Bw77 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Bw77 (Body weight QTL 77) Rattus norvegicus

Symbol: Bw77
Name: Body weight QTL 77
RGD ID: 1582249
Also known as: Adiposity index
Trait: epididymal fat pad mass   (VT:0010421)    
Measurement Type: epididymal fat pad weight to body weight ratio   (CMO:0000658)    
LOD Score: 3.2
P Value: 0.0025
Variance: 12.0
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0354,630,948 - 66,711,785RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0361,249,840 - 73,270,928RGDRnor5.0
RGSC_v3.4350,522,618 - 62,558,206RGDRGSC3.4
RGSC_v3.1350,418,991 - 62,454,578RGD
Cross Type: intercross
Strains Crossed: PD/Cub BN/Cub 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BN/Cub  (IEA)
PD/Cub  (IEA)

References

References - curated
1. Seda O, etal., Physiol Genomics. 2005 Apr 14;21(2):243-52. Epub 2005 Feb 22.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
68407Lrp2LDL receptor related protein 235566515355822484Rat
69277Chrna1cholinergic receptor nicotinic alpha 1 subunit36044565760460724Rat
619911Gorasp2golgi reassembly stacking protein 235696665456995369Rat
620052Atp5mc3ATP synthase membrane subunit c locus 336081121860813903Rat
3165Neurod1neuronal differentiation 136641431466417617Rat
2652Gad1glutamate decarboxylase 135686144056902139Rat
69427Pdk1pyruvate dehydrogenase kinase 135853087058561494Rat
2452Cyctcytochrome c, testis36320477963211847Rat
620852Klhl41kelch-like family member 4135591017755923303Rat
620315Ppigpeptidylprolyl isomerase G35595975655990040Rat
621862Atf2activating transcription factor 236072113760795951Rat
620887Wipf1WAS/WASL interacting protein family, member 136015000160207125Rat
620655Dhrs9dehydrogenase/reductase 935562367155645883Rat
620174Dync1i2dynein cytoplasmic 1 intermediate chain 235781767757868854Rat
620139Chn1chimerin 136051236060668413Rat
628862Rbm45RNA binding motif protein 4536322066063235638Rat
621114Ttntitin36356516063837815Rat
619738Ddit4l2DNA-damage-inducible transcript 4-like 235597417955974539Rat
727807Hnrnpa3heterogeneous nuclear ribonucleoprotein A336248122262491356Rat
1304853Dlx2distal-less homeobox 235818008858181971Rat
620360Nfe2l2nuclear factor, erythroid 2-like 236249756862525146Rat
620364Agpsalkylglycerone phosphate synthase36264835262749250Rat
621886Rapgef4Rap guanine nucleotide exchange factor 435863233858925127Rat
621793Pde11aphosphodiesterase 11A36281850263211843Rat
619930Abcb11ATP binding cassette subfamily B member 1135548002455587946Rat
620804Ssbsmall RNA binding exonuclease protection factor La35609242556102008Rat
621633Itga6integrin subunit alpha 635844290458515124Rat
1307811Spc25SPC25 component of NDC80 kinetochore complex35543853455451961Rat
1306473Mtx2metaxin 236175610961818999Rat
69398G6pc2glucose-6-phosphatase catalytic subunit 235546452855467170Rat
1305594Evx2even-skipped homeobox 236156491761581598Rat
1305740Cybrd1cytochrome b reductase 135771849657745749Rat
1305716Hat1histone acetyltransferase 135802239558070067Rat
1307166Klhl23kelch-like family member 2335605695756070614Rat
1307413Metap1dmethionyl aminopeptidase type 1D (mitochondrial)35808455858160748Rat
1306707Prkraprotein activator of interferon induced protein kinase EIF2AK236348908163507918Rat
1305181Slc25a12solute carrier family 25 member 1235788195157998214Rat
1307982Ola1Obg-like ATPase 135980200759920935Rat
1308417Hoxd13homeo box D1336159037661593692Rat
1309690Hoxd4homeo box D436163400561653581Rat
1310718Bbs5Bardet-Biedl syndrome 535588669555907717Rat
1310767Itprid2ITPR interacting domain containing 236659376766631143Rat
1312042Lnpklunapark, ER junction formation factor36143212861494828Rat
1306511Hoxd10homeo box D1036161413361617342Rat
1309797Hoxd12homeo box D1236159738261598503Rat
1309363Cdca7cell division cycle associated 735915328159163916Rat
