component n-recognin 335464980354806779Rat
41266482Hnrnpc-ps5heterogeneous nuclear ribonucleoprotein C, pseudogene 535472476254732130Rat
1560313Myo3bmyosin IIIB35487370455226189Rat
1308499Sp5Sp5 transcription factor35527493155277733Rat
41276621LOC120101560uncharacterized LOC12010156035528528955292594Rat
41323100LOC120101561uncharacterized LOC12010156135529262955311439Rat
1563852Erich2glutamate-rich 235531099355347701Rat
2652Gad1glutamate decarboxylase 135536970455410335Rat
619911Gorasp2golgi reassembly stacking protein 235547444855503570Rat
41065835LOC120101562uncharacterized LOC12010156235550325255505088Rat
1310370Tlk1tousled-like kinase 135552055955627580Rat
1589691Fau-ps1FAU ubiquitin like and ribosomal protein S30 fusion, pseudogene 135563059055631800Rat
1565767RGD1565767similar to ribosomal protein L1535569919155700292Rat
1561059Mettl8methyltransferase 8, methylcytidine35573145355863652Rat
1565551Dcaf17DDB1 and CUL4 associated factor 1735586377655895601Rat
1305740Cybrd1cytochrome b reductase 135593487455962132Rat
11429097LOC108350392glyceraldehyde-3-phosphate dehydrogenase pseudogene35598325055993524Rat
41074405Gapdh-ps28Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 2835598717755988204Rat
620174Dync1i2dynein cytoplasmic 1 intermediate chain 235603388256085080Rat
1305181Slc25a12solute carrier family 25 member 1235609808056192188Rat
1305716Hat1histone acetyltransferase 135621734456265021Rat
40932845LOC120102107U2 spliceosomal RNA35625625256256439Rat
7498194LOC102549016uncharacterized LOC10254901635626546556279458Rat
1307413Metap1dmethionyl aminopeptidase type 1D (mitochondrial)35627947156354518Rat
11426631LOC108350393uncharacterized LOC10835039335634059956364901Rat
1309593Dlx1distal-less homeobox 135635619056360780Rat
1304853Dlx2distal-less homeobox 235637134756373230Rat
41189108LOC120101563uncharacterized LOC12010156335641797256447528Rat
7584653LOC102549214uncharacterized LOC10254921435645262356460538Rat
7549589LOC102555148uncharacterized LOC10255514835646139656468036Rat
9400923LOC103691816uncharacterized LOC10369181635648552256490015Rat
2320728Mrps36-ps2mitochondrial ribosomal protein S36, pseudogene 235655290656553216Rat
621633Itga6integrin subunit alpha 635660451256689428Rat
69427Pdk1pyruvate dehydrogenase kinase 135670582456733040Rat
621886Rapgef4Rap guanine nucleotide exchange factor 435680938857101332Rat
41102588LOC120102074small nucleolar RNA SNORA1735682530756825429Rat
41371499LOC120102014small nucleolar RNA SNORA42/SNORA80 family35696432756964460Rat
9078858LOC103695171uncharacterized LOC10369517135704225157066815Rat
1561394Map3k20mitogen-activated protein kinase kinase kinase 2035712856157289943Rat
41168553LOC120101564uncharacterized LOC12010156435712938257132860Rat
11514172LOC108350557uncharacterized LOC10835055735730679257322744Rat
1309363Cdca7cell division cycle associated 735732271857333353Rat
41345808Rps13-ps7ribosomal protein S13, pseudogene 735738340157393461Rat
11478808LOC108350396uncharacterized LOC10835039635743095657470280Rat
2323302Dctd-ps1dCMP deaminase, pseudogene 135751697257520591Rat
40939229LOC120101566uncharacterized LOC12010156635755767357573426Rat
1587670Eno1-ps1enolase 1, pseudogene 135757664357578321Rat
41347799LOC120101442uncharacterized LOC12010144235759414057602949Rat
41134704LOC120101567NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7-like35768210557684325Rat
7704882LOC102555817dynein heavy chain 17, axonemal-like35769212657699221Rat
9224218LOC103691818uncharacterized LOC10369181835771057357714304Rat
11437224LOC108350397uncharacterized LOC10835039735772031357788490Rat
41132045Jpt1-ps1Jupiter microtubule associated 1, pseudogene 135775455257756932Rat
41075360Rpl9-ps15ribosomal protein L9, pseudogene 1535777056157775849Rat
1583765Sp3Sp3 transcription factor35781185557857150Rat
