Ubr3 (ubiquitin protein ligase E3 component n-recognin 3)

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Gene: Ubr3 (ubiquitin protein ligase E3 component n-recognin 3) Rattus norvegicus

Analyze

Symbol:

Ubr3

Name:

ubiquitin protein ligase E3 component n-recognin 3

RGD ID:

1565257

Description:

Predicted to enable ubiquitin protein ligase activity. Involved in negative regulation of calcium ion transmembrane transport via high voltage-gated calcium channel and positive regulation of protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human UBR3 (ubiquitin protein ligase E3 component n-recognin 3); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

E3 ubiquitin-protein ligase UBR3; hypothetical protein LOC311115; LOC311115; RGD1565257; similar to zinc finger protein 650

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	54,649,803 - 54,806,779 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	54,649,992 - 54,806,247 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	58,051,353 - 58,209,059 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	66,634,951 - 66,792,643 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	64,397,333 - 64,555,042 (+)	NCBI	Rnor_WKY
Rnor_6.0	3	56,125,927 - 56,283,908 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	56,125,924 - 56,281,055 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	62,759,246 - 62,916,651 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	52,034,539 - 52,191,936 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	54,209,320 - 54,366,038 (+)	NCBI		Celera
Cytogenetic Map	3	q21-q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

acrylamide (EXP)

aflatoxin B1 (EXP)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

butanal (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

cobalt dichloride (EXP,ISO)

Cuprizon (EXP)

dicrotophos (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

folic acid (ISO)

fulvestrant (ISO)

glafenine (EXP)

hydrogen peroxide (ISO)

methyl methanesulfonate (ISO)

N,N-diethyl-m-toluamide (EXP)

paracetamol (ISO)

pentachlorophenol (ISO)

permethrin (EXP)

potassium chromate (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

succimer (ISO)

testosterone (ISO)

thapsigargin (ISO)

theophylline (ISO)

topotecan (EXP)

urethane (ISO)

valdecoxib (EXP)

valproic acid (EXP,ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

embryo development ending in birth or egg hatching (ISO)

in utero embryonic development (ISO)

negative regulation of calcium ion transmembrane transport via high voltage-gated calcium channel (IMP)

olfactory behavior (ISO)

positive regulation of protein catabolic process (IMP)

protein ubiquitination (IBA,IEA)

sensory perception of smell (ISO)

suckling behavior (ISO)

ubiquitin-dependent protein catabolic process (ISO)

ubiquitin-dependent protein catabolic process via the N-end rule pathway (IBA)

Cellular Component

cytoplasm (IBA)

ubiquitin ligase complex (IBA)

Molecular Function

protein binding (ISO)

ubiquitin protein ligase activity (IBA,ISO)

ubiquitin-protein transferase activity (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Modulation of Ca2+-induced Ca2+ release by ubiquitin protein ligase E3 component n-recognin UBR3 and 6 in cardiac myocytes.	Ma XE, etal., Channels (Austin). 2020 Dec;14(1):326-335. doi: 10.1080/19336950.2020.1824957.
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:17462990	PMID:26059563

Genomics

Comparative Map Data

Ubr3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	54,649,803 - 54,806,779 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	54,649,992 - 54,806,247 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	58,051,353 - 58,209,059 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	66,634,951 - 66,792,643 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	64,397,333 - 64,555,042 (+)	NCBI	Rnor_WKY
Rnor_6.0	3	56,125,927 - 56,283,908 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	56,125,924 - 56,281,055 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	62,759,246 - 62,916,651 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	52,034,539 - 52,191,936 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	54,209,320 - 54,366,038 (+)	NCBI		Celera
Cytogenetic Map	3	q21-q22	NCBI

UBR3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	169,827,454 - 170,084,131 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	2	169,827,454 - 170,084,131 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	170,683,964 - 170,940,641 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	170,514,548 - 170,648,883 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	170,631,808 - 170,766,144	NCBI
Celera	2	164,300,400 - 164,556,964 (+)	NCBI		Celera
Cytogenetic Map	2	q31.1	NCBI
HuRef	2	162,572,017 - 162,828,315 (+)	NCBI		HuRef
CHM1_1	2	170,689,889 - 170,947,009 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	170,305,020 - 170,561,615 (+)	NCBI		T2T-CHM13v2.0

Ubr3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	69,727,276 - 69,854,354 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	69,727,590 - 69,854,357 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	69,896,932 - 70,024,010 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	69,897,246 - 70,024,013 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	69,735,303 - 69,862,070 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	69,771,018 - 69,825,433 (+)	NCBI		MGSCv36	mm8
Celera	2	71,566,709 - 71,692,184 (+)	NCBI		Celera
Cytogenetic Map	2	C2	NCBI