1308894Ube2e3ubiquitin-conjugating enzyme E2E 336581507665876256Rat
1309179Hoxd1homeo box D136168561961687758Rat
1309162Gpr155G protein-coupled receptor 15536005154560105567Rat
1309199Cir1corepressor interacting with RBPJ, CIR135999454760023843Rat
1305064Scrn3secernin 336002397060048746Rat
1305293Fkbp7FKBP prolyl isomerase 736352248063535835Rat
1308887Osbpl6oxysterol binding protein-like 636325764663455105Rat
1308818Ccdc173coiled-coil domain containing 17335599572856030763Rat
1308499Sp5Sp5 transcription factor35676647556769277Rat
1309593Dlx1distal-less homeobox 135816493158169521Rat
1305244Plekha3pleckstrin homology domain containing A336353616663557378Rat
1310370Tlk1tousled-like kinase 135701273857376336Rat
1566062Mettl5methyltransferase like 535610159756113823Rat
1563852Erich2glutamate-rich 235680138756839435Rat
1561394Map3k20mitogen-activated protein kinase kinase kinase 2035896502559120507Rat
1560451Ndufa7lNADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7-like35951624359516746Rat
1565551Dcaf17DDB1 and CUL4 associated factor 1735764679957678802Rat
1564319RGD1564319similar to TF-1 apoptosis related protein 1936567205865673456Rat
1561057Cerklceramide kinase-like36626883566395615Rat
1561059Mettl8methyltransferase like 835725739457642096Rat
1311181Zfp385bzinc finger protein 385B36426981764556084Rat
1562095Ppp1r1cprotein phosphatase 1, regulatory (inhibitor) subunit 1C36667306066783501Rat
1359274Phospho2phosphatase, orphan 235603091556038076Rat
1560121Ttc30a1tetratricopeptide repeat domain 30A136280093262803373Rat
1560313Myo3bmyosin IIIB35635543356717740Rat
1584075LOC688891similar to Ras-GTPase-activating protein binding protein 2 (GAP SH3-domain binding protein 2) (G3BP-2)36136894361371098Rat
1563531Fastkd1FAST kinase domains 135592559855951584Rat
1559457Sp9Sp9 transcription factor35998195959984489Rat
1582908Hoxd9homeo box D936162019261622360Rat
1583765Sp3Sp3 transcription factor35964457959689011Rat
727920Nostrinnitric oxide synthase trafficking35536928255433840Rat
1562244Sestd1SEC14 and spectrin domain containing 136403781464134973Rat
1565767RGD1565767similar to ribosomal protein L1535719149657192132Rat
1564400RGD1564400similar to Eukaryotic translation initiation factor 5 (eIF-5)35502124855022439Rat
1565257Ubr3ubiquitin protein ligase E3 component n-recognin 335612592756283908Rat
1561599Cers6ceramide synthase 635509424055338370Rat
1565385Cwc22CWC22 spliceosome associated protein homolog36473114564780127Rat
1563716RGD1563716similar to hematological and neurological expressed sequence 135958740159588136Rat
1592094LOC295681similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)36480108764809553Rat
1590784Ttc30btetratricopeptide repeat domain 30B36275875462761325Rat
1589690LOC366085hypothetical pseudogene on chromosome 3q2436499681864998799Rat
1589691LOC366071similar to Ubiquitin-like protein FUBI35712304857123525Rat
1589692LOC366068similar to nuclease sensitive element binding protein 135535505055356536Rat
1587670Eno1-ps1enolase 1, (alpha), pseudogene 135940853159410209Rat
1588374LOC502637similar to prothymosin alpha36155468261555122Rat
1584801LOC679740hypothetical protein LOC67974036498439264989706Rat
1596954LOC678730similar to Acidic leucine-rich nuclear phosphoprotein 32 family member A (Leucine-rich acidic nuclear protein)36320649963207432Rat
1587131Pjvkpejvakin36350838663518163Rat
1593249Itga4integrin subunit alpha 436617874566265547Rat
1593250Ccdc141coiled-coil domain containing 14136386524064024208Rat
1588601Hoxd3homeo box D336165056961670285Rat
1593251LOC311105hypothetical LOC31110535468793854688997Rat
1597699LOC685184similar to protein expressed in prostate, ovary, testis, and placenta 8 isoform 235473306154898516Rat
2318157Ttc30atetratricopeptide repeat domain 30A36280363562810291Rat
2320625LOC100364636hypothetical LOC10036463636150651261546375Rat
