| 1582238 | Bw68 | Body weight QTL 68 | 3.2 | 0.0064 | body mass (VT:0001259) | body weight (CMO:0000012) | 3 | 53184593 | 115665732 | Rat |
| 1582239 | Epfw1 | Epididymal fat weight QTL 1 | 4.5 | 0.0006 | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 3 | 53184593 | 115665732 | Rat |
| 2298542 | Neuinf11 | Neuroinflammation QTL 11 | 3.9 | | nervous system integrity trait (VT:0010566) | spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126) | 3 | 15005422 | 76927699 | Rat |
| 1358362 | Srcrt2 | Stress Responsive Cort QTL 2 | 2.78 | | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 3 | 38192233 | 133483320 | Rat |
| 737818 | Hcar12 | Hepatocarcinoma resistance QTL 12 | 2.6 | | liver integrity trait (VT:0010547) | volume of individual liver tumorous lesion (CMO:0001078) | 3 | 29463235 | 118376539 | Rat |
| 1582218 | Bw74 | Body weight QTL 74 | 3.9 | 0.0021 | body mass (VT:0001259) | body weight (CMO:0000012) | 3 | 53184593 | 115665732 | Rat |
| 1581568 | Rf53 | Renal function QTL 53 | | | urine total protein amount (VT:0000032) | urine protein excretion rate to body weight ratio (CMO:0001099) | 3 | 56395968 | 161299569 | Rat |
| 9590286 | Uminl1 | Urine mineral level QTL 1 | 3.5 | 0.001 | urine mineral amount (VT:0015086) | urine electrolyte level (CMO:0000593) | 3 | 28249687 | 73249687 | Rat |
| 724523 | Tsu1 | Thymus enlargement suppressive QTL 1 | 3.84 | | thymus mass (VT:0004954) | thymus weight to body weight ratio (CMO:0000612) | 3 | 50437504 | 115638231 | Rat |
| 8662816 | Vetf4 | Vascular elastic tissue fragility QTL 4 | 4 | | renal artery integrity trait (VT:0010642) | number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563) | 3 | 59242096 | 157323038 | Rat |
| 1581503 | Cm58 | Cardiac mass QTL 58 | 2.7 | 0.05 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 3 | 43827364 | 121056321 | Rat |
| 2292613 | Ept16 | Estrogen-induced pituitary tumorigenesis QTL 16 | 8.3 | | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 3 | 47233430 | 110362260 | Rat |
| 731180 | Bp152 | Blood pressure QTL 152 | | 0.03 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 3 | 53781112 | 91609953 | Rat |
| 61356 | Bp37 | Blood pressure QTL 37 | 3 | | blood pressure trait (VT:0000183) | systolic blood pressure (CMO:0000004) | 3 | 30684642 | 75684642 | Rat |
| 1358905 | Hrtrt17 | Heart rate QTL 17 | 5.9 | 0.000014 | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 3 | 10861912 | 89878372 | Rat |
| 8694196 | Abfw2 | Abdominal fat weight QTL 2 | 16.58 | 0.001 | visceral adipose mass (VT:0010063) | abdominal fat pad weight to body weight ratio (CMO:0000095) | 3 | 28249687 | 73249687 | Rat |
| 2301971 | Cm71 | Cardiac mass QTL 71 | 4.63 | | heart left ventricle mass (VT:0007031) | heart left ventricle weight (CMO:0000776) | 3 | 41874578 | 155617519 | Rat |
| 1358885 | Bp251 | Blood pressure QTL 251 | 3.8 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 3 | 14489145 | 121056321 | Rat |
| 2301970 | Bw81 | Body weight QTL 81 | 5.19 | | body mass (VT:0001259) | body weight (CMO:0000012) | 3 | 41874578 | 155617519 | Rat |
| 1582249 | Bw77 | Body weight QTL 77 | 3.2 | 0.0025 | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 3 | 53184593 | 64655484 | Rat |
| 2290452 | Scl56 | Serum cholesterol level QTL 56 | 2.26 | | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 3 | 1 | 91609953 | Rat |
| 12879868 | Am6 | Aortic mass QTL 6 | | 0.001 | aorta mass (VT:0002845) | aorta weight to aorta length to body weight ratio (CMO:0002722) | 3 | 31426403 | 70668733 | Rat |
| 11565451 | Bw177 | Body weight QTL 177 | | 0.002 | body mass (VT:0001259) | body weight (CMO:0000012) | 3 | 31426403 | 70668733 | Rat |
| 1358888 | Bp264 | Blood pressure QTL 264 | 4.43 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 3 | 14489145 | 121056321 | Rat |
| 11565452 | Kidm57 | Kidney mass QTL 57 | | 0.001 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 3 | 31426403 | 70668733 | Rat |
| 12879866 | Cm94 | Cardiac mass QTL 94 | | 0.001 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 3 | 31426403 | 70668733 | Rat |
| 12879867 | Cm95 | Cardiac mass QTL 95 | | 0.047 | heart right ventricle mass (VT:0007033) | heart right ventricle weight to body weight ratio (CMO:0000914) | 3 | 31426403 | 70668733 | Rat |
| 1300178 | Hrtrt4 | Heart rate QTL 4 | 3.74 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 3 | 43827364 | 90905114 | Rat |
| 61377 | Edpm3 | Estrogen-dependent pituitary mass QTL 3 | 7.05 | 0.038 | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 3 | 53184692 | 89878207 | Rat |
| 2302055 | Pia30 | Pristane induced arthritis QTL 30 | 3.5 | 0.001 | blood autoantibody amount (VT:0003725) | serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111) | 3 | 27936919 | 72936919 | Rat |
| 1331795 | Rf30 | Renal function QTL 30 | 3.708 | | urine potassium amount (VT:0010539) | urine potassium level (CMO:0000128) | 3 | 39454637 | 89115240 | Rat |
| 70216 | Cm14 | Cardiac mass QTL 14 | 2.1 | | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 3 | 31172320 | 163586636 | Rat |
| 1354589 | Bw31 | Body weight QTL 31 | 3.3 | | body mass (VT:0001259) | body weight (CMO:0000012) | 3 | 33703347 | 78196190 | Rat |
| 2303593 | Gluco46 | Glucose level QTL 46 | 3 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 3 | 28468571 | 73468571 | Rat |
| 1354590 | Despr11 | Despair related QTL 11 | | 0.000031 | locomotor behavior trait (VT:0001392) | amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958) | 3 | 28468571 | 73468571 | Rat |
| 2292591 | Esta4 | Estrogen-induced thymic atrophy QTL 4 | | | thymus mass (VT:0004954) | thymus wet weight (CMO:0000855) | 3 | 47233211 | 147415807 | Rat |
| 1331777 | Bw24 | Body weight QTL 24 | 3.503 | | body mass (VT:0001259) | body weight (CMO:0000012) | 3 | 39454637 | 89115240 | Rat |
| 631647 | Bp122 | Blood pressure QTL 122 | 6.2 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 3 | 30684642 | 75684642 | Rat |
| 1300169 | Bp177 | Blood pressure QTL 177 | 2.96 | | arterial blood pressure trait (VT:2000000) | blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) | 3 | 33703347 | 61017857 | Rat |
| 1559282 | Emca5 | Estrogen-induced mammary cancer QTL 5 | 3.9 | | mammary gland integrity trait (VT:0010552) | percentage of study population developing mammary tumors during a period of time (CMO:0000948) | 3 | 43827364 | 169034231 | Rat |
| 2302276 | Bw82 | Body weight QTL 82 | 4.32 | | body mass (VT:0001259) | body weight (CMO:0000012) | 3 | 39454637 | 62951183 | Rat |
| 738019 | Anxrr10 | Anxiety related response QTL 10 | 3.9 | | exploratory behavior trait (VT:0010471) | number of entries into a discrete space in an experimental apparatus (CMO:0000960) | 3 | 38517803 | 83517803 | Rat |
| 9590136 | Scort3 | Serum corticosterone level QTL 3 | 23.37 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 3 | 28249687 | 73249687 | Rat |
| 10450804 | Scl70 | Serum cholesterol level QTL 70 | 4.7 | 0.001 | blood LDL cholesterol amount (VT:0000181) | blood low density lipoprotein cholesterol level (CMO:0000053) | 3 | 20714090 | 65714090 | Rat |
| 61419 | Cia11 | Collagen induced arthritis QTL 11 | 5.6 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 3 | 30356773 | 98535386 | Rat |
| 1354597 | Kidm13 | Kidney mass QTL 13 | 2.9 | | kidney mass (VT:0002707) | right kidney wet weight (CMO:0000082) | 3 | 41874578 | 104104347 | Rat |
| 8552950 | Pigfal12 | Plasma insulin-like growth factor 1 level QTL 12 | 7.3 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 3 | 28249687 | 73249687 | Rat |
| 631676 | Cm8 | Cardiac mass QTL 8 | 7.03 | 0.0001 | aorta mass (VT:0002845) | aorta weight (CMO:0000076) | 3 | 16954708 | 61954708 | Rat |
| 10450794 | Scl69 | Serum cholesterol level QTL 69 | 6.3 | 0.001 | blood LDL cholesterol amount (VT:0000181) | blood low density lipoprotein cholesterol level (CMO:0000053) | 3 | 20714090 | 65714090 | Rat |
| 8694386 | Bw159 | Body weight QTL 159 | 4.52 | 0.001 | body lean mass (VT:0010483) | lean tissue morphological measurement (CMO:0002184) | 3 | 28249687 | 73249687 | Rat |
| 1354604 | Bw36 | Body weight QTL 36 | 2.9 | | body mass (VT:0001259) | body weight (CMO:0000012) | 3 | 33703347 | 104104347 | Rat |
| 631665 | Bw8 | Body weight QTL 8 | 5.5 | | body mass (VT:0001259) | body weight (CMO:0000012) | 3 | 50437042 | 119183768 | Rat |
| 2301400 | Cm68 | Cardiac mass QTL 68 | | 0.001 | heart mass (VT:0007028) | heart wet weight to body weight ratio (CMO:0002408) | 3 | 31426403 | 70668733 | Rat |
| 1358186 | Ept2 | Estrogen-induced pituitary tumorigenesis QTL 2 | 8.3 | | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 3 | 47233430 | 110362260 | Rat |