9183373LOC103691820uncharacterized LOC10369182035791270257917164Rat
7612019LOC102546819uncharacterized LOC10254681935794069557992557Rat
1307982Ola1Obg-like ATPase 135796689658085955Rat
40949761Trnav-aac24transfer RNA valine (anticodon AAC) 2435807388858073969Rat
9330172LOC10369182160S ribosomal protein L27 pseudogene35808095058081356Rat
1559457Sp9Sp9 transcription factor35814682658149357Rat
1309199Cir1corepressor interacting with RBPJ, 135815941858188719Rat
11422631LOC108350582serine/arginine-rich splicing factor 3 pseudogene35818703358188641Rat
1305064Scrn3secernin 335818882058213623Rat
1309162Gpr155G protein-coupled receptor 15535821642258270350Rat
620887Wipf1WAS/WASL interacting protein family, member 135831452158416668Rat
41387376Rbx1-ps2ring-box 1, pseudogene 235843219458432513Rat
11362073LOC108350398uncharacterized LOC10835039835844657458448992Rat
69277Chrna1cholinergic receptor nicotinic alpha 1 subunit35845476358469832Rat
7606520LOC102552170uncharacterized LOC10255217035848645558510222Rat
620139Chn1chimerin 135850982258676774Rat
41236206LOC120101570uncharacterized LOC12010157035867828058682493Rat
41098957Rnu6-1136RNA, U6 small nuclear 113635868956358689673Rat
11486579Ube2s-ps4ubiquitin-conjugating enzyme E2S, pseudogene 435869707358699024Rat
621862Atf2activating transcription factor 235871832358795280Rat
41192492Rpl19-ps5ribosomal protein L19, pseudogene 535872247458723687Rat
41165060LOC120101572uncharacterized LOC12010157235879525758799419Rat
620052Atp5mc3ATP synthase membrane subunit c locus 335881053558813185Rat
9345818LOC103691823NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 pseudogene35887360558873938Rat
41178028LOC120101444uncharacterized LOC12010144435890829958910812Rat
7527047LOC102552809uncharacterized LOC10255280935912311259135627Rat
1584075G3bp2-ps1G3BP stress granule assembly factor 2, pseudogene 135936089259362560Rat
41300198LOC120102034U1 spliceosomal RNA35940764159407795Rat
40928829LOC120102032small nucleolar RNA SNORA4835940862159408764Rat
7554897Rps7-ps11ribosomal protein S7, pseudogene 1135941704159418716Rat
1312042Lnpklunapark, ER junction formation factor35941887259487029Rat
41300438LOC120101944U6 spliceosomal RNA35949095159491051Rat
2320625Rps26-ps2ribosomal protein S26, pseudogene 235949876459538211Rat
41245427LOC120101965U6 spliceosomal RNA35952174659521846Rat
1588374Ptma-ps8prothymosin alpha, pseudogene 835954774359548317Rat
1305594Evx2even-skipped homeobox 235955819759562267Rat
1308417Hoxd13homeo box D1335957064759573963Rat
1309797Hoxd12homeo box D1235957767759578798Rat
7730597Hoxd11homeobox D1135958484059587257Rat
1306511Hoxd10homeo box D1035959451659597725Rat
1582908Hoxd9homeo box D935960057559602755Rat
6489440Hoxd8homeobox D835960786459610358Rat
40944736LOC120101573uncharacterized LOC12010157335961270659615030Rat
1309690Hoxd4homeo box D435961446459634042Rat
2325397Mir10bmicroRNA 10b35962843859628546Rat
1588601Hoxd3homeo box D335963870859650282Rat
41399479LOC120101574uncharacterized LOC12010157435965499259656589Rat
1309179Hoxd1homeo box D135966562959667769Rat
1306473Mtx2metaxin 235973020659792202Rat
41329305Snrpc-ps11small nuclear ribonucleoprotein polypeptide C, pseudogene 1136014329360143801Rat
41301375LOC120101575uncharacterized LOC12010157536019413760201089Rat
41246102LOC120101576uncharacterized LOC12010157636020335160208211Rat
11498171LOC108350401uncharacterized LOC10835040136027047060298941Rat
7733574LOC102554395uncharacterized LOC10255439536037104660401138Rat
41048592LOC120101577uncharacterized LOC12010157736038444460422413Rat
7566091LOC102554564uncharacterized LOC10255456436054150060544208Rat
727807Hnrnpa3heterogeneous nuclear ribonucleoprotein A336057857460588755Rat
620360Nfe2l2NFE2 like bZIP transcription factor 236059423960621785Rat
7560679Rpl10-ps3ribosomal protein L10, pseudogene 336062407960634739Rat