2320728LOC100361132mitochondrial ribosomal protein S3635837867258379247Rat
2323302LOC100359840hypothetical LOC10035984035934767959352373Rat
2325397Mir10bmicroRNA 10b36164797861648086Rat
6489440Hoxd8homeobox D836162732961629743Rat
6500051LOC100910096ribosome biogenesis protein NSA2 homolog36419086064191853Rat
7527047LOC102552809uncharacterized LOC10255280936112474261125535Rat
7504310LOC102553348high mobility group protein B1-like36069801460699109Rat
7498194LOC102549016uncharacterized LOC10254901635807371958084552Rat
7521145LOC102546631tubulin-specific chaperone A-like35983834659840504Rat
7645726LOC102553121uncharacterized LOC10255312136647285266478730Rat
7624532LOC102553063uncharacterized LOC10255306336137154761374579Rat
7612019LOC102546819uncharacterized LOC10254681935977583059827941Rat
7545246LOC102551299uncharacterized LOC10255129936281007662817724Rat
7560679LOC10255585060S ribosomal protein L10-like36252750462530714Rat
7578805LOC102550670cofilin-1-like35582794055851899Rat
7549589LOC102555148uncharacterized LOC10255514835826865558275095Rat
7566091LOC102554564uncharacterized LOC10255456436244447462446763Rat
7584653LOC102549214uncharacterized LOC10254921435825310358267395Rat
7606520LOC102552170uncharacterized LOC10255217036047513860504203Rat
7554897LOC10255355240S ribosomal protein S7-like36142488861430341Rat
7735004LOC102553948uncharacterized LOC10255394836189445061910573Rat
7692756LOC102553021uncharacterized LOC10255302136640318466437012Rat
7752709LOC102556671uncharacterized LOC10255667135938855859404628Rat
7704882LOC102555817dynein heavy chain 17, axonemal-like35952233959529760Rat
7705590LOC102552328uncharacterized LOC10255232836052059460522523Rat
7724987LOC102552587uncharacterized LOC10255258736592131766017347Rat
7730945LOC102548511uncharacterized LOC10254851135757012357607509Rat
7731804LOC102555296uncharacterized LOC10255529635904089259042440Rat
7733574LOC102554395uncharacterized LOC10255439536230074362303280Rat
7718479LOC102553814serine/arginine repetitive matrix protein 1-like36455600464650323Rat
7711558LOC102554010uncharacterized LOC10255401036197526961980258Rat
7729778LOC102552685uncharacterized LOC10255268536606581466077085Rat
7730597Hoxd11homeobox D1136160425661606874Rat
9129688LOC103691834spidroin-2-like36413429564163622Rat
9092875LOC10369181960S ribosomal protein L9 pseudogene35960400659605799Rat
9078858LOC103695171uncharacterized LOC10369517135886657358890606Rat
9183373LOC103691820uncharacterized LOC10369182035973828859749268Rat
9183958LOC103691827uncharacterized LOC10369182736428090164282793Rat
9186608LOC103691828uncharacterized LOC10369182836457763364583106Rat
9124575LOC103691830uncharacterized LOC10369183036659189966593641Rat
9221591LOC103691824uncharacterized LOC10369182436167328061676585Rat
9224218LOC103691818uncharacterized LOC10369181835954434859546824Rat
9231074LOC103691825uncharacterized LOC10369182536259370662599492Rat
9374791LOC103691832titin-like36377566063783202Rat
9290598LOC103691829uncharacterized LOC10369182936603497266042705Rat
9345818LOC103691823NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 pseudogene36087358960873919Rat
9363764LOC103691817uncharacterized LOC10369181735941246759435352Rat
9422868LOC103695172uncharacterized LOC10369517235981793359839929Rat
9330172LOC10369182160S ribosomal protein L27 pseudogene35991575659916448Rat
9466611LOC103691815uncharacterized LOC10369181535680389256810462Rat
9400923LOC103691816uncharacterized LOC10369181635830124258306076Rat
9410854LOC103690367uncharacterized LOC10369036735480926854898516Rat
9450923LOC103691826CAVP-target protein-like36378661363787869Rat
11369516LOC10835039560S ribosomal protein L7a pseudogene35916535359166153Rat
11466658LOC108350400uncharacterized LOC10835040036212621362137120Rat
11435666LOC108350403uncharacterized LOC10835040336228352162286116Rat
