Dync1i2 (dynein cytoplasmic 1 intermediate chain 2)

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Gene: Dync1i2 (dynein cytoplasmic 1 intermediate chain 2) Rattus norvegicus

Analyze

Symbol:

Dync1i2

Name:

dynein cytoplasmic 1 intermediate chain 2

RGD ID:

620174

Description:

Predicted to enable dynein heavy chain binding activity and dynein light chain binding activity. Predicted to contribute to plus-end-directed microtubule motor activity. Involved in brain development; cellular response to nerve growth factor stimulus; and negative regulation of neuron projection development. Located in cytoplasm. Orthologous to human DYNC1I2 (dynein cytoplasmic 1 intermediate chain 2); PARTICIPATES IN mitochondria transport pathway; phagocytosis pathway; vasopressin signaling pathway via receptor type 2; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dibromophenyl 2,4,5-tribromophenyl ether; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cytoplasmic dynein 1 intermediate chain 2; cytoplasmic dynein intermediate chain 2; DH IC-2; Dnci2; Dncic2; dynein intermediate chain 2, cytosolic; dynein, cytoplasmic, intermediate chain 2; dynein, cytoplasmic, intermediate polypeptide 2; MGC93277; oncofetal protein (OFP)

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DYNC1I2 (dynein cytoplasmic 1 intermediate chain 2)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Dync1i2 (dynein cytoplasmic 1 intermediate chain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Dync1i2 (dynein cytoplasmic 1 intermediate chain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DYNC1I2 (dynein cytoplasmic 1 intermediate chain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DYNC1I2 (dynein cytoplasmic 1 intermediate chain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Dync1i2 (dynein cytoplasmic 1 intermediate chain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DYNC1I2 (dynein cytoplasmic 1 intermediate chain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DYNC1I2 (dynein cytoplasmic 1 intermediate chain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dync1i2 (dynein cytoplasmic 1 intermediate chain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	DYNC1I2 (dynein cytoplasmic 1 intermediate chain 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Dync1i2 (dynein cytoplasmic 1 intermediate chain 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	dync1i2a (dynein, cytoplasmic 1, intermediate chain 2a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	dync1i2b (dynein, cytoplasmic 1, intermediate chain 2b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	dyci-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG46276	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG46277	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Sdic1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Sdic2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Sdic3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Sdic4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	sw	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PAC11	Alliance	DIOPT (PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	SdicA	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	56,033,882 - 56,085,080 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	56,033,917 - 56,085,080 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	59,431,604 - 59,482,847 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	68,015,213 - 68,066,454 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	65,777,439 - 65,828,519 (+)	NCBI	Rnor_WKY
Rnor_6.0	3	57,817,677 - 57,868,854 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	57,817,693 - 57,868,854 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	64,314,254 - 64,364,653 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	53,480,918 - 53,533,222 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	53,377,289 - 53,429,594 (+)	NCBI
Celera	3	55,581,617 - 55,633,089 (+)	NCBI		Celera
Cytogenetic Map	3	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

NEURODEVELOPMENTAL DISORDER WITH MICROCEPHALY AND STRUCTURAL BRAIN ANOMALIES (ISO)

NEURODEVELOPMENTAL DISORDER WITH MICROCEPHALY, HYPOTONIA, AND VARIABLE BRAIN ANOMALIES (ISO)

split hand-foot malformation 5 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (EXP)

2,6-dinitrotoluene (EXP)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3H-1,2-dithiole-3-thione (EXP)

aconitine (EXP)

acrolein (ISO)

alpha-pinene (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bexarotene (EXP)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (EXP)

caffeine (ISO)

CGP 52608 (ISO)

chloropicrin (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

gentamycin (EXP)

indometacin (ISO)

ivermectin (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

ozone (ISO)

paracetamol (EXP)

perfluorooctanoic acid (ISO)

rimonabant (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

testosterone (ISO)

tetrahydropalmatine (ISO)

titanium dioxide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

brain development (IEP)

cellular response to nerve growth factor stimulus (IEP)

microtubule-based movement (IEA,TAS)

negative regulation of neuron projection development (IMP)

transport along microtubule (IBA)

Cellular Component

centrosome (IEA,ISO)

cytoplasm (IDA)

cytoplasmic dynein complex (IBA,IEA)

dynein complex (ISO)

microtubule (IEA,ISO)

outer dynein arm (ISO)

vesicle (IEA,ISO,ISS)

Molecular Function

dynein heavy chain binding (IBA)

dynein light chain binding (IBA)

plus-end-directed microtubule motor activity (IBA)

protein binding (ISO)

protein-containing complex binding (IPI)

Molecular Pathway Annotations Click to see Annotation Detail View

mitochondria transport pathway (ISO)

phagocytosis pathway (IEA)

vasopressin signaling pathway via receptor type 2 (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Cytoplasmic dynein.	Allan VJ, Biochem Soc Trans. 2011 Oct;39(5):1169-78. doi: 10.1042/BST0391169.
2.	Live cell imaging reveals differential modifications to cytoplasmic dynein properties by phospho- and dephosphomimic mutations of the intermediate chain 2C S84.	Blasier KR, etal., J Neurosci Res. 2014 Sep;92(9):1143-54. doi: 10.1002/jnr.23388. Epub 2014 May 5.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
5.	Integrated proteomics identified novel activation of dynein IC2-GR-COX-1 signaling in neurofibromatosis type I (NF1) disease model cells.	Hirayama M, etal., Mol Cell Proteomics. 2013 May;12(5):1377-94. doi: 10.1074/mcp.M112.024802. Epub 2013 Jan 28.
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	Identification and developmental regulation of a neuron-specific subunit of cytoplasmic dynein.	Pfister KK, etal., Mol Biol Cell. 1996 Feb;7(2):331-43.
8.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Growth factor regulation of cytoplasmic dynein intermediate chain subunit expression preceding neurite extension.	Salata MW, etal., J Neurosci Res. 2001 Sep 1;65(5):408-16.
12.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
13.	Cytoplasmic dynein binds dynactin through a direct interaction between the intermediate chains and p150Glued.	Vaughan KT and Vallee RB, J Cell Biol 1995 Dec;131(6 Pt 1):1507-16.

Additional References at PubMed

PMID:20682791	PMID:21399614	PMID:21525035	PMID:23836931	PMID:25002582	PMID:27353389

Genomics

Comparative Map Data

Dync1i2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	56,033,882 - 56,085,080 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	56,033,917 - 56,085,080 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	59,431,604 - 59,482,847 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	68,015,213 - 68,066,454 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	65,777,439 - 65,828,519 (+)	NCBI	Rnor_WKY
Rnor_6.0	3	57,817,677 - 57,868,854 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	57,817,693 - 57,868,854 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	64,314,254 - 64,364,653 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	53,480,918 - 53,533,222 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	53,377,289 - 53,429,594 (+)	NCBI
Celera	3	55,581,617 - 55,633,089 (+)	NCBI		Celera
Cytogenetic Map	3	q22	NCBI

DYNC1I2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	171,687,469 - 171,750,158 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	2	171,687,409 - 171,750,158 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	172,543,979 - 172,606,668 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	172,252,228 - 172,313,165 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	172,369,488 - 172,430,426	NCBI
Celera	2	166,160,554 - 166,221,488 (+)	NCBI		Celera
Cytogenetic Map	2	q31.1	NCBI
HuRef	2	164,429,292 - 164,492,025 (+)	NCBI		HuRef
CHM1_1	2	172,550,676 - 172,613,534 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	172,164,878 - 172,227,564 (+)	NCBI		T2T-CHM13v2.0

Dync1i2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	71,041,999 - 71,093,647 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	71,042,050 - 71,093,647 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	71,211,676 - 71,263,303 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	71,211,706 - 71,263,303 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	71,050,070 - 71,101,351 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	71,012,852 - 71,064,133 (+)	NCBI		MGSCv36	mm8
Celera	2	72,870,734 - 72,922,164 (+)	NCBI		Celera
Cytogenetic Map	2	C2	NCBI
cM Map	2	42.38	NCBI