Ubr3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955449	4,585,494 - 4,773,413 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955449	4,583,114 - 4,773,474 (-)	NCBI	ChiLan1.0	ChiLan1.0

UBR3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2B	174,564,607 - 174,827,776 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	174,564,671 - 174,827,776 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2B	57,099,882 - 57,366,981 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

UBR3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	36	14,537,900 - 14,723,942 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	36	14,537,921 - 14,721,790 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	36	14,510,717 - 14,734,913 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	36	14,617,883 - 14,845,639 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	36	14,617,571 - 14,844,702 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	36	14,700,805 - 14,925,261 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	36	14,693,007 - 14,919,031 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	36	14,804,822 - 15,030,558 (+)	NCBI		UU_Cfam_GSD_1.0

Ubr3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	131,771,374 - 131,983,529 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936509	324,953 - 535,141 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936509	325,277 - 537,423 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UBR3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	76,135,494 - 76,360,823 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	76,135,456 - 76,360,819 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	85,315,347 - 85,541,476 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UBR3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	55,354,367 - 55,616,810 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	55,354,365 - 55,614,520 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	143,913,482 - 144,182,024 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ubr3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624787	7,358,441 - 7,608,483 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624787	7,358,426 - 7,610,872 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ubr3
539 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1176
Count of miRNA genes:	286
Interacting mature miRNAs:	359
Transcripts:	ENSRNOT00000011380, ENSRNOT00000012059, ENSRNOT00000072395
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10861912	89878372	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	15005422	76927699	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	16954708	61954708	Rat
10450804	Scl70	Serum cholesterol level QTL 70	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
10450794	Scl69	Serum cholesterol level QTL 69	6.3	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
2302055	Pia30	Pristane induced arthritis QTL 30	3.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	3	27936919	72936919	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	28249687	73249687	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	28249687	73249687	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	28249687	73249687	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	28249687	73249687	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	28249687	73249687	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	28468571	73468571	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	28468571	73468571	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	30356773	98535386	Rat
61356	Bp37	Blood pressure QTL 37	3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	30684642	75684642	Rat
631647	Bp122	Blood pressure QTL 122	6.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	30684642	75684642	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
11565451	Bw177	Body weight QTL 177		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	3	31426403	70668733	Rat
11565452	Kidm57	Kidney mass QTL 57		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	31426403	70668733	Rat
12879866	Cm94	Cardiac mass QTL 94		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	31426403	70668733	Rat
12879867	Cm95	Cardiac mass QTL 95		0.047	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	31426403	70668733	Rat
12879868	Am6	Aortic mass QTL 6		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	31426403	70668733	Rat
2301400	Cm68	Cardiac mass QTL 68		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	31426403	70668733	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	33703347	61017857	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	78196190	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	104104347	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	38517803	83517803	Rat
2302276	Bw82	Body weight QTL 82	4.32		body mass (VT:0001259)	body weight (CMO:0000012)	3	39454637	62951183	Rat
1331777	Bw24	Body weight QTL 24	3.503		body mass (VT:0001259)	body weight (CMO:0000012)	3	39454637	89115240	Rat
1331795	Rf30	Renal function QTL 30	3.708		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	3	39454637	89115240	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	41874578	104104347	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	43827364	90905114	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	50437504	115638231	Rat
1582249	Bw77	Body weight QTL 77	3.2	0.0025	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	64655484	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	115665732	Rat
61377	Edpm3	Estrogen-dependent pituitary mass QTL 3	7.05	0.038	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	53184692	89878207	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	53781112	91609953	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	53781112	91609953	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	53781112	91609953	Rat

Markers in Region

D3Chm64

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	54,740,735 - 54,740,965 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	56,217,734 - 56,217,961	NCBI	Rnor6.0
Rnor_5.0	3	62,850,379 - 62,850,606	UniSTS	Rnor5.0
RGSC_v3.4	3	52,127,226 - 52,127,454	RGD	RGSC3.4
RGSC_v3.4	3	52,127,227 - 52,127,454	UniSTS	RGSC3.4
Celera	3	54,300,329 - 54,300,560	UniSTS
Cytogenetic Map	3	q21	UniSTS

D3Chm26

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	54,739,476 - 54,739,641 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	56,216,475 - 56,216,639	NCBI	Rnor6.0
Rnor_5.0	3	62,849,120 - 62,849,284	UniSTS	Rnor5.0
RGSC_v3.4	3	52,125,967 - 52,126,132	RGD	RGSC3.4
RGSC_v3.4	3	52,125,968 - 52,126,132	UniSTS	RGSC3.4
Celera	3	54,299,070 - 54,299,234	UniSTS
Cytogenetic Map	3	q21	UniSTS