11444049LOC108350402uncharacterized LOC10835040236219006762202455Rat
11362073LOC108350398uncharacterized LOC10835039836043748560439887Rat
11435886LOC10835039960S ribosomal protein L19 pseudogene36072254860726276Rat
11436644LOC108350391uncharacterized LOC10835039135676243756767853Rat
11437224LOC108350397uncharacterized LOC10835039735955350559619664Rat
11446776LOC10835059540S ribosomal protein S13-like35921977559220936Rat
11360265LOC108350409uncharacterized LOC10835040936654745766569904Rat
11429097LOC108350392glyceraldehyde-3-phosphate dehydrogenase pseudogene35776398557772071Rat
11406701LOC108350407protein argonaute 2-like36581300565815426Rat
11417539LOC108350406uncharacterized LOC10835040636534363965346940Rat
11422631LOC108350582serine/arginine-rich splicing factor 3 pseudogene36002069560023765Rat
11426631LOC108350393uncharacterized LOC10835039335814934058150720Rat
11408567LOC108350390uncharacterized LOC10835039035587632455878433Rat
11401035LOC108350389glucose-6-phosphatase 2-like35545977255517670Rat
11380115LOC108350394uncharacterized LOC10835039435837925558406210Rat
11393210LOC108350408uncharacterized LOC10835040836641819466443018Rat
11478808LOC108350396uncharacterized LOC10835039635928271859288237Rat
11497441LOC108350598high mobility group protein B1 pseudogene36538336265384083Rat
11498064LOC108350596NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 pseudogene35951622459517656Rat
11498171LOC108350401uncharacterized LOC10835040136217426862202343Rat
11498180LOC108350405uncharacterized LOC10835040536416815064182635Rat
11514172LOC108350557uncharacterized LOC10835055735912237059140151Rat
11486579LOC108350597ubiquitin-conjugating enzyme E2 S-like36069773560699697Rat
11492074LOC108350404uncharacterized LOC10835040436414861964154370Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34146D3Mgh610735463094854631046Ratregion
36311D3Rat3915536054233660542508Ratregion
37538D3Rat11919735671518356715367Ratregion
37756D3Rat7519635527882455279027Ratregion
36456D3Rat4114635474564454745780Ratregion
36793D3Rat4213135593676055936890Ratregion
34979D3Rat387036304891963049050Ratregion
35589D3Rat3716436671160766711785Ratregion
39638D3Rat17912436281209062812215Ratregion
39912D3Rat18010036292286862922975Ratregion
38194D3Rat10921736124103361241263Ratregion
40484D3Rat23930835579531855795617Ratregion
38472D3Rat9521535936949659369714Ratregion
38666D3Rat13443035912343859123859Ratregion
38686D3Rat8417435820446358204626Ratregion
40102D3Rat20716936640292966403097Ratregion
38870D3Rat7420936648039566480603Ratregion
39286D3Rat10822936384948163849705Ratregion
42139D3Arb816936488041264880586Ratregion
41246D3Rat17817536500949765009673Ratregion
42645D3Rat28818835718817157188348Ratregion
42646D3Rat27124136239757662397817Ratregion
42647D3Rat27221536424428564244499Ratregion
42648D3Rat27021035503083955031061Ratregion
40940D3Rat18216935629392756294087Ratregion
69530D3Uwm229135653201456532299Ratregion
66445D3Mco1415535938138659381548Ratregion
66486D3Mco2715635874102658741183Ratregion
727993D3Chm6623135787902057879250Ratregion
728008D3Chm6825036489211964892832Ratregion
728008D3Chm6825036489211964892368Ratregion
728009D3Chm6221135496361054963820Ratregion
728016D3Chm6422835621773456217961Ratregion
728020D3Chm2616535621647556216639Ratregion
728031D3Chm6520135648406356484263Ratregion
728034D3Chm6323435524527655245509Ratregion
1630180D3Got21426335824489158245153Ratregion
1630689D3Got22418436445405264454235Ratregion
1628626D3Got22222636042768060427893Ratregion
1628955D3Got21810535886071858860822Ratregion
1628981D3Got25516036076128960761448Ratregion
1629862D3Got20922335638866856388890Ratregion
1638896D3Got21124335585691455857156Ratregion
1638950D3Got29514235869529258695437Ratregion
1639716D3Got29811536345758663457695Ratregion
1639976D3Got21717135888071958880886Ratregion