Dync1i2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955449	3,204,839 - 3,256,059 (-)	NCBI	ChiLan1.0	ChiLan1.0

DYNC1I2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2B	176,436,442 - 176,498,638 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	176,436,471 - 176,498,638 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2B	58,977,379 - 59,039,514 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

DYNC1I2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	36	16,103,480 - 16,163,232 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	36	16,103,751 - 16,162,215 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	36	16,113,452 - 16,173,236 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	36	16,224,349 - 16,284,203 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	36	16,224,362 - 16,284,112 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	36	16,311,937 - 16,372,018 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	36	16,311,893 - 16,371,695 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	36	16,414,689 - 16,474,496 (+)	NCBI		UU_Cfam_GSD_1.0

Dync1i2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	133,361,095 - 133,415,960 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936509	1,914,893 - 1,973,943 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936509	1,915,006 - 1,969,857 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DYNC1I2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	77,803,350 - 77,860,041 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	77,803,601 - 77,859,559 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	87,190,717 - 87,246,863 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DYNC1I2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	57,182,245 - 57,242,359 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	57,182,220 - 57,244,510 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	142,304,754 - 142,365,418 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dync1i2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624787	9,103,271 - 9,167,043 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624787	9,103,392 - 9,164,695 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Dync1i2
178 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	723
Count of miRNA genes:	157
Interacting mature miRNAs:	180
Transcripts:	ENSRNOT00000013400, ENSRNOT00000047243, ENSRNOT00000067729
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10861912	89878372	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	15005422	76927699	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	16954708	61954708	Rat
10450804	Scl70	Serum cholesterol level QTL 70	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
10450794	Scl69	Serum cholesterol level QTL 69	6.3	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
2302055	Pia30	Pristane induced arthritis QTL 30	3.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	3	27936919	72936919	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	28249687	73249687	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	28249687	73249687	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	28249687	73249687	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	28249687	73249687	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	28249687	73249687	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	28468571	73468571	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	28468571	73468571	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	30356773	98535386	Rat
61356	Bp37	Blood pressure QTL 37	3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	30684642	75684642	Rat
631647	Bp122	Blood pressure QTL 122	6.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	30684642	75684642	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
11565451	Bw177	Body weight QTL 177		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	3	31426403	70668733	Rat
11565452	Kidm57	Kidney mass QTL 57		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	31426403	70668733	Rat
12879866	Cm94	Cardiac mass QTL 94		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	31426403	70668733	Rat
12879867	Cm95	Cardiac mass QTL 95		0.047	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	31426403	70668733	Rat
12879868	Am6	Aortic mass QTL 6		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	31426403	70668733	Rat
2301400	Cm68	Cardiac mass QTL 68		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	31426403	70668733	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	33703347	61017857	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	78196190	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	104104347	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	38517803	83517803	Rat
2302276	Bw82	Body weight QTL 82	4.32		body mass (VT:0001259)	body weight (CMO:0000012)	3	39454637	62951183	Rat
1331777	Bw24	Body weight QTL 24	3.503		body mass (VT:0001259)	body weight (CMO:0000012)	3	39454637	89115240	Rat
1331795	Rf30	Renal function QTL 30	3.708		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	3	39454637	89115240	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	41874578	104104347	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	43827364	90905114	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	50437504	115638231	Rat
1582249	Bw77	Body weight QTL 77	3.2	0.0025	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	64655484	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	115665732	Rat
61377	Edpm3	Estrogen-dependent pituitary mass QTL 3	7.05	0.038	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	53184692	89878207	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	53781112	91609953	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	53781112	91609953	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	53781112	91609953	Rat

Markers in Region

RH134802

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	56,084,688 - 56,084,897 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	57,868,463 - 57,868,671	NCBI	Rnor6.0
Rnor_5.0	3	64,364,262 - 64,364,470	UniSTS	Rnor5.0
RGSC_v3.4	3	53,532,841 - 53,533,049	UniSTS	RGSC3.4
Celera	3	55,632,698 - 55,632,906	UniSTS
Cytogenetic Map	3	q21	UniSTS

RH135346

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	56,084,461 - 56,084,675 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	57,868,236 - 57,868,449	NCBI	Rnor6.0
Rnor_5.0	3	64,364,035 - 64,364,248	UniSTS	Rnor5.0
RGSC_v3.4	3	53,532,614 - 53,532,827	UniSTS	RGSC3.4
Celera	3	55,632,471 - 55,632,684	UniSTS
Cytogenetic Map	3	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001270624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001270625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_053880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC107446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC078764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB733957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM076575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM110655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U39044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U39045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U39046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X56145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000013400 ⟹ ENSRNOP00000013400

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	56,033,926 - 56,085,058 (+)	Ensembl
Rnor_6.0 Ensembl	3	57,817,693 - 57,868,854 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000047243 ⟹ ENSRNOP00000042414

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	56,033,917 - 56,085,080 (+)	Ensembl
Rnor_6.0 Ensembl	3	57,817,693 - 57,868,854 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000067729 ⟹ ENSRNOP00000060919

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	56,033,917 - 56,085,080 (+)	Ensembl
Rnor_6.0 Ensembl	3	57,817,693 - 57,868,854 (+)	Ensembl

RefSeq Acc Id:

NM_001270624 ⟹ NP_001257553

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	56,033,917 - 56,085,080 (+)	NCBI
Rnor_6.0	3	57,817,693 - 57,868,854 (+)	NCBI
Rnor_5.0	3	64,314,254 - 64,364,653 (+)	NCBI
Celera	3	55,581,617 - 55,633,089 (+)	NCBI

Sequence:

show sequence

TGCGTACTCCGCCCCAGGATGTGAGGTGTAGTTGTCCAGCTTTTGCCAAAGCGGAAACGCTTCG
GATCCCGCGGCCGGTGTGTCTCTATTTCACCGGTCAGATTCTGTTTTGCAAAAGGTAAGTCACG
GAAAGGGCGCCCTTCCGTGCCGGGCGGTAAAGATTCTGTTTTTGTGGGAGACCGCGTCGGCGAA
GTCATTTGTCCCTTGGCTCACGCCGTAGTGGCCGCCGCCCATCCCTCTTTGTGTGCTTGGGACG
CCAGGGATCTGCGGTGGCGACAGTTGGAGAGGGACGTTCCCGGAAAGTTACCGGTCAGAAGAAA
CTATCTCCACATCACCACCTGACAGGTCACAACCATGTCAGACAAAAGTGAATTAAAAGCTGAG
TTGGAACGTAAGAAGCAACGGTTGGCCCAAATCAGAGAAGAAAAGAAGAGGAAAGAAGAGGAAA
GGAAAAAAAAAGAAACTGATCAGAAGAAGGAAGCTGCAGTCTCTGTGCAGGAAGAGTCTGACCT
TGAAAAGAAGAGAAGAGAAGCCGAAGCCTTGCTTCAGAGCATGGGGCTAACTACAGACTCCCCA
ATTGTCCCTCCTCCCATGTCTCCATCCTCCAAGTCGGTGAGCACGCCAAGTGAAGCTGGAAGCC
AGGACTCTGGAGATGGCGCCGTGGGATCTAGGACGCTGCACTGGGATACAGATCCATCAGCTCT
TCAGCTCCACTCAGATTCCGATTTGGGACGAGGACCTATTAAACTTGGAATGGCCAAAATTACT
CAAGTCGACTTTCCCCCTCGAGAAATCGTCACATATACAAAGGAAACTCAGACCCCGGTTACAG
CTCAACCCAAAGAAGATGAGGAGGAGGAAGATGACGTAGCAGCTCCTAAGCCTCCTGTTGAACC
TGAAGAAGAGAAAATTTTAAAAAAAGACGAAGAGAATGATAGCAAAGCTCCCCCTCATGAACTA
ACTGAAGAAGAAAAGCAACAAATTTTACACTCAGAAGAATTTTTAAGTTTCTTTGACCATTCTA
CAAGAATTGTAGAAAGAGCCCTCTCTGAGCAGATTAACATCTTCTTTGACTACAGTGGGAGAGA
TTTGGAAGACAAAGAAGGGGAGATTCAAGCAGGTGCTAAGCTGTCATTAAATCGACAGTTTTTT
GATGAGCGTTGGTCAAAGCATCGAGTTGTTAGTTGCTTGGATTGGTCATCCCAGTATCCAGAAT
TACTTGTGGCTTCCTATAATAACAATGAAGAGGCTCCTCATGAGCCTGATGGTGTGGCCCTCGT
ATGGAATATGAAGTACAAGAAAACTACCCCAGAGTACGTGTTCCACTGCCAGTCAGCTGTAATG
TCTGCTACATTTGCAAAATTTCATCCAAATCTTGTTGTTGGAGGTACATACTCAGGCCAAATTG
TGCTTTGGGATAACCGTAGCAATAAAAGAACCCCCGTCCAGAGAACACCACTGTCAGCTGCTGC
ACACACACACCCTGTCTACTGTGTAAATGTTGTTGGAACACAAAATGCTCATAATCTGATTAGC
ATCTCTACTGATGGAAAAATTTGCTCCTGGAGCTTAGACATGCTTTCCCATCCACAGGATAGCA
TGGAGTTGGTTCATAAACAGTCAAAGGCAGTAGCTGTAACATCTATGTCTTTCCCTGTTGGAGA
CGTCAACAACTTTGTTGTGGGCAGTGAAGAAGGTTCTGTGTATACAGCATGCCGCCATGGCAGC
AAAGCCGGAATCAGTGAGATGTTTGAGGGACACCAGGGACCCATCACGGGAATCCACTGTCACG
CAGCTGTTGGCGCAGTAGACTTCTCACATCTGTTCGTCACTTCGTCTTTTGACTGGACAGTAAA
ACTTTGGACAACTAAGAATAACAAGCCTTTGTACTCATTTGAAGATAATTCAGACTATGTCTAT
GATGTTATGTGGTCACCCACCCACCCAGCCCTGTTTGCCTGTGTGGATGGCATGGGGAGACTGG
ATCTATGGAATCTCAACAATGACACAGAGGTGCCGACTGCCAGCATTTCTGTGGAGGGCAACCC
TGCCCTTAACCGTGTGAGATGGACCCACTCGGGAAGAGAGATCGCCGTGGGTGATTCTGAAGGA
CAGATTGTCATATATGATGTGGGCGAGCAGATCGCTGTTCCCCGAAATGATGAATGGGCAAGAT
TTGGCCGAACACTCGCAGAGATTAACGCAAGCCGAGCTGATGCAGAGGAGGAAGCGGCTACCCG
GATTCCTGCCTAGGCCTGGAGGGTGGCCGTAGCCTTATCGAGTCTGGCAAAGAGGATGAAGTAG
ATCCTAAACTATTTGCATGCTTCTGATTAAACGAGAATTAAAAGAAAACTCCATGGATAGACTG
GGTTTAATACAGGAAGCAAAGCTTACCGAGCCCTTTTATATTCTATTCCCTTTGCTTTGGATTG
GTGTCATTTTTAATACAGCTGACAACTTTACAGAATGCAGCCTTTTCTGAATTCTAACACATGG
GTGTATATTGTTAATTATTCTTTTGGATTCTTTTGAACTTGTACTACTATATATAATTATTTCT
AAAGCACAGACTAAGTGAGTTCTGCATATTTCTAAAGAGCCACAGTCCCTTATTATGCAATACA
GTACATGGGTCCTTGTCAGTTATGTCCTCACTGCCCTGAGTGAGTAGGAACATTGTTCTTAGTG
CCAGCATGCATTCGCCTACCTGTTTTAAGTTTCATGTTGATGCCGTTTTCCTTCTCTATAGTTC
ATGGTAGTTATCTATAAATAAAAACAAATATGTGCTAACTTTTCAAATTTT

hide sequence

RefSeq Acc Id:

NM_001270625 ⟹ NP_001257554

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	56,033,917 - 56,085,080 (+)	NCBI
Rnor_6.0	3	57,817,693 - 57,868,854 (+)	NCBI
Rnor_5.0	3	64,314,254 - 64,364,653 (+)	NCBI
Celera	3	55,581,617 - 55,633,089 (+)	NCBI

Sequence:

show sequence

TGCGTACTCCGCCCCAGGATGTGAGGTGTAGTTGTCCAGCTTTTGCCAAAGCGGAAACGCTTCG
GATCCCGCGGCCGGTGTGTCTCTATTTCACCGGTCAGATTCTGTTTTGCAAAAGGTAAGTCACG
GAAAGGGCGCCCTTCCGTGCCGGGCGGTAAAGATTCTGTTTTTGTGGGAGACCGCGTCGGCGAA
GTCATTTGTCCCTTGGCTCACGCCGTAGTGGCCGCCGCCCATCCCTCTTTGTGTGCTTGGGACG
CCAGGGATCTGCGGTGGCGACAGTTGGAGAGGGACGTTCCCGGAAAGTTACCGGTCAGAAGAAA
CTATCTCCACATCACCACCTGACAGGTCACAACCATGTCAGACAAAAGTGAATTAAAAGCTGAG
TTGGAACGTAAGAAGCAACGGTTGGCCCAAATCAGAGAAGAAAAGAAGAGGAAAGAAGAGGAAA
GGAAAAAAAAAGAAACTGATCAGAAGAAGGAAGCTGCAGTCTCTGTGCAGGAAGAGTCTGACCT
TGAAAAGAAGAGAAGAGAAGCCGAAGCCTTGCTTCAGAGCATGGGGCTAACTACAGACTCCCCA
ATTGTCCCTCCTCCCATGTCTCCATCCTCCAAGTCGGTGAGCACGCCAAGTGAAGCTGGAAGCC
AGGACTCTGGAGATGGCGCCGTGGGATCTAGACGAGGACCTATTAAACTTGGAATGGCCAAAAT
TACTCAAGTCGACTTTCCCCCTCGAGAAATCGTCACATATACAAAGGAAACTCAGACCCCGGTT
ACAGCTCAACCCAAAGAAGATGAGGAGGAGGAAGATGACGTAGCAGCTCCTAAGCCTCCTGTTG
AACCTGAAGAAGAGAAAATTTTAAAAAAAGACGAAGAGAATGATAGCAAAGCTCCCCCTCATGA
ACTAACTGAAGAAGAAAAGCAACAAATTTTACACTCAGAAGAATTTTTAAGTTTCTTTGACCAT
TCTACAAGAATTGTAGAAAGAGCCCTCTCTGAGCAGATTAACATCTTCTTTGACTACAGTGGGA
GAGATTTGGAAGACAAAGAAGGGGAGATTCAAGCAGGTGCTAAGCTGTCATTAAATCGACAGTT
TTTTGATGAGCGTTGGTCAAAGCATCGAGTTGTTAGTTGCTTGGATTGGTCATCCCAGTATCCA
GAATTACTTGTGGCTTCCTATAATAACAATGAAGAGGCTCCTCATGAGCCTGATGGTGTGGCCC
TCGTATGGAATATGAAGTACAAGAAAACTACCCCAGAGTACGTGTTCCACTGCCAGTCAGCTGT
AATGTCTGCTACATTTGCAAAATTTCATCCAAATCTTGTTGTTGGAGGTACATACTCAGGCCAA
ATTGTGCTTTGGGATAACCGTAGCAATAAAAGAACCCCCGTCCAGAGAACACCACTGTCAGCTG
CTGCACACACACACCCTGTCTACTGTGTAAATGTTGTTGGAACACAAAATGCTCATAATCTGAT
TAGCATCTCTACTGATGGAAAAATTTGCTCCTGGAGCTTAGACATGCTTTCCCATCCACAGGAT
AGCATGGAGTTGGTTCATAAACAGTCAAAGGCAGTAGCTGTAACATCTATGTCTTTCCCTGTTG
GAGACGTCAACAACTTTGTTGTGGGCAGTGAAGAAGGTTCTGTGTATACAGCATGCCGCCATGG
CAGCAAAGCCGGAATCAGTGAGATGTTTGAGGGACACCAGGGACCCATCACGGGAATCCACTGT
CACGCAGCTGTTGGCGCAGTAGACTTCTCACATCTGTTCGTCACTTCGTCTTTTGACTGGACAG
TAAAACTTTGGACAACTAAGAATAACAAGCCTTTGTACTCATTTGAAGATAATTCAGACTATGT
CTATGATGTTATGTGGTCACCCACCCACCCAGCCCTGTTTGCCTGTGTGGATGGCATGGGGAGA
CTGGATCTATGGAATCTCAACAATGACACAGAGGTGCCGACTGCCAGCATTTCTGTGGAGGGCA
ACCCTGCCCTTAACCGTGTGAGATGGACCCACTCGGGAAGAGAGATCGCCGTGGGTGATTCTGA
AGGACAGATTGTCATATATGATGTGGGCGAGCAGATCGCTGTTCCCCGAAATGATGAATGGGCA
AGATTTGGCCGAACACTCGCAGAGATTAACGCAAGCCGAGCTGATGCAGAGGAGGAAGCGGCTA
CCCGGATTCCTGCCTAGGCCTGGAGGGTGGCCGTAGCCTTATCGAGTCTGGCAAAGAGGATGAA
GTAGATCCTAAACTATTTGCATGCTTCTGATTAAACGAGAATTAAAAGAAAACTCCATGGATAG
ACTGGGTTTAATACAGGAAGCAAAGCTTACCGAGCCCTTTTATATTCTATTCCCTTTGCTTTGG
ATTGGTGTCATTTTTAATACAGCTGACAACTTTACAGAATGCAGCCTTTTCTGAATTCTAACAC
ATGGGTGTATATTGTTAATTATTCTTTTGGATTCTTTTGAACTTGTACTACTATATATAATTAT
TTCTAAAGCACAGACTAAGTGAGTTCTGCATATTTCTAAAGAGCCACAGTCCCTTATTATGCAA
TACAGTACATGGGTCCTTGTCAGTTATGTCCTCACTGCCCTGAGTGAGTAGGAACATTGTTCTT
AGTGCCAGCATGCATTCGCCTACCTGTTTTAAGTTTCATGTTGATGCCGTTTTCCTTCTCTATA
GTTCATGGTAGTTATCTATAAATAAAAACAAATATGTGCTAACTTTTCAAATTTT