41399625LOC120101578uncharacterized LOC12010157836064534560664056Rat
620364Agpsalkylglycerone phosphate synthase36074732360845831Rat
41031811Trnap-ggg5transfer RNA proline (anticodon GGG) 536075870560758779Rat
1590784Ift70bintraflagellar transport 70B36085580960858380Rat
1560121Ift70a2intraflagellar transport 70A236089919360901634Rat
2318157Ift70a1intraflagellar transport 70A136090189660905350Rat
621793Pde11aphosphodiesterase 11A36091356261297154Rat
41307015LOC120101581uncharacterized LOC12010158136091477460922918Rat
41138727LOC120101579uncharacterized LOC12010157936096379660980819Rat
41199509LOC120101580uncharacterized LOC12010158036126693661268645Rat
2452Cyctcytochrome c, testis36129009061297158Rat
1596954Anp32a-ps1acidic nuclear phosphoprotein 32 family member A, pseudogene 136129134161293039Rat
628862Rbm45RNA binding motif protein 4536130597361320950Rat
1308887Osbpl6oxysterol binding protein-like 636134377661541170Rat
1306707Prkraprotein activator of interferon induced protein kinase EIF2AK236157544761594393Rat
1587131Pjvkpejvakin36159464461605051Rat
1305293Fkbp7FKBP prolyl isomerase 736160938461623710Rat
1305244Plekha3pleckstrin homology domain containing A336162343461644649Rat
621114Ttntitin36165243261924912Rat
41120841LOC120101583uncharacterized LOC12010158336170468761819104Rat
41088371LOC120101582titin-like36177607861777691Rat
1593250Ccdc141coiled-coil domain containing 14136194861462109968Rat
1562244Sestd1SEC14 and spectrin domain containing 136212359062220759Rat
41312347Rnu6-480RNA, U6 small nuclear 48036216149362161596Rat
6500051Nsa2-ps20NSA2 ribosome biogenesis factor, pseudogene 2036227736762278418Rat
1311181Zfp385bzinc finger protein 385B36235518262640417Rat
41237371LOC120102119small nucleolar RNA U336259913262599217Rat
41353490LOC120101584uncharacterized LOC12010158436260438162611643Rat
1565385Cwc22CWC22 spliceosome associated protein36281523062864269Rat
1592094Gapdh-ps115Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 11536288481362893102Rat
41362468LOC120102114U2 spliceosomal RNA36292034662920495Rat
1584801Paics-ps1phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase, pseudogene 136305576063061070Rat
1589690Hspa8-ps15heat shock protein family A (Hsp70) member 8, pseudogene 1536306810263070159Rat
1564319RGD1564319similar to TF-1 apoptosis related protein 1936364461563646013Rat
40954226LOC120101585uncharacterized LOC12010158536378325263786957Rat
1308894Ube2e3ubiquitin-conjugating enzyme E2E 336378697663851400Rat
7729778LOC102552685uncharacterized LOC10255268536403516264045120Rat
1593249Itga4integrin subunit alpha 436416276464235010Rat
1561057Cerklceramide kinase-like36423871464344695Rat
41032087LOC120101977U6 spliceosomal RNA36425514664255247Rat
7692756LOC102553021uncharacterized LOC10255302136434495264382593Rat
3165Neurod1neuronal differentiation 136436022264363526Rat
7645726LOC102553121uncharacterized LOC10255312136441340964422066Rat
9124575LOC103691830uncharacterized LOC10369183036453035764536487Rat
1310767Itprid2ITPR interacting domain containing 236453670764573978Rat
1562095Ppp1r1cprotein phosphatase 1, regulatory (inhibitor) subunit 1C36461670064719696Rat
68329Pde1aphosphodiesterase 1A36474514065025178Rat
9254480LOC103691836uncharacterized LOC10369183636510945665118974Rat
1307813Dnajc10DnaJ heat shock protein family (Hsp40) member C1036523203165272732Rat
1311315Frzbfrizzled-related protein36533227465365208Rat
61939Nckap1NCK-associated protein 136541745065491769Rat
1307457Dusp19dual specificity phosphatase 1936553842465554465Rat
41378879LOC120102120small nucleolar RNA U336555215365552258Rat
1303069Nup35nucleoporin 3536555520365594488Rat
41366090LOC120102070small nucleolar RNA SNORA1736563224465632364Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10625D3Mgh2013034711353147113655Ratregion
10678D3Mgh2118234187457841874764Ratregion