1640692D3Got30127036255412862554395Ratregion
1634910D3Got22126336102780261028064Ratregion
1635612D3Got23916036534737865347537Ratregion
1636506D3Got21917535942559459425768Ratregion
1636883D3Got22322336255417562554395Ratregion
1637018D3Got27829935778653957786837Ratregion
1637719D3Got28111836579373965793856Ratregion
1637965D3Got28816636571153065711695Ratregion
1638457D3Got21624835824492458245171Ratregion
1634638D3Got22011336123178061231887Ratregion
7193116Hoxd1323436159198961592222Ratregion
7206286Hoxd1294036159746561598404Ratregion
7206360Hoxd139436168632261686715Ratregion
7206362Hoxd1111336160622661606338Ratregion
7206364Hoxd468836164960261650289Ratregion
7206074Chrna173036045073060451459Ratregion
5036209D2Tfv515036122342261223571Ratregion
5038864RH12737719935603765956037857Ratregion
5036923AU04963618336319818163198363Ratregion
5037173RH8077318636641478566414970Ratregion
5037189RH9882114036358844163588580Ratregion
5028673RH8055322835907168559071912Ratregion
5028791RH14234215035731962557319774Ratregion
5028791RH14234215035701385157014000Ratregion
5029163RH14375311435812599558126108Ratregion
5026656RH13303819135592435655924546Ratregion
5029385RH14459016735588731055887476Ratregion
5034822AI23270522035610143856101657Ratregion
5032203U5100213835817940958179546Ratregion
5032343AI38559110736161670261616808Ratregion
50350101110004E09Rik25036252773062527979Ratregion
5027016RH13440919835980222559802422Ratregion
5032537T0356428736587089865871184Ratregion
5032997RH13723420436142675461426957Ratregion
5025238RH12754821636249052962490745Ratregion
502786516.MHAa47b4.seq19236104970261049893Ratregion
5030417BE11282315035816801858168167Ratregion
5030459BE10655315936009707360097231Ratregion
502797148.MMHAP28FLH6.seq15236229923662299387Ratregion
5028214D2Mit24712836188992461890051Ratregion
5028222D2Mit32912936188992461890052Ratregion
5028226D2Mit3817136161953561619705Ratregion
5030865BE12092621435731528957315502Ratregion
5030865BE12092621435700951557009728Ratregion
5028370UniSTS:15874950436641497166415474Ratregion
5033771RH14006118735967482259675008Ratregion
5025884RH13006819136161701061617200Ratregion
5055159RH14363912535980210659802230Ratregion
5054615RH14332610435679835156798454Ratregion
5059470AW52444218136403785664038036Ratregion
5055589RH14388822036281450862814727Ratregion
5055705RH14395520435814960858149811Ratregion
5058598BI28430115736249803962498195Ratregion
5059618BE09745217835911788059118057Ratregion
5056575RH14445716635883959458839759Ratregion
5052229D180617635548005655480131Ratregion
5052855RH14231318536073221160733361Ratregion
5052891RH14233315835980209059802247Ratregion
5058282AI07081117136355199963552169Ratregion
5049908RH13375118236025273260252913Ratregion
5049908RH13375118235964922959649410Ratregion
5052321U2806815336641468366414835Ratregion
5052381Z4997619935690134756901545Ratregion
5053491RH14267929035991288759913176Ratregion
5050900RH13432321935907146259071680Ratregion
5054205RH14309010935724372657243834Ratregion
5052937RH14236016236014964660149807Ratregion
5051332AW12199912535817916158179285Ratregion
5053303RH14257010035715034657150445Ratregion
5053407RH14263015036626427766264426Ratregion
5050956RH13435521036181861761818826Ratregion
5044406RH13058418636626929666269481Ratregion
5044412RH13058818735610091056101096Ratregion
5045236RH13106218636323530063235485Ratregion
5041454RH12886615235534364155343792Ratregion
5046158RH13159119735683921056839406Ratregion
5044206RH13047021436418257564182845Ratregion
5048826RH13312821036280450162804710Ratregion
5046388RH13172419935564727455647473Ratregion
5044524RH13065318336250039262500574Ratregion
5046026RH13151620636377571063775915Ratregion
5047632RH13243919735999460759994803Ratregion
5047708RH13248320335592278755922989Ratregion
5048864RH13315020635851482458515029Ratregion
5046752RH13193421636165328361653498Ratregion