hide sequence

RefSeq Acc Id:

NM_053880 ⟹ NP_446332

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	56,033,917 - 56,085,080 (+)	NCBI
Rnor_6.0	3	57,817,693 - 57,868,854 (+)	NCBI
Rnor_5.0	3	64,314,254 - 64,364,653 (+)	NCBI
RGSC_v3.4	3	53,480,918 - 53,533,222 (+)	RGD
Celera	3	55,581,617 - 55,633,089 (+)	NCBI

Sequence:

show sequence

TGCGTACTCCGCCCCAGGATGTGAGGTGTAGTTGTCCAGCTTTTGCCAAAGCGGAAACGCTTCG
GATCCCGCGGCCGGTGTGTCTCTATTTCACCGGTCAGATTCTGTTTTGCAAAAGGTAAGTCACG
GAAAGGGCGCCCTTCCGTGCCGGGCGGTAAAGATTCTGTTTTTGTGGGAGACCGCGTCGGCGAA
GTCATTTGTCCCTTGGCTCACGCCGTAGTGGCCGCCGCCCATCCCTCTTTGTGTGCTTGGGACG
CCAGGGATCTGCGGTGGCGACAGTTGGAGAGGGACGTTCCCGGAAAGTTACCGGTCAGAAGAAA
CTATCTCCACATCACCACCTGACAGGTCACAACCATGTCAGACAAAAGTGAATTAAAAGCTGAG
TTGGAACGTAAGAAGCAACGGTTGGCCCAAATCAGAGAAGAAAAGAAGAGGAAAGAAGAGGAAA
GGAAAAAAAAAGAAACTGATCAGAAGAAGGAAGCTGCAGTCTCTGTGCAGGAAGAGTCTGACCT
TGAAAAGAAGAGAAGAGAAGCCGAAGCCTTGCTTCAGAGCATGGGGCTAACTACAGACTCCCCA
ATTGTTTTTTCTGAGCACTGGGTCCCTCCTCCCATGTCTCCATCCTCCAAGTCGGTGAGCACGC
CAAGTGAAGCTGGAAGCCAGGACTCTGGAGATGGCGCCGTGGGATCTAGGACGCTGCACTGGGA
TACAGATCCATCAGCTCTTCAGCTCCACTCAGATTCCGATTTGGGACGAGGACCTATTAAACTT
GGAATGGCCAAAATTACTCAAGTCGACTTTCCCCCTCGAGAAATCGTCACATATACAAAGGAAA
CTCAGACCCCGGTTACAGCTCAACCCAAAGAAGATGAGGAGGAGGAAGATGACGTAGCAGCTCC
TAAGCCTCCTGTTGAACCTGAAGAAGAGAAAATTTTAAAAAAAGACGAAGAGAATGATAGCAAA
GCTCCCCCTCATGAACTAACTGAAGAAGAAAAGCAACAAATTTTACACTCAGAAGAATTTTTAA
GTTTCTTTGACCATTCTACAAGAATTGTAGAAAGAGCCCTCTCTGAGCAGATTAACATCTTCTT
TGACTACAGTGGGAGAGATTTGGAAGACAAAGAAGGGGAGATTCAAGCAGGTGCTAAGCTGTCA
TTAAATCGACAGTTTTTTGATGAGCGTTGGTCAAAGCATCGAGTTGTTAGTTGCTTGGATTGGT
CATCCCAGTATCCAGAATTACTTGTGGCTTCCTATAATAACAATGAAGAGGCTCCTCATGAGCC
TGATGGTGTGGCCCTCGTATGGAATATGAAGTACAAGAAAACTACCCCAGAGTACGTGTTCCAC
TGCCAGTCAGCTGTAATGTCTGCTACATTTGCAAAATTTCATCCAAATCTTGTTGTTGGAGGTA
CATACTCAGGCCAAATTGTGCTTTGGGATAACCGTAGCAATAAAAGAACCCCCGTCCAGAGAAC
ACCACTGTCAGCTGCTGCACACACACACCCTGTCTACTGTGTAAATGTTGTTGGAACACAAAAT
GCTCATAATCTGATTAGCATCTCTACTGATGGAAAAATTTGCTCCTGGAGCTTAGACATGCTTT
CCCATCCACAGGATAGCATGGAGTTGGTTCATAAACAGTCAAAGGCAGTAGCTGTAACATCTAT
GTCTTTCCCTGTTGGAGACGTCAACAACTTTGTTGTGGGCAGTGAAGAAGGTTCTGTGTATACA
GCATGCCGCCATGGCAGCAAAGCCGGAATCAGTGAGATGTTTGAGGGACACCAGGGACCCATCA
CGGGAATCCACTGTCACGCAGCTGTTGGCGCAGTAGACTTCTCACATCTGTTCGTCACTTCGTC
TTTTGACTGGACAGTAAAACTTTGGACAACTAAGAATAACAAGCCTTTGTACTCATTTGAAGAT
AATTCAGACTATGTCTATGATGTTATGTGGTCACCCACCCACCCAGCCCTGTTTGCCTGTGTGG
ATGGCATGGGGAGACTGGATCTATGGAATCTCAACAATGACACAGAGGTGCCGACTGCCAGCAT
TTCTGTGGAGGGCAACCCTGCCCTTAACCGTGTGAGATGGACCCACTCGGGAAGAGAGATCGCC
GTGGGTGATTCTGAAGGACAGATTGTCATATATGATGTGGGCGAGCAGATCGCTGTTCCCCGAA
ATGATGAATGGGCAAGATTTGGCCGAACACTCGCAGAGATTAACGCAAGCCGAGCTGATGCAGA
GGAGGAAGCGGCTACCCGGATTCCTGCCTAGGCCTGGAGGGTGGCCGTAGCCTTATCGAGTCTG
GCAAAGAGGATGAAGTAGATCCTAAACTATTTGCATGCTTCTGATTAAACGAGAATTAAAAGAA
AACTCCATGGATAGACTGGGTTTAATACAGGAAGCAAAGCTTACCGAGCCCTTTTATATTCTAT
TCCCTTTGCTTTGGATTGGTGTCATTTTTAATACAGCTGACAACTTTACAGAATGCAGCCTTTT
CTGAATTCTAACACATGGGTGTATATTGTTAATTATTCTTTTGGATTCTTTTGAACTTGTACTA
CTATATATAATTATTTCTAAAGCACAGACTAAGTGAGTTCTGCATATTTCTAAAGAGCCACAGT
CCCTTATTATGCAATACAGTACATGGGTCCTTGTCAGTTATGTCCTCACTGCCCTGAGTGAGTA
GGAACATTGTTCTTAGTGCCAGCATGCATTCGCCTACCTGTTTTAAGTTTCATGTTGATGCCGT
TTTCCTTCTCTATAGTTCATGGTAGTTATCTATAAATAAAAACAAATATGTGCTAACTTTTCAA
ATTTT