11260D3Mit830935030267950302886Ratregion
11261D3Wox912735043691350437042Ratregion
11262D3Wox1012635043691350437041Ratregion
11263D3Wox1426635043678550437053Ratregion
11264D3Arb723235043691250437162Ratregion
33862D3Mit924733035677330357018Ratregion
34146D3Mgh610735318459353184692Ratregion
34336D3Mgh714133945463739454780Ratregion
36047D3Rat4614733684746636847613Ratregion
36167D3Rat5012232071409020714212Ratregion
36195D3Rat5115032146466021464822Ratregion
36311D3Rat3915535853954358539716Ratregion
37282D3Rat10317234539071445390751Ratregion
37282D3Rat10317234539071445390886Ratregion
37394D3Rat12322034480510444805331Ratregion
37510D3Rat10022133819223338192458Ratregion
37538D3Rat11919735522363155223816Ratregion
37588D3Rat18917733871036538710544Ratregion
35394D3Rat4331235053426450534572Ratregion
37010D3Rat4916032749462127494778Ratregion
37032D3Rat6612735074962750749747Ratregion
37756D3Rat7519635381484153815045Ratregion
36456D3Rat4114635329644153296578Ratregion
36472D3Rat4413134418827844188411Ratregion
36793D3Rat4213135446087154461002Ratregion
36799D3Rat4012835076644950766577Ratregion
34927D3Rat19017533238565332385832Ratregion
34979D3Rat387036113421661134348Ratregion
35589D3Rat3716436465530564655484Ratregion
35745D3Rat4813032946323529463355Ratregion
39638D3Rat17912436090714760907273Ratregion
39912D3Rat18010036101774961017857Ratregion
38148D3Rat8217233323078833230976Ratregion
38194D3Rat10921735924209659242327Ratregion
38346D3Rat9819933370334733703538Ratregion
40484D3Rat23930835431950054319800Ratregion
38472D3Rat9521535753806557538284Ratregion
38552D3Rat8022733552842835528639Ratregion
38646D3Rat11720332901749029017683Ratregion
38652D3Rat11820033750766037507860Ratregion
38666D3Rat13443035729287357293295Ratregion
38686D3Rat8417435639596856396132Ratregion
40102D3Rat20716936434882864348997Ratregion
40122D3Rat18614934365019843650351Ratregion
40362D3Rat18716234419364344193805Ratregion
38818D3Rat8311034539162145391731Ratregion
38870D3Rat7420936442373064423941Ratregion
38882D3Rat8914733582336035823507Ratregion
38904D3Rat12221834234325842343454Ratregion
39034D3Rat11314534724284247242983Ratregion
39050D3Rat13024934723321147233430Ratregion
39214D3Rat13120232143858421438758Ratregion
39286D3Rat10822936193407961934304Ratregion
39494D3Rat18420534727045547270670Ratregion
42139D3Arb816936295100862951183Ratregion
42296D3Rat28623335266386052664091Ratregion
41162D3Rat18114135096850750968636Ratregion
41246D3Rat17817536308228863082465Ratregion
41326D3Rat18316935175380551753978Ratregion
42642D3Rat27617032285809622858240Ratregion
42643D3Rat27420034445632444456527Ratregion
42644D3Rat27314934659640246596549Ratregion
42645D3Rat28818835569630855696486Ratregion
42646D3Rat27124136049493360495175Ratregion
42647D3Rat27221536232966862329885Ratregion
42648D3Rat27021035357736353577586Ratregion
40912D3Rat19124932134384121344079Ratregion
40940D3Rat18216935481679754816958Ratregion
41780D3Rat22714734382736443827511Ratregion
41842D3Rat22824933855024938550487Ratregion
41864D3Rat24022635034484250345069Ratregion
41908D3Rat27522434408420044084415Ratregion
44552D9Wox2113634175726141757340Ratregion
43620D3Got1720432213140522131609Ratregion
43627D3Got2320733584981235850019Ratregion
43628D3Got2512933496716834967297Ratregion
43629D3Got2727433540087735401151Ratregion
43630D3Got2421033530572735305935Ratregion
43631D3Got3014833835368538353831Ratregion
43631D3Got3014833835368538354081Ratregion
43631D3Got3014833835378538353831Ratregion
43632D3Got3122533790353937903764Ratregion
43634D3Got3318534776986247770067Ratregion
43637D3Got17720735144683751447044Ratregion
60800D3Wox215234916291149163071Ratregion
60801D3Wox310033117232031172424Ratregion
60385D3Got17521932419245524192674Ratregion
60386D3Got1829132794445927944750Ratregion
60388D3Got2026032354297723543237Ratregion
60389D3Got2112732775715227757279Ratregion