5049148RH13331321435807397958074192Ratregion
5049206RH13334718436004823560048418Ratregion
5046894RH13201619135509634555096535Ratregion
5049662RH13360921736345481863455034Ratregion
5039322RH12764018636275172762751911Ratregion
5049566RH13355415035609969156099840Ratregion
5049614RH13358219335954655959546751Ratregion
5040196RH12814420936228360562283813Ratregion
5039548RH12776921736005164060051856Ratregion
5042138RH12926219136162214161622331Ratregion
5040822RH12850320435808290158083104Ratregion
5043442RH13002816636404368964043854Ratregion
5041372RH12881918535774715257747336Ratregion
5072490RH13688022036322413563224354Ratregion
5072804RH13706317636356516463565339Ratregion
5075094RH13839518636427961364279798Ratregion
5075158RH13843212335851461458514736Ratregion
5073942RH13772813036393023763930366Ratregion
5072390RH13682120336473135864731560Ratregion
5074390RH13798916436121741461217577Ratregion
5075946RH13888812036460354764603666Ratregion
5076544RH13923713636249114262491277Ratregion
5076552RH13924224935794275357943001Ratregion
5074620RH13812114936280096662801114Ratregion
5076852RH13941615135503266355032814Ratregion
5076116RH13898812635793954157939666Ratregion
5079416RH14098318935566648055666828Ratregion
5076260RH13907213736010040960100545Ratregion
5076500RH13921115136162540361625553Ratregion
5077588RH13984221635606958956069804Ratregion
5078198RH14020021035731821057318419Ratregion
5078198RH14020021035701243657012645Ratregion
5079754RH14118319736137148561371660Ratregion
5077848RH13999421735606884856069060Ratregion
5078934RH14063618636160982561610010Ratregion
5078576RH14042415936051239460512552Ratregion
5079250RH14085121435856122158561443Ratregion
5080482RH14160419535809070458090898Ratregion
5071274RH13498821035757012857570337Ratregion
5073608RH13753414436404183264041975Ratregion
5070652RH13462618735767854757678736Ratregion
5074050RH13779015436354531363545466Ratregion
5070954RH13480220935786846357868671Ratregion
5071832RH13531021535794030257940516Ratregion
5071894RH13534621435786823657868449Ratregion
5074556RH13808516535620065756200821Ratregion
5063366BI30170915036584587465846023Ratregion
5065062BF40560518636112523661125421Ratregion
5066758AU04816813836104669161047143Ratregion
5066780AU04815520636304472563044930Ratregion
5067120AU04795123835724958857249828Ratregion
5067934AU04744915135990610759906257Ratregion
5070315X6990213235851261258512743Ratregion
5070336AI6615178435603671256036795Ratregion
5069120AU04671120736612530866125514Ratregion
5063612BE10784615236071431960714470Ratregion
5063906BE12021116935628172156281890Ratregion
5065458BE11555720136275422262754422Ratregion
5062644BF40364220536264710962647313Ratregion
5064240BE11428316236396523963965400Ratregion
5062282BE10647417936023148160231659Ratregion
5062586BE10689817935725744257257620Ratregion
5062608BE10693919935531862755318825Ratregion
5087544PMC305603P121235967976459679975Ratregion
5087878Gad122135690184956902069Ratregion
5087945Hoxd921436161636861616581Ratregion
5089865AU04940913135820066658200798Ratregion
5088329AU04850414836424691564247062Ratregion
5089605AU04925424536199407261994316Ratregion
5087630PMC85623P115536641784266417996Ratregion
5090685AU04990024635527806755278312Ratregion
5090709AU04991718835675198456752173Ratregion
5090892BB10431314536167007461670218Ratregion
5089099AU04895322536199409261994316Ratregion
5085822BM39163221236108144861081659Ratregion
5083309BG37458714035906869659068835Ratregion
5081380AI07250221635767180057672015Ratregion
5081581BE11747921635543697555437190Ratregion
5502905Nfe2l2118136249844962499629Ratregion
5503103CHRNA173936045073360451471Ratregion
5504062px-58c315036540197365402122Ratregion
5504728PMC85623P328736641492866415214Ratregion
5504278D2S1570E19036363685963637048Ratregion
5504916Atf26436071991560719978Ratregion
5505426Tlk1100435731897457319977Ratregion
5505426Tlk1100435701320057014203Ratregion
5505462M2SSR54B035793503257936043Ratregion
5505462M2SSR54B035793503257936033Ratregion
5504574PMC30678P217535686295056863124Ratregion
5504829ha225248436497310464973587Ratregion
5505409Mtx297036181871161819680Ratregion
5506090Neurod121336641498666415198Ratregion
5506453UniSTS:480790146636164915061650615Ratregion
5506555NEUROD1_22184236641366066414501Ratregion
5506614PTMA_1751036155499361555777Ratregion
5506989fd52b08.x1035591250755913856Ratregion
5506989fd52b08.x1035591249755913856Ratregion
5499737UniSTS:23443020136167120461671404Ratregion
5500330GDB:1928839136161680261616892Ratregion
5500553RH13592620536249823762498441Ratregion
5500619RH13632818536248889462489078Ratregion
5500769stSG612955035818559958186313Ratregion
5503536ANP32C__431474936320663063207349Ratregion
5503706UniSTS:46754065836166867761669334Ratregion
5501119PMC140695P338736641492066415306Ratregion
5504787UniSTS:27418322936641538866415616Ratregion
5501758MARC_11813-11814:1029266043:1035628058256281040Ratregion
5501786MARC_12189-12190:1004712897:113235805136058051990Ratregion
5501666Hoxd13129136159082761592117Ratregion
5505618UniSTS:485602035578507355785657Ratregion
5502004MARC_23497-23498:1027358865:166736361747263618138Ratregion
5502996Dlx275535818108058181834Ratregion
5502331RH1245029035806985858069947Ratregion
Position Markers

Flank 1: (D3Mgh6)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0354,630,948 - 54,631,046NCBI
Rnor_5.0361,249,840 - 61,249,938UniSTS
RGSC_v3.4350,522,618 - 50,522,717RGD
RGSC_v3.4350,522,619 - 50,522,717UniSTS
RGSC_v3.1350,418,991 - 50,419,089RGD
Celera352,752,755 - 52,752,853UniSTS
RH 3.4 Map4528.72UniSTS
RH 3.4 Map4528.72RGD
SHRSP x BN Map336.0899RGD
SHRSP x BN Map336.0899UniSTS
FHH x ACI Map339.47RGD
Cytogenetic Map3 RGD
Peak: (D3Mgh6)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0354,630,948 - 54,631,046NCBI
Rnor_5.0361,249,840 - 61,249,938UniSTS
RGSC_v3.4350,522,618 - 50,522,717RGD
RGSC_v3.4350,522,619 - 50,522,717UniSTS
RGSC_v3.1350,418,991 - 50,419,089RGD
Celera352,752,755 - 52,752,853UniSTS
RH 3.4 Map4528.72UniSTS
RH 3.4 Map4528.72RGD
SHRSP x BN Map336.0899RGD
SHRSP x BN Map336.0899UniSTS
FHH x ACI Map339.47RGD
Cytogenetic Map3 RGD
Flank 2: (D3Rat37)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0366,711,607 - 66,711,785NCBI
Rnor_5.0373,270,750 - 73,270,928UniSTS
RGSC_v3.4362,558,027 - 62,558,206RGD
RGSC_v3.4362,558,028 - 62,558,206UniSTS
RGSC_v3.1362,454,399 - 62,454,578RGD
SHRSP x BN Map340.5698UniSTS
SHRSP x BN Map340.5698RGD
Cytogenetic Map3q24UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3195176874Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31009408193415837Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31011931879772001Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)310639528127023997Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)310639528127023997Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31802366463023664Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32122380366223803Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32122380366223803Rat
631685Bp118Blood pressure QTL 1183.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)32465522569655225Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32932171474321714Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32968273274682732Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32968273274682732Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32968273274682732Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32968273274682732Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32968273274682732Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32990825574908255Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32990825574908255Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)330114912123700444Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)330846101172879276Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33110358972989078Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33110358972989078Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33110358972989078Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33110358972989078Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33110358972989078Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33110358972989078Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33213099777130997Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33213099777130997Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33347735462922975Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33347735481136227Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333477354108914061Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)334394121103141944Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)339248391140271184Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)34042292185422921Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)34052359354745780Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)34052359364880586Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)34052359392654473Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)34052359392654473Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)343295930108914061Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)343295930163640485Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)343295930163640485Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34540605894467785Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)345406058127023997Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)345406058177699992Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)348561928155263151Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)348562146115249962Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)348562146115249962Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)351821836124513579Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)351822008120917851Rat
1582249Bw77Body weight QTL 773.20.0025epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)35463094866711785Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)354630948119830094Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)354630948119830094Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)354630948119830094Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)35463104693415673Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35524527695176874Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)35524527695176874Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35524527695176874Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)356735995101735995Rat
1581568Rf53Renal function QTL 53total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)358204463170534769Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)361241033165369047Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)362922868127023997Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)36304905092654302Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)366711607119830094Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)366711607119830094Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general these rats were on a high sucrose diet (HSD; 70% calories as sucrose) for 1 week; while still on sucrose diet, dexamethasone (DEX) was given in drinking water (0.026mg/ml) for 3 days then these animals were killed and the adiposity index was determined 1580752
qtl_statistics_details specific pairs of variables were compared by one or two way ANOVA with post hoc Tukey's honest significance difference test 1580752