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Gene: Hoxd3 (homeo box D3) Rattus norvegicus
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Symbol: Hoxd3
Name: homeo box D3
Description: Predicted to have DNA-binding transcription factor activity and RNA polymerase II proximal promoter sequence-specific DNA binding activity. Predicted to be involved in several processes, including nervous system development; skeletal system development; and thyroid gland development. Predicted to localize to the aggresome and nuclear body. Orthologous to human HOXD3 (homeobox D3); INTERACTS WITH ammonium chloride; bis(2-ethylhexyl) phthalate; Butylbenzyl phthalate.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: homeo box D3 (mapped); Homeobox gene D3; homeobox protein Hox-D3; homeobox protein R6; Hox4r6; Hoxd3_mapped
Orthologs:
Homo sapiens (human) : HOXD3 (homeobox D3)  HGNC  Alliance
Mus musculus (house mouse) : Hoxd3 (homeobox D3)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hoxd3 (homeobox D3)
Pan paniscus (bonobo/pygmy chimpanzee) : HOXD3 (homeobox D3)
Canis lupus familiaris (dog) : HOXD3 (homeobox D3)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hoxd3 (homeobox D3)
Sus scrofa (pig) : HOXD3 (homeobox D3)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0361,650,569 - 61,670,285 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl361,658,245 - 61,670,282 (+)Ensembl
Rnor_5.0368,119,385 - 68,135,819 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4357,358,585 - 57,361,651 (+)NCBIRGSC3.4rn4RGSC3.4
Celera359,160,179 - 59,171,694 (+)NCBICelera
Cytogenetic Map3q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Hoxd3
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1588601
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.