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Gene: Hoxd13 (homeo box D13) Rattus norvegicus
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Symbol: Hoxd13
Name: homeo box D13
Description: Exhibits sequence-specific double-stranded DNA binding activity. Involved in embryonic hindgut morphogenesis; prostate gland development; and response to testosterone. Localizes to the nucleus. Biomarker of hypospadias. Human ortholog(s) of this gene implicated in brachydactyly (multiple); brachydactyly-syndactyly syndrome; clubfoot; and cryptorchidism. Orthologous to human HOXD13 (homeobox D13); INTERACTS WITH bisphenol A; dibutyl phthalate; Ethylenethiourea.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: homeobox protein Hox-D13; LOC288154
Orthologs:
Homo sapiens (human) : HOXD13 (homeobox D13)  HGNC  Alliance
Mus musculus (house mouse) : Hoxd13 (homeobox D13)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hoxd13 (homeobox D13)
Pan paniscus (bonobo/pygmy chimpanzee) : HOXD13 (homeobox D13)
Canis lupus familiaris (dog) : HOXD13 (homeobox D13)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hoxd13 (homeobox D13)
Sus scrofa (pig) : HOXD13 (homeobox D13)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0361,590,376 - 61,593,692 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0368,056,713 - 68,060,029 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4357,283,682 - 57,286,998 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1357,180,052 - 57,181,906 (+)NCBI
Celera359,093,007 - 59,096,323 (+)NCBICelera
Cytogenetic Map3q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Hoxd13
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1308417
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.