hide sequence

RefSeq Acc Id:

XM_006234344 ⟹ XP_006234406

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	56,033,882 - 56,084,766 (+)	NCBI
Rnor_6.0	3	57,817,678 - 57,868,671 (+)	NCBI
Rnor_5.0	3	64,314,254 - 64,364,653 (+)	NCBI

Sequence:

show sequence

AGTTCTCTGGGGTATTGCGTACTCCGCCCCAGGATGTGAGGTGTAGTTGTCCAGCTTTTGCCAA
AGCGGAAACGCTTCGGATCCCGCGGCCGGTGTGTCTCTATTTCACCGGTCAGATTCTGTTTTGC
AAAAGGTCACAACCATGTCAGACAAAAGTGAATTAAAAGCTGAGTTGGAACGTAAGAAGCAACG
GTTGGCCCAAATCAGAGAAGAAAAGAAGAGGAAAGAAGAGGAAAGGAAAAAAAAAGAAACTGAT
CAGAAGAAGGAAGCTGCAGTCTCTGTGCAGGAAGAGTCTGACCTTGAAAAGAAGAGAAGAGAAG
CCGAAGCCTTGCTTCAGAGCATGGGGCTAACTACAGACTCCCCAATTGTCCCTCCTCCCATGTC
TCCATCCTCCAAGTCGGTGAGCACGCCAAGTGAAGCTGGAAGCCAGGACTCTGGAGATGGCGCC
GTGGGATCTAGGACGCTGCACTGGGATACAGATCCATCAGCTCTTCAGCTCCACTCAGATTCCG
ATTTGGGACGAGGACCTATTAAACTTGGAATGGCCAAAATTACTCAAGTCGACTTTCCCCCTCG
AGAAATCGTCACATATACAAAGGAAACTCAGACCCCGGTTACAGCTCAACCCAAAGAAGATGAG
GAGGAGGAAGATGACGTAGCAGCTCCTAAGCCTCCTGTTGAACCTGAAGAAGAGAAAATTTTAA
AAAAAGACGAAGAGAATGATAGCAAAGCTCCCCCTCATGAACTAACTGAAGAAGAAAAGCAACA
AATTTTACACTCAGAAGAATTTTTAAGTTTCTTTGACCATTCTACAAGAATTGTAGAAAGAGCC
CTCTCTGAGCAGATTAACATCTTCTTTGACTACAGTGGGAGAGATTTGGAAGACAAAGAAGGGG
AGATTCAAGCAGGTGCTAAGCTGTCATTAAATCGACAGTTTTTTGATGAGCGTTGGTCAAAGCA
TCGAGTTGTTAGTTGCTTGGATTGGTCATCCCAGTATCCAGAATTACTTGTGGCTTCCTATAAT
AACAATGAAGAGGCTCCTCATGAGCCTGATGGTGTGGCCCTCGTATGGAATATGAAGTACAAGA
AAACTACCCCAGAGTACGTGTTCCACTGCCAGTCAGCTGTAATGTCTGCTACATTTGCAAAATT
TCATCCAAATCTTGTTGTTGGAGGTACATACTCAGGCCAAATTGTGCTTTGGGATAACCGTAGC
AATAAAAGAACCCCCGTCCAGAGAACACCACTGTCAGCTGCTGCACACACACACCCTGTCTACT
GTGTAAATGTTGTTGGAACACAAAATGCTCATAATCTGATTAGCATCTCTACTGATGGAAAAAT
TTGCTCCTGGAGCTTAGACATGCTTTCCCATCCACAGGATAGCATGGAGTTGGTTCATAAACAG
TCAAAGGCAGTAGCTGTAACATCTATGTCTTTCCCTGTTGGAGACGTCAACAACTTTGTTGTGG
GCAGTGAAGAAGGTTCTGTGTATACAGCATGCCGCCATGGCAGCAAAGCCGGAATCAGTGAGAT
GTTTGAGGGACACCAGGGACCCATCACGGGAATCCACTGTCACGCAGCTGTTGGCGCAGTAGAC
TTCTCACATCTGTTCGTCACTTCGTCTTTTGACTGGACAGTAAAACTTTGGACAACTAAGAATA
ACAAGCCTTTGTACTCATTTGAAGATAATTCAGACTATGTCTATGATGTTATGTGGTCACCCAC
CCACCCAGCCCTGTTTGCCTGTGTGGATGGCATGGGGAGACTGGATCTATGGAATCTCAACAAT
GACACAGAGGTGCCGACTGCCAGCATTTCTGTGGAGGGCAACCCTGCCCTTAACCGTGTGAGAT
GGACCCACTCGGGAAGAGAGATCGCCGTGGGTGATTCTGAAGGACAGATTGTCATATATGATGT
GGGCGAGCAGATCGCTGTTCCCCGAAATGATGAATGGGCAAGATTTGGCCGAACACTCGCAGAG
ATTAACGCAAGCCGAGCTGATGCAGAGGAGGAAGCGGCTACCCGGATTCCTGCCTAGGCCTGGA
GGGTGGCCGTAGCCTTATCGAGTCTGGCAAAGAGGATGAAGTAGATCCTAAACTATTTGCATGC
TTCTGATTAAACGAGAATTAAAAGAAAACTCCATGGATAGACTGGGTTTAATACAGGAAGCAAA
GCTTACCGAGCCCTTTTATATTCTATTCCCTTTGCTTTGGATTGGTGTCATTTTTAATACAGCT
GACAACTTTACAGAATGCAGCCTTTTCTGAATTCTAACACATGGGTGTATATTGTTAATTATTC
TTTTGGATTCTTTTGAACTTGTACTACTATATATAATTATTTCTAAAGCACAGACTAAGTGAGT
TCTGCATATTTCTAAAGAGCCACAGTCCCTTATTATGCAA

hide sequence

RefSeq Acc Id:

XM_006234346 ⟹ XP_006234408

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	56,033,883 - 56,084,766 (+)	NCBI
Rnor_6.0	3	57,817,679 - 57,868,671 (+)	NCBI
Rnor_5.0	3	64,314,254 - 64,364,653 (+)	NCBI