BE120211

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	54,804,591 - 54,804,761 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	56,281,721 - 56,281,890	NCBI	Rnor6.0
Rnor_5.0	3	62,914,464 - 62,914,633	UniSTS	Rnor5.0
RGSC_v3.4	3	52,191,711 - 52,191,880	UniSTS	RGSC3.4
Celera	3	54,363,851 - 54,364,020	UniSTS
RH 3.4 Map	4	661.37	UniSTS
Cytogenetic Map	3	q21	UniSTS

RH138085

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	54,724,975 - 54,725,140 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	56,200,657 - 56,200,821	NCBI	Rnor6.0
Rnor_5.0	3	62,834,957 - 62,835,121	UniSTS	Rnor5.0
RGSC_v3.4	3	52,110,866 - 52,111,030	UniSTS	RGSC3.4
Celera	3	54,284,569 - 54,284,733	UniSTS
RH 3.4 Map	3	603.43	UniSTS
Cytogenetic Map	3	q21	UniSTS

MARC_11813-11814:1029266043:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	54,803,452 - 54,803,911 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	56,280,582 - 56,281,040	NCBI	Rnor6.0
Rnor_5.0	3	62,913,325 - 62,913,783	UniSTS	Rnor5.0
RGSC_v3.4	3	52,190,572 - 52,191,030	UniSTS	RGSC3.4
Celera	3	54,362,712 - 54,363,170	UniSTS
Cytogenetic Map	3	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	42	57	41	19	41	8	11	74	35	38	11	8
Low		1									3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005501856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005501857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CA503549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000011380 ⟹ ENSRNOP00000011380

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	54,649,992 - 54,806,247 (+)	Ensembl
Rnor_6.0 Ensembl	3	56,125,924 - 56,281,055 (+)	Ensembl

RefSeq Acc Id:

NM_001134550 ⟹ NP_001128022

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	54,650,120 - 54,806,251 (+)	NCBI

RefSeq Acc Id:

XM_039104847 ⟹ XP_038960775

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	54,649,803 - 54,806,779 (+)	NCBI

RefSeq Acc Id:

XM_039104848 ⟹ XP_038960776

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	54,649,803 - 54,806,779 (+)	NCBI

RefSeq Acc Id:

XM_039104849 ⟹ XP_038960777

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	54,649,803 - 54,806,779 (+)	NCBI

RefSeq Acc Id:

XM_039104850 ⟹ XP_038960778

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	54,649,803 - 54,806,779 (+)	NCBI

RefSeq Acc Id:

XM_039104851 ⟹ XP_038960779

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	54,649,803 - 54,806,779 (+)	NCBI

RefSeq Acc Id:

XR_005501856

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	54,649,803 - 54,775,269 (+)	NCBI

RefSeq Acc Id:

XR_005501857

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	54,649,803 - 54,775,269 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128022	(Get FASTA)	NCBI Sequence Viewer
	XP_038960775	(Get FASTA)	NCBI Sequence Viewer
	XP_038960776	(Get FASTA)	NCBI Sequence Viewer
	XP_038960777	(Get FASTA)	NCBI Sequence Viewer
	XP_038960778	(Get FASTA)	NCBI Sequence Viewer
	XP_038960779	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL79078	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

ENSRNOP00000011380 ⟸ ENSRNOT00000011380

RefSeq Acc Id:	XP_038960775 ⟸ XM_039104847
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038960777 ⟸ XM_039104849
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038960778 ⟸ XM_039104850
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038960776 ⟸ XM_039104848
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038960779 ⟸ XM_039104851
- Peptide Label:	isoform X5

RefSeq Acc Id:

NP_001128022 ⟸ NM_001134550

Protein Domains

UBR-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A7F0-F1-model_v2	AlphaFold	D4A7F0	1-1890	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692130

Promoter ID:

EPDNEW_R2650

Type:

initiation region

Name:

Ubr3_1

Description:

ubiquitin protein ligase E3 component n-recognin 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	56,125,916 - 56,125,976	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565257	AgrOrtholog
BioCyc Gene	G2FUF-49495	BioCyc
Ensembl Genes	ENSRNOG00000008616	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000011380	ENTREZGENE
	ENSRNOP00000011380.8	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000011380	ENTREZGENE
	ENSRNOT00000011380.9	UniProtKB/TrEMBL
Gene3D-CATH	2.10.110.30	UniProtKB/TrEMBL
InterPro	E3_ligase_UBR-like_C	UniProtKB/TrEMBL
	UBR1-like	UniProtKB/TrEMBL
	Znf_N-recognin	UniProtKB/TrEMBL
NCBI Gene	311115	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE UBR3	UniProtKB/TrEMBL
	PTHR21497	UniProtKB/TrEMBL
Pfam	PRT6_C	UniProtKB/TrEMBL
	zf-UBR	UniProtKB/TrEMBL
PhenoGen	Ubr3	PhenoGen
PROSITE	ZF_UBR	UniProtKB/TrEMBