Atp5mc3 (ATP synthase membrane subunit c locus 3) - Rat Genome Database

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Gene: Atp5mc3 (ATP synthase membrane subunit c locus 3) Rattus norvegicus
Analyze
Symbol: Atp5mc3
Name: ATP synthase membrane subunit c locus 3
RGD ID: 620052
Description: Enables ligand-gated channel activity. Involved in several processes, including pore complex assembly; response to (R)-carnitine; and response to muscle stretch. Part of cation channel complex. Orthologous to human ATP5MC3 (ATP synthase membrane subunit c locus 3); PARTICIPATES IN Alzheimer's disease pathway; Huntington's disease pathway; oxidative phosphorylation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ATP synthase F(0) complex subunit C3, mitochondrial; ATP synthase lipid-binding protein; ATP synthase lipid-binding protein, mitochondrial; ATP synthase proteolipid P3; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9); ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c, isoform 3; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9); ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9); Atp5g3; ATPase protein 9; ATPase subunit c
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2358,810,535 - 58,813,185 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl358,810,535 - 58,814,279 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx362,204,937 - 62,207,586 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0370,788,598 - 70,791,247 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0368,553,654 - 68,556,303 (-)NCBIRnor_WKY
Rnor_6.0360,811,218 - 60,813,903 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl360,811,210 - 60,813,869 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0367,289,961 - 67,292,646 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4356,511,747 - 56,514,204 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1879,924,847 - 79,924,970 (+)NCBI
Celera358,337,134 - 58,339,819 (-)NCBICelera
Cytogenetic Map3q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Investigation of differentially expressed genes in the ventricular myocardium of senescent rats. Ishihata A and Katano Y, Ann N Y Acad Sci. 2006 May;1067:142-51.
4. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
5. Differentially expressed genes and morphological changes during lengthened immobilization in rat soleus muscle. Kim JW, etal., Differentiation. 2007 Feb;75(2):147-57.
6. Rat mitochondrial ATP synthase ATP5G3: cloning and upregulation in pancreas after chronic ethanol feeding. Li HS, etal., Physiol Genomics 2001 Jul 17;6(2):91-8.
7. Batten disease and the control of the Fo subunit c pore by cGMP and calcium. McGeoch JE and Guidotti G, Eur J Paediatr Neurol. 2001;5 Suppl A:147-50.
8. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
9. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
10. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
11. GOA pipeline RGD automated data pipeline
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Comprehensive gene review and curation RGD comprehensive gene curation
14. Identification of differentially expressed genes induced in the rat brain by acetyl-L-carnitine as evidenced by suppression subtractive hybridisation. Traina G, etal., Brain Res Mol Brain Res. 2004 Dec 6;132(1):57-63. doi: 10.1016/j.molbrainres.2004.09.006.
Additional References at PubMed
PMID:12477932   PMID:18614015  


Genomics

Comparative Map Data
Atp5mc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2358,810,535 - 58,813,185 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl358,810,535 - 58,814,279 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx362,204,937 - 62,207,586 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0370,788,598 - 70,791,247 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0368,553,654 - 68,556,303 (-)NCBIRnor_WKY
Rnor_6.0360,811,218 - 60,813,903 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl360,811,210 - 60,813,869 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0367,289,961 - 67,292,646 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4356,511,747 - 56,514,204 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1879,924,847 - 79,924,970 (+)NCBI
Celera358,337,134 - 58,339,819 (-)NCBICelera
Cytogenetic Map3q23NCBI
ATP5MC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382175,176,258 - 175,181,710 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2175,176,258 - 175,181,710 (-)EnsemblGRCh38hg38GRCh38
GRCh372176,040,986 - 176,046,438 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362175,749,232 - 175,754,736 (-)NCBINCBI36Build 36hg18NCBI36
Build 342175,868,115 - 175,871,960NCBI
Celera2169,654,533 - 169,660,034 (-)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2167,922,040 - 167,927,549 (-)NCBIHuRef
CHM1_12176,046,942 - 176,052,451 (-)NCBICHM1_1
T2T-CHM13v2.02175,665,044 - 175,670,493 (-)NCBIT2T-CHM13v2.0
Atp5g3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39273,738,791 - 73,742,793 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl273,738,791 - 73,741,670 (-)EnsemblGRCm39 Ensembl
GRCm38273,908,447 - 73,912,464 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl273,908,447 - 73,911,326 (-)EnsemblGRCm38mm10GRCm38
MGSCv37273,746,507 - 73,749,351 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36273,709,289 - 73,712,133 (-)NCBIMGSCv36mm8
Celera275,595,344 - 75,598,188 (-)NCBICelera
Cytogenetic Map2C3NCBI
Atp5mc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955449310,839 - 314,086 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955449310,839 - 314,086 (+)NCBIChiLan1.0ChiLan1.0
ATP5MC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B179,904,726 - 179,909,159 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B179,904,984 - 179,909,159 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B62,454,409 - 62,458,067 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ATP5MC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13619,131,184 - 19,134,350 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3619,139,914 - 19,143,018 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03619,269,061 - 19,272,169 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3619,268,875 - 19,272,451 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13619,344,640 - 19,347,742 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03619,342,834 - 19,345,940 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03619,453,941 - 19,457,046 (-)NCBIUU_Cfam_GSD_1.0
Atp5mc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303136,282,245 - 136,285,493 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365094,836,148 - 4,839,330 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP5MC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1581,083,960 - 81,094,289 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11581,091,037 - 81,094,297 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21590,317,917 - 90,321,177 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP5MC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11060,742,581 - 60,746,302 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040138,867,190 - 138,870,677 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp5mc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478712,343,789 - 12,350,329 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478712,347,233 - 12,350,329 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp5mc3
17 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:32
Count of miRNA genes:29
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000058234
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32824968773249687Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32824968773249687Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32824968773249687Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32824968773249687Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32846857173468571Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33068464275684642Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33068464275684642Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33142640370668733Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33142640370668733Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33142640370668733Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33142640370668733Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33142640370668733Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33142640370668733Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33370334761017857Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)33945463762951183Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1582249Bw77Body weight QTL 773.20.0025epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)35318459364655484Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)35318469289878207Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35378111291609953Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 33 1 2
Medium 3 16 57 41 19 41 8 10 74 33 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001361400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF315374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM058126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FN800719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000058234   ⟹   ENSRNOP00000055032
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl358,810,535 - 58,812,529 (-)Ensembl
Rnor_6.0 Ensembl360,811,210 - 60,813,869 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117216   ⟹   ENSRNOP00000088934
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl358,810,544 - 58,814,279 (-)Ensembl
RefSeq Acc Id: NM_001361400   ⟹   NP_001348329
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2358,810,535 - 58,813,185 (-)NCBI
RefSeq Acc Id: NM_001361401   ⟹   NP_001348330
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2358,810,535 - 58,813,185 (-)NCBI
RefSeq Acc Id: XM_039104098   ⟹   XP_038960026
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2358,810,535 - 58,813,095 (-)NCBI
Reference Sequences
RefSeq Acc Id: ENSRNOP00000055032   ⟸   ENSRNOT00000058234
RefSeq Acc Id: NP_001348330   ⟸   NM_001361401
- Peptide Label: precursor
- UniProtKB: Q499S2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001348329   ⟸   NM_001361400
- Peptide Label: precursor
- UniProtKB: Q499S2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960026   ⟸   XM_039104098
- Peptide Label: isoform X1
- UniProtKB: Q499S2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000088934   ⟸   ENSRNOT00000117216
Protein Domains
ATP-synt_C

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q71S46-F1-model_v2 AlphaFold Q71S46 1-142 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692162
Promoter ID:EPDNEW_R2672
Type:multiple initiation site
Name:Atp5mc3_1
Description:ATP synthase membrane subunit c locus 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0360,813,847 - 60,813,907EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620052 AgrOrtholog
BioCyc Gene G2FUF-49353 BioCyc
BioCyc Pathway PWY-7980 [ATP biosynthesis] BioCyc
Ensembl Genes ENSRNOG00000001596 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000055032 ENTREZGENE
  ENSRNOP00000055032.2 UniProtKB/TrEMBL
  ENSRNOP00000088934 ENTREZGENE
  ENSRNOP00000088934.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000058234 ENTREZGENE
  ENSRNOT00000058234.4 UniProtKB/TrEMBL
  ENSRNOT00000117216 ENTREZGENE
  ENSRNOT00000117216.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.20.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ATP_synth_F0_csu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATP_synth_F0_csu_DDCD_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATP_synth_F0_csu_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_proteolipid_c-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F/V-ATP_Csub_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 114630 ENTREZGENE
PANTHER PTHR10031 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ATP-synt_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atp5mc3 PhenoGen
PRINTS ATPASEC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ATPASE_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF81333 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt AT5G3_RAT UniProtKB/Swiss-Prot
  F7EW45_RAT UniProtKB/TrEMBL
  Q499S2 ENTREZGENE, UniProtKB/TrEMBL
  Q71S46 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-30 Atp5mc3  ATP synthase membrane subunit c locus 3  Atp5g3  ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-12-01 Atp5g3  ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)  Atp5g3  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-06-27 Atp5g3  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)  Atp5g3  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Atp5g3  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Atp5g3  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_product belongs to a subfamily of P-type ATPases 631958