Sequence:

show sequence

GTTCTCTGGGGTATTGCGTACTCCGCCCCAGGATGTGAGGTGTAGTTGTCCAGCTTTTGCCAAA
GCGGAAACGCTTCGGATCCCGCGGCCGGTGTGTCTCTATTTCACCGGTCAGATTCTGTTTTGCA
AAAGGTCACAACCATGTCAGACAAAAGTGAATTAAAAGCTGAGTTGGAACGTAAGAAGCAACGG
TTGGCCCAAATCAGAGAAGAAAAGAAGAGGAAAGAAGAGGAAAGGAAAAAAAAAGAAACTGATC
AGAAGAAGGAAGCTGCAGTCTCTGTGCAGGAAGAGTCTGACCTTGAAAAGAAGAGAAGAGAAGC
CGAAGCCTTGCTTCAGAGCATGGGGCTAACTACAGACTCCCCAATTGTCCCTCCTCCCATGTCT
CCATCCTCCAAGTCGGTGAGCACGCCAAGTGAAGCTGGAAGCCAGGACTCTGGAGATGGCGCCG
TGGGATCTAGACGAGGACCTATTAAACTTGGAATGGCCAAAATTACTCAAGTCGACTTTCCCCC
TCGAGAAATCGTCACATATACAAAGGAAACTCAGACCCCGGTTACAGCTCAACCCAAAGAAGAT
GAGGAGGAGGAAGATGACGTAGCAGCTCCTAAGCCTCCTGTTGAACCTGAAGAAGAGAAAATTT
TAAAAAAAGACGAAGAGAATGATAGCAAAGCTCCCCCTCATGAACTAACTGAAGAAGAAAAGCA
ACAAATTTTACACTCAGAAGAATTTTTAAGTTTCTTTGACCATTCTACAAGAATTGTAGAAAGA
GCCCTCTCTGAGCAGATTAACATCTTCTTTGACTACAGTGGGAGAGATTTGGAAGACAAAGAAG
GGGAGATTCAAGCAGGTGCTAAGCTGTCATTAAATCGACAGTTTTTTGATGAGCGTTGGTCAAA
GCATCGAGTTGTTAGTTGCTTGGATTGGTCATCCCAGTATCCAGAATTACTTGTGGCTTCCTAT
AATAACAATGAAGAGGCTCCTCATGAGCCTGATGGTGTGGCCCTCGTATGGAATATGAAGTACA
AGAAAACTACCCCAGAGTACGTGTTCCACTGCCAGTCAGCTGTAATGTCTGCTACATTTGCAAA
ATTTCATCCAAATCTTGTTGTTGGAGGTACATACTCAGGCCAAATTGTGCTTTGGGATAACCGT
AGCAATAAAAGAACCCCCGTCCAGAGAACACCACTGTCAGCTGCTGCACACACACACCCTGTCT
ACTGTGTAAATGTTGTTGGAACACAAAATGCTCATAATCTGATTAGCATCTCTACTGATGGAAA
AATTTGCTCCTGGAGCTTAGACATGCTTTCCCATCCACAGGATAGCATGGAGTTGGTTCATAAA
CAGTCAAAGGCAGTAGCTGTAACATCTATGTCTTTCCCTGTTGGAGACGTCAACAACTTTGTTG
TGGGCAGTGAAGAAGGTTCTGTGTATACAGCATGCCGCCATGGCAGCAAAGCCGGAATCAGTGA
GATGTTTGAGGGACACCAGGGACCCATCACGGGAATCCACTGTCACGCAGCTGTTGGCGCAGTA
GACTTCTCACATCTGTTCGTCACTTCGTCTTTTGACTGGACAGTAAAACTTTGGACAACTAAGA
ATAACAAGCCTTTGTACTCATTTGAAGATAATTCAGACTATGTCTATGATGTTATGTGGTCACC
CACCCACCCAGCCCTGTTTGCCTGTGTGGATGGCATGGGGAGACTGGATCTATGGAATCTCAAC
AATGACACAGAGGTGCCGACTGCCAGCATTTCTGTGGAGGGCAACCCTGCCCTTAACCGTGTGA
GATGGACCCACTCGGGAAGAGAGATCGCCGTGGGTGATTCTGAAGGACAGATTGTCATATATGA
TGTGGGCGAGCAGATCGCTGTTCCCCGAAATGATGAATGGGCAAGATTTGGCCGAACACTCGCA
GAGATTAACGCAAGCCGAGCTGATGCAGAGGAGGAAGCGGCTACCCGGATTCCTGCCTAGGCCT
GGAGGGTGGCCGTAGCCTTATCGAGTCTGGCAAAGAGGATGAAGTAGATCCTAAACTATTTGCA
TGCTTCTGATTAAACGAGAATTAAAAGAAAACTCCATGGATAGACTGGGTTTAATACAGGAAGC
AAAGCTTACCGAGCCCTTTTATATTCTATTCCCTTTGCTTTGGATTGGTGTCATTTTTAATACA
GCTGACAACTTTACAGAATGCAGCCTTTTCTGAATTCTAACACATGGGTGTATATTGTTAATTA
TTCTTTTGGATTCTTTTGAACTTGTACTACTATATATAATTATTTCTAAAGCACAGACTAAGTG
AGTTCTGCATATTTCTAAAGAGCCACAGTCCCTTATTATGCAA

hide sequence

RefSeq Acc Id:

XM_017591432 ⟹ XP_017446921

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	56,033,918 - 56,084,766 (+)	NCBI
Rnor_6.0	3	57,817,677 - 57,868,671 (+)	NCBI

Sequence:

show sequence

TAGTTCTCTGGGGTATTGCGTACTCCGCCCCAGGATGTGAGGTGTAGTTGTCCAGCTTTTGCCA
AAGCGGAAACGCTTCGGATCCCGCGGCCGGTGTGTCTCTATTTCACCGGTCAGATTCTGTTTTG
CAAAAGGGATCTGCGGTGGCGACAGTTGGAGAGGGACGTTCCCGGAAAGTTACCGGTCAGAAGA
AACTATCTCCACATCACCACCTGACAGGTCACAACCATGTCAGACAAAAGTGAATTAAAAGCTG
AGTTGGAACGTAAGAAGCAACGGTTGGCCCAAATCAGAGAAGAAAAGAAGAGGAAAGAAGAGGA
AAGGAAAAAAAAAGAAACTGATCAGAAGAAGGAAGCTGCAGTCTCTGTGCAGGAAGAGTCTGAC
CTTGAAAAGAAGAGAAGAGAAGCCGAAGCCTTGCTTCAGAGCATGGGGCTAACTACAGACTCCC
CAATTGTTTTTTCTGAGCACTGGGTCCCTCCTCCCATGTCTCCATCCTCCAAGTCGGTGAGCAC
GCCAAGTGAAGCTGGAAGCCAGGACTCTGGAGATGGCGCCGTGGGATCTAGGACGCTGCACTGG
GATACAGATCCATCAGCTCTTCAGCTCCACTCAGATTCCGATTTGGGACGAGGACCTATTAAAC
TTGGAATGGCCAAAATTACTCAAGTCGACTTTCCCCCTCGAGAAATCGTCACATATACAAAGGA
AACTCAGACCCCGGTTACAGCTCAACCCAAAGAAGATGAGGAGGAGGAAGATGACGTAGCAGCT
CCTAAGCCTCCTGTTGAACCTGAAGAAGAGAAAATTTTAAAAAAAGACGAAGAGAATGATAGCA
AAGCTCCCCCTCATGAACTAACTGAAGAAGAAAAGCAACAAATTTTACACTCAGAAGAATTTTT
AAGTTTCTTTGACCATTCTACAAGAATTGTAGAAAGAGCCCTCTCTGAGCAGATTAACATCTTC
TTTGACTACAGTGGGAGAGATTTGGAAGACAAAGAAGGGGAGATTCAAGCAGGTGCTAAGCTGT
CATTAAATCGACAGTTTTTTGATGAGCGTTGGTCAAAGCATCGAGTTGTTAGTTGCTTGGATTG
GTCATCCCAGTATCCAGAATTACTTGTGGCTTCCTATAATAACAATGAAGAGGCTCCTCATGAG
CCTGATGGTGTGGCCCTCGTATGGAATATGAAGTACAAGAAAACTACCCCAGAGTACGTGTTCC
ACTGCCAGTCAGCTGTAATGTCTGCTACATTTGCAAAATTTCATCCAAATCTTGTTGTTGGAGG
TACATACTCAGGCCAAATTGTGCTTTGGGATAACCGTAGCAATAAAAGAACCCCCGTCCAGAGA
ACACCACTGTCAGCTGCTGCACACACACACCCTGTCTACTGTGTAAATGTTGTTGGAACACAAA
ATGCTCATAATCTGATTAGCATCTCTACTGATGGAAAAATTTGCTCCTGGAGCTTAGACATGCT
TTCCCATCCACAGGATAGCATGGAGTTGGTTCATAAACAGTCAAAGGCAGTAGCTGTAACATCT
ATGTCTTTCCCTGTTGGAGACGTCAACAACTTTGTTGTGGGCAGTGAAGAAGGTTCTGTGTATA
CAGCATGCCGCCATGGCAGCAAAGCCGGAATCAGTGAGATGTTTGAGGGACACCAGGGACCCAT
CACGGGAATCCACTGTCACGCAGCTGTTGGCGCAGTAGACTTCTCACATCTGTTCGTCACTTCG
TCTTTTGACTGGACAGTAAAACTTTGGACAACTAAGAATAACAAGCCTTTGTACTCATTTGAAG
ATAATTCAGACTATGTCTATGATGTTATGTGGTCACCCACCCACCCAGCCCTGTTTGCCTGTGT
GGATGGCATGGGGAGACTGGATCTATGGAATCTCAACAATGACACAGAGGTGCCGACTGCCAGC
ATTTCTGTGGAGGGCAACCCTGCCCTTAACCGTGTGAGATGGACCCACTCGGGAAGAGAGATCG
CCGTGGGTGATTCTGAAGGACAGATTGTCATATATGATGTGGGCGAGCAGATCGCTGTTCCCCG
AAATGATGAATGGGCAAGATTTGGCCGAACACTCGCAGAGATTAACGCAAGCCGAGCTGATGCA
GAGGAGGAAGCGGCTACCCGGATTCCTGCCTAGGCCTGGAGGGTGGCCGTAGCCTTATCGAGTC
TGGCAAAGAGGATGAAGTAGATCCTAAACTATTTGCATGCTTCTGATTAAACGAGAATTAAAAG
AAAACTCCATGGATAGACTGGGTTTAATACAGGAAGCAAAGCTTACCGAGCCCTTTTATATTCT
ATTCCCTTTGCTTTGGATTGGTGTCATTTTTAATACAGCTGACAACTTTACAGAATGCAGCCTT
TTCTGAATTCTAACACATGGGTGTATATTGTTAATTATTCTTTTGGATTCTTTTGAACTTGTAC
TACTATATATAATTATTTCTAAAGCACAGACTAAGTGAGTTCTGCATATTTCTAAAGAGCCACA
GTCCCTTATTATGCAA

hide sequence

RefSeq Acc Id:

XM_039104115 ⟹ XP_038960043

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	56,033,882 - 56,084,766 (+)	NCBI

RefSeq Acc Id:

XM_039104116 ⟹ XP_038960044

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	56,033,926 - 56,085,076 (+)	NCBI

RefSeq Acc Id:

XM_039104117 ⟹ XP_038960045

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	56,033,927 - 56,085,076 (+)	NCBI

RefSeq Acc Id:

XM_039104118 ⟹ XP_038960046

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	56,033,928 - 56,084,766 (+)	NCBI

RefSeq Acc Id:

XM_039104119 ⟹ XP_038960047

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	56,033,927 - 56,085,076 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001257553	(Get FASTA)	NCBI Sequence Viewer
	NP_001257554	(Get FASTA)	NCBI Sequence Viewer
	NP_446332	(Get FASTA)	NCBI Sequence Viewer
	XP_006234406	(Get FASTA)	NCBI Sequence Viewer
	XP_006234408	(Get FASTA)	NCBI Sequence Viewer
	XP_017446921	(Get FASTA)	NCBI Sequence Viewer
	XP_038960043	(Get FASTA)	NCBI Sequence Viewer
	XP_038960044	(Get FASTA)	NCBI Sequence Viewer
	XP_038960045	(Get FASTA)	NCBI Sequence Viewer
	XP_038960046	(Get FASTA)	NCBI Sequence Viewer
	XP_038960047	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA89163	(Get FASTA)	NCBI Sequence Viewer
	AAA89164	(Get FASTA)	NCBI Sequence Viewer
	AAA89165	(Get FASTA)	NCBI Sequence Viewer
	AAH78764	(Get FASTA)	NCBI Sequence Viewer
	CAA39610	(Get FASTA)	NCBI Sequence Viewer
	EDL79094	(Get FASTA)	NCBI Sequence Viewer
	EDL79095	(Get FASTA)	NCBI Sequence Viewer
	EDL79096	(Get FASTA)	NCBI Sequence Viewer
	Q62871	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_446332 ⟸ NM_053880
- Peptide Label:	isoform 1
- UniProtKB:	G3V9V3 (UniProtKB/TrEMBL), Q6AZ35 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDKSELKAELERKKQRLAQIREEKKRKEEERKKKETDQKKEAAVSVQEESDLEKKRREAEALL QSMGLTTDSPIVFSEHWVPPPMSPSSKSVSTPSEAGSQDSGDGAVGSRTLHWDTDPSALQLHSD SDLGRGPIKLGMAKITQVDFPPREIVTYTKETQTPVTAQPKEDEEEEDDVAAPKPPVEPEEEKI LKKDEENDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSGRDLEDKE GEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEEAPHEPDGVALVWNMKY KKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRTPVQRTPLSAAAHTHPV YCVNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSMSFPVGDVNNFV VGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHAAVGAVDFSHLFVTSSFDWTVKLWTTK NNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGMGRLDLWNLNNDTEVPTASISVEGNPALNRV RWTHSGREIAVGDSEGQIVIYDVGEQIAVPRNDEWARFGRTLAEINASRADAEEEAATRIPA hide sequence

RefSeq Acc Id:	NP_001257553 ⟸ NM_001270624
- Peptide Label:	isoform 2
- UniProtKB:	Q6AZ35 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDKSELKAELERKKQRLAQIREEKKRKEEERKKKETDQKKEAAVSVQEESDLEKKRREAEALL QSMGLTTDSPIVPPPMSPSSKSVSTPSEAGSQDSGDGAVGSRTLHWDTDPSALQLHSDSDLGRG PIKLGMAKITQVDFPPREIVTYTKETQTPVTAQPKEDEEEEDDVAAPKPPVEPEEEKILKKDEE NDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSGRDLEDKEGEIQAG AKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEEAPHEPDGVALVWNMKYKKTTPE YVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVV GTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSMSFPVGDVNNFVVGSEEG SVYTACRHGSKAGISEMFEGHQGPITGIHCHAAVGAVDFSHLFVTSSFDWTVKLWTTKNNKPLY SFEDNSDYVYDVMWSPTHPALFACVDGMGRLDLWNLNNDTEVPTASISVEGNPALNRVRWTHSG REIAVGDSEGQIVIYDVGEQIAVPRNDEWARFGRTLAEINASRADAEEEAATRIPA hide sequence

RefSeq Acc Id:	NP_001257554 ⟸ NM_001270625
- Peptide Label:	isoform 3
- UniProtKB:	D3ZU74 (UniProtKB/TrEMBL), Q6AZ35 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDKSELKAELERKKQRLAQIREEKKRKEEERKKKETDQKKEAAVSVQEESDLEKKRREAEALL QSMGLTTDSPIVPPPMSPSSKSVSTPSEAGSQDSGDGAVGSRRGPIKLGMAKITQVDFPPREIV TYTKETQTPVTAQPKEDEEEEDDVAAPKPPVEPEEEKILKKDEENDSKAPPHELTEEEKQQILH SEEFLSFFDHSTRIVERALSEQINIFFDYSGRDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVV SCLDWSSQYPELLVASYNNNEEAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKFHPN LVVGGTYSGQIVLWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSW SLDMLSHPQDSMELVHKQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEG HQGPITGIHCHAAVGAVDFSHLFVTSSFDWTVKLWTTKNNKPLYSFEDNSDYVYDVMWSPTHPA LFACVDGMGRLDLWNLNNDTEVPTASISVEGNPALNRVRWTHSGREIAVGDSEGQIVIYDVGEQ IAVPRNDEWARFGRTLAEINASRADAEEEAATRIPA hide sequence

