Bp37 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bp37 (Blood pressure QTL 37) Rattus norvegicus

Symbol: Bp37
Name: Blood pressure QTL 37
RGD ID: 61356
Trait: blood pressure trait   (VT:0000183)    
Measurement Type: systolic blood pressure   (CMO:0000004)    
LOD Score: 3.0
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8351,092,561 - 96,092,561RGD_MAPPER_PIPELINE
mRatBN7.2330,684,642 - 75,684,642RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0332,130,997 - 77,130,997RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0338,749,889 - 83,749,889RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4328,022,667 - 73,022,667RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.1327,919,040 - 72,919,040RGD
Cross Type: F2
Strains Crossed: SS/Jr LEW 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Oxt is a candidate Gene for Bp37


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp37Rathypertension  IDA 61040 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp37Ratincreased systemic arterial blood pressure  QTM 61040 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp37Ratsystolic blood pressure  IDA 61040 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp37Ratcontrolled sodium content diet  IDA 61040 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp37Rattail cuff photoplethysmography  IDA 61040 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp37RatLEW  IEA 61040 RGD 
Bp37RatSS/Jr  IEA 61040 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp37Ratblood pressure trait  IDA 61040 RGD 


#
Reference Title
Reference Citation
1. Chromosomal and comparative mapping of rat oxytocin, oxytocin receptor and vasopressin genes. Dutil J, etal., Cytogenet Cell Genet 2001;93(1-2):57-9.
2. Genome scan and congenic strains for blood pressure QTL using Dahl salt-sensitive rats. Garrett MR, etal., Genome Res 1998 Jul;8(7):711-23


1 to 20 of 720 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
2322483Traf7-ps2TNF receptor associated factor 7, pseudogene 233076880130770318Rat
41087157LOC120102072small nucleolar RNA SNORA1733081550330815603Rat
2323086Ddx18-ps2DEAD-box helicase 18, pseudogene 233120713731210520Rat
11429489LOC108350370uncharacterized LOC10835037033121664431228107Rat
9265290Elobl8elongin B like 833125526531255970Rat
41126518LOC120101546uncharacterized LOC12010154633134491731365067Rat
41040480LOC120102009small nucleolar RNA SNORA433136654831366647Rat
11383937LOC108350593uncharacterized LOC10835059333136701831374155Rat
41304536LOC120101992U7 small nuclear RNA33142960831429669Rat
41080470LOC120102080small nucleolar RNA SNORA4033152792831528053Rat
1590993Rpl37l4ribosomal protein L37 like 433209113732091463Rat
1334145Or6c247-ps1olfactory receptor family 6 subfamily C member 247, pseudogene 133210782932108276Rat
1589738Max-ps1MYC associated factor X, pseudogene 133252095032521403Rat
7597606R3hdm2-ps1R3H domain containing 2, pseudogene 133264742532683617Rat
11507559LOC108350372uncharacterized LOC10835037233297332732986885Rat
70911Acvr2aactivin A receptor type 2A33320496133292673Rat
735212Orc4origin recognition complex, subunit 433329084433334022Rat
1562961Mbd5methyl-CpG binding domain protein 533358885433738730Rat
41358771LOC120101434uncharacterized LOC12010143433378665333790312Rat
1307271Epc2enhancer of polycomb homolog 233386721933967908Rat

1 to 20 of 720 rows
1 to 20 of 563 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10275D3Wox1519536943021969430414Ratregion
10625D3Mgh2012434711353147113655Ratregion
10678D3Mgh2118234187457841874764Ratregion
11260D3Mit820735030267950302886Ratregion
11261D3Wox912735043691350437042Ratregion
11262D3Wox1012635043691350437041Ratregion
11263D3Wox1426635043678550437053Ratregion
11264D3Arb724835043691250437162Ratregion
34146D3Mgh69935318459353184692Ratregion
34336D3Mgh714333945463739454780Ratregion
36047D3Rat4614733684746636847613Ratregion
36261D3Rat3216836822606368226231Ratregion
36311D3Rat3917335853954358539716Ratregion
37282D3Rat10317234539071445390751Ratregion
37282D3Rat10317234539071445390886Ratregion
37394D3Rat12322734480510444805331Ratregion
37510D3Rat10022533819223338192458Ratregion
37538D3Rat11919735522363155223816Ratregion
37588D3Rat18917933871036538710544Ratregion
35317D3Rat3517937013996270140141Ratregion
1 to 20 of 563 rows

Peak: (D3Mgh6)
Rat AssemblyChrPosition (strand)Source
GRCr8373,592,512 - 73,592,611 (+)Marker Load Pipeline
mRatBN7.2353,184,593 - 53,184,692 (+)MAPPER
Rnor_6.0354,630,948 - 54,631,046NCBI
Rnor_5.0361,249,840 - 61,249,938UniSTS
RGSC_v3.4350,522,619 - 50,522,717UniSTS
RGSC_v3.4350,522,618 - 50,522,717RGD
RGSC_v3.1350,418,991 - 50,419,089RGD
Celera352,752,755 - 52,752,853UniSTS
RH 3.4 Map4528.72UniSTS
RH 3.4 Map4528.72RGD
SHRSP x BN Map336.0899UniSTS
SHRSP x BN Map336.0899RGD
FHH x ACI Map339.47RGD
Cytogenetic Map3 RGD


1 to 10 of 91 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
1298073Cm13Cardiac mass QTL 132.5heart mass (VT:0007028)heart wet weight (CMO:0000069)32501391138192233Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)32749462144188411Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat

1 to 10 of 91 rows


Database
Acc Id
Source(s)
NCBI Gene Bp37

Note Type Note Reference
qtl_gene oxcytocin (Oxt) mapped to the QTL region and proposed to be a candidate gene 631223