60390D3Got2213533410549734105633Ratregion
60391D3Got2615133362564633625797Ratregion
60392D3Got2819533298503532985232Ratregion
60393D3Got2920933568974835689957Ratregion
69530D3Uwm229135504977655050062Ratregion
625799D3Got1322732118841821188642Ratregion
625833D3Got17616333853930338539466Ratregion
66445D3Mco1415535754995557550118Ratregion
66449D3Mco1623632501365025013911Ratregion
66486D3Mco2715635692085156921009Ratregion
727993D3Chm6623135609524556095476Ratregion
727995D3Chm6125033120619931206451Ratregion
727998D3Chm1122732920940029209628Ratregion
727999D3Chm1021434617489446175108Ratregion
728001D3Chm5829632859654628596842Ratregion
728002D3Chm7621533172899331729208Ratregion
728004D3Chm1215134627369846273849Ratregion
728008D3Chm6825036296288562962920Ratregion
728008D3Chm6825036296292062962984Ratregion
728009D3Chm6221135351357553513786Ratregion
728013D3Chm2519233022278930222981Ratregion
728014D3Chm5120834170074041700952Ratregion
728016D3Chm6422835474073554740965Ratregion
728019D3Chm823033167512931675359Ratregion
728020D3Chm2616535473947654739641Ratregion
728022D3Chm2221134813530148135514Ratregion
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5504829ha225248436304447163044955Ratregion
5505065Scn1a41635043260850433910Ratregion
5505073Scn3a39335043260850433887Ratregion
5505409Mtx297035979191359792883Ratregion
5505937Acvr2a14233320543933205581Ratregion
5506090Neurod121336436089364361106Ratregion
5506453UniSTS:480790146635962960959631076Ratregion
5506555NEUROD1_22184236435956764360409Ratregion
5506260D6S451168932221208922213778Ratregion
5506614PTMA_1751035954805359548839Ratregion
5506989fd52b08.x1035443660854437968Ratregion
5506989fd52b08.x1035443661854437968Ratregion
5499735UniSTS:23438515632293100022931156Ratregion
5499737UniSTS:23443020135965120359651404Ratregion
5499741UniSTS:23439214733769062337690770Ratregion
5499687Acvr18334297980942980549Ratregion
5499587At-9B-134114132445043524451577Ratregion
5500987PMC109903P2034169161141692285Ratregion
5502082MARC_31635-31636:1045776384:135133328919633289547Ratregion
5500330GDB:1928839135959718459597275Ratregion
5499691Acvr2033328208633283655Ratregion
5500208G6700752636542091365421439Ratregion
5502786DPP420034696411146964311Ratregion
5503122GOLGA1-197632280041922801395Ratregion
5503190ksks38827133328923733289508Ratregion
5500553RH13592620536059491060595115Ratregion
5500571RH13603320234519820545198407Ratregion
5500619RH13632818536058629260586477Ratregion
5500769stSG612955035637685756377572Ratregion
5503536ANP32C__431474936129194061292660Ratregion
5503706UniSTS:46754065835964867659649334Ratregion
5501119PMC140695P338736436082764361214Ratregion
5501063PMC133732P146133410682134107282Ratregion
5504787UniSTS:27418322936436129564361524Ratregion
5501758MARC_11813-11814:1029266043:1035480345254803911Ratregion
5501746MARC_10305-10306:998934185:198132284629922847280Ratregion
5501786MARC_12189-12190:1004712897:113235624630856246939Ratregion
5501904MARC_17149-17150:1028234160:136234459259544592957Ratregion
5501666Hoxd13129135957109759572388Ratregion
5505540D2S171152732229830222299679Ratregion
5505618UniSTS:485602035430925454309840Ratregion
5501942MARC_17905-17906:1025019334:1033328802833289310Ratregion
5502004MARC_23497-23498:1027358865:166736170426361704930Ratregion
5502996Dlx275535637233856373093Ratregion
5502331RH1245029035626481456264904Ratregion
Position Markers

Flank 1: (D3Rat50)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2320,714,090 - 20,714,212 (+)MAPPER
Rnor_6.0321,223,803 - 21,223,924NCBI
Rnor_5.0326,468,864 - 26,468,985UniSTS
RGSC_v3.4316,685,411 - 16,685,533RGD
RGSC_v3.4316,685,412 - 16,685,533UniSTS
RGSC_v3.1316,581,784 - 16,581,905RGD
Celera315,383,635 - 15,383,756UniSTS
RH 3.4 Map3209.71UniSTS
RH 3.4 Map3209.71RGD
RH 2.0 Map3100.1RGD
SHRSP x BN Map37.0999RGD
FHH x ACI Map311.33RGD
Flank 2: (D3Got19)
Rat AssemblyChrPosition (strand)Source
Rnor_5.0330,463,327 - 30,463,421NCBI
RGSC_v3.4320,828,838 - 20,828,959UniSTS
RGSC_v3.4320,828,837 - 20,828,959RGD
RGSC_v3.1320,725,210 - 20,725,331RGD
Celera323,036,558 - 23,036,679UniSTS
RH 3.4 Map3270.6RGD
RH 3.4 Map3270.6UniSTS
Cytogenetic Map3q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145428441896Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32419245527494778Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32419245527494778Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32419245527494778Rat
1298073Cm13Cardiac mass QTL 132.5heart mass (VT:0007028)heart wet weight (CMO:0000069)32501391138192233Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)32749462144188411Rat
2313049Bss72Bone structure and strength QTL 722.60.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2313076Bss74Bone structure and strength QTL 7420.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)32749462150302886Rat
2313079Bss73Bone structure and strength QTL 731.5tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)32749462150302886Rat
2313101Bmd76Bone mineral density QTL 763.60.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)32749462150302886Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32824968773249687Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32824968773249687Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32824968773249687Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32824968773249687Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32846857173468571Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33068464275684642Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33068464275684642Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33142640370668733Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33142640370668733Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33142640370668733Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33142640370668733Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33142640370668733Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33142640370668733Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33370334761017857Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
10450852Stl33Serum triglyceride level QTL 333.40.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)33819223350749747Rat
10450816Scl75Serum cholesterol level QTL 754.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
10450813Scl74Serum cholesterol level QTL 745.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
4889975Bmd81Bone mineral density QTL 814.3tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)33871036550302886Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)33945463753296578Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)33945463762951183Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1582249Bw77Body weight QTL 773.20.0025epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)35318459364655484Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)35318469289878207Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35378111291609953Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)36113434889115068Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general software used: STATISTICA 10 CZ; ANOVA  
qtl_general measurement method: 4 month old male rats were fed high-sucrose diet for 1 week; blood samples were taken from the tail vein after overnight fasting, lipoprotein fractions were determined by HPLC 10402111
qtl_general confidence interval: 16,845-20,626 Kbp 10402111
qtl_general 21 genes are present in this region 10402111
qtl_general 12th fraction of very small LDL 10402111
qtl_general number of animals used: 8-13 males, 4 month old from 15 PXO recombinant inbred strains