RefSeq Acc Id:	XP_006234406 ⟸ XM_006234344
- Peptide Label:	isoform X3
- UniProtKB:	Q6AZ35 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDKSELKAELERKKQRLAQIREEKKRKEEERKKKETDQKKEAAVSVQEESDLEKKRREAEALL QSMGLTTDSPIVPPPMSPSSKSVSTPSEAGSQDSGDGAVGSRTLHWDTDPSALQLHSDSDLGRG PIKLGMAKITQVDFPPREIVTYTKETQTPVTAQPKEDEEEEDDVAAPKPPVEPEEEKILKKDEE NDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSGRDLEDKEGEIQAG AKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEEAPHEPDGVALVWNMKYKKTTPE YVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVV GTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSMSFPVGDVNNFVVGSEEG SVYTACRHGSKAGISEMFEGHQGPITGIHCHAAVGAVDFSHLFVTSSFDWTVKLWTTKNNKPLY SFEDNSDYVYDVMWSPTHPALFACVDGMGRLDLWNLNNDTEVPTASISVEGNPALNRVRWTHSG REIAVGDSEGQIVIYDVGEQIAVPRNDEWARFGRTLAEINASRADAEEEAATRIPA hide sequence

RefSeq Acc Id:	XP_006234408 ⟸ XM_006234346
- Peptide Label:	isoform X6
- UniProtKB:	D3ZU74 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDKSELKAELERKKQRLAQIREEKKRKEEERKKKETDQKKEAAVSVQEESDLEKKRREAEALL QSMGLTTDSPIVPPPMSPSSKSVSTPSEAGSQDSGDGAVGSRRGPIKLGMAKITQVDFPPREIV TYTKETQTPVTAQPKEDEEEEDDVAAPKPPVEPEEEKILKKDEENDSKAPPHELTEEEKQQILH SEEFLSFFDHSTRIVERALSEQINIFFDYSGRDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVV SCLDWSSQYPELLVASYNNNEEAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKFHPN LVVGGTYSGQIVLWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSW SLDMLSHPQDSMELVHKQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEG HQGPITGIHCHAAVGAVDFSHLFVTSSFDWTVKLWTTKNNKPLYSFEDNSDYVYDVMWSPTHPA LFACVDGMGRLDLWNLNNDTEVPTASISVEGNPALNRVRWTHSGREIAVGDSEGQIVIYDVGEQ IAVPRNDEWARFGRTLAEINASRADAEEEAATRIPA hide sequence

RefSeq Acc Id:	XP_017446921 ⟸ XM_017591432
- Peptide Label:	isoform X1
- UniProtKB:	G3V9V3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDKSELKAELERKKQRLAQIREEKKRKEEERKKKETDQKKEAAVSVQEESDLEKKRREAEALL QSMGLTTDSPIVFSEHWVPPPMSPSSKSVSTPSEAGSQDSGDGAVGSRTLHWDTDPSALQLHSD SDLGRGPIKLGMAKITQVDFPPREIVTYTKETQTPVTAQPKEDEEEEDDVAAPKPPVEPEEEKI LKKDEENDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSGRDLEDKE GEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEEAPHEPDGVALVWNMKY KKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRTPVQRTPLSAAAHTHPV YCVNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSMSFPVGDVNNFV VGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHAAVGAVDFSHLFVTSSFDWTVKLWTTK NNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGMGRLDLWNLNNDTEVPTASISVEGNPALNRV RWTHSGREIAVGDSEGQIVIYDVGEQIAVPRNDEWARFGRTLAEINASRADAEEEAATRIPA hide sequence

RefSeq Acc Id:

ENSRNOP00000060919 ⟸ ENSRNOT00000067729

RefSeq Acc Id:

ENSRNOP00000013400 ⟸ ENSRNOT00000013400

RefSeq Acc Id:

ENSRNOP00000042414 ⟸ ENSRNOT00000047243

RefSeq Acc Id:	XP_038960043 ⟸ XM_039104115
- Peptide Label:	isoform X1
- UniProtKB:	G3V9V3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960044 ⟸ XM_039104116
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038960045 ⟸ XM_039104117
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038960047 ⟸ XM_039104119
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038960046 ⟸ XM_039104118
- Peptide Label:	isoform X5

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62871-F1-model_v2	AlphaFold	Q62871	1-638	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692134

Promoter ID:

EPDNEW_R2658

Type:

initiation region

Name:

Dync1i2_1

Description:

dynein cytoplasmic 1 intermediate chain 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R2659

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	57,817,745 - 57,817,805	EPDNEW

RGD ID:

13692135

Promoter ID:

EPDNEW_R2659

Type:

multiple initiation site

Name:

Dync1i2_2

Description:

dynein cytoplasmic 1 intermediate chain 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R2658

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	57,817,939 - 57,817,999	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620174	AgrOrtholog
BioCyc Gene	G2FUF-49473	BioCyc
Ensembl Genes	ENSRNOG00000009781	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000013400	ENTREZGENE
	ENSRNOP00000013400.4	UniProtKB/TrEMBL
	ENSRNOP00000042414	ENTREZGENE
	ENSRNOP00000042414.2	UniProtKB/TrEMBL
	ENSRNOP00000060919	ENTREZGENE
	ENSRNOP00000060919.3	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000013400	ENTREZGENE
	ENSRNOT00000013400.7	UniProtKB/TrEMBL
	ENSRNOT00000047243	ENTREZGENE
	ENSRNOT00000047243.5	UniProtKB/TrEMBL
	ENSRNOT00000067729	ENTREZGENE
	ENSRNOT00000067729.5	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7113840	IMAGE-MGC_LOAD
InterPro	DYNC1I1/DYNC1I2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:116659	UniProtKB/TrEMBL
MGC_CLONE	MGC:93277	IMAGE-MGC_LOAD
NCBI Gene	116659	ENTREZGENE
PANTHER	CYTOPLASMIC DYNEIN 1 INTERMEDIATE CHAIN 2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DYNEIN INTERMEDIATE CHAIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Dynein_IC2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Dync1i2	PhenoGen
PROSITE	WD_REPEATS_2	UniProtKB/Swiss-Prot
	WD_REPEATS_REGION	UniProtKB/Swiss-Prot
SMART	WD40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF50978	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	D3ZU74	ENTREZGENE, UniProtKB/TrEMBL
	DC1I2_RAT	UniProtKB/Swiss-Prot
	G3V9V3	ENTREZGENE, UniProtKB/TrEMBL
	Q62871	ENTREZGENE
	Q6AZ35	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	Q62872	UniProtKB/Swiss-Prot
	Q62873	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-19	Dync1i2	dynein cytoplasmic 1 intermediate chain 2	Dncic2	dynein, cytoplasmic, intermediate chain 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	Dncic2	dynein, cytoplasmic, intermediate chain 2		dynein, cytoplasmic, intermediate polypeptide 2	Name updated	1299863	APPROVED
2004-01-09	Dncic2		Dnci2	dynein, cytoplasmic, intermediate polypeptide 2	Symbol updated to reflect Human and Mouse nomenclature	625702	APPROVED
2002-08-07	Dnci2	dynein, cytoplasmic, intermediate polypeptide 2			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_function	may bind organelles via interaction with the p150Glued doublet of the dynactic complex	728206
gene_physical_interaction	binds with p150Glued via aa 1-123 of dncic2 and aa 200-811 of p150Glued	728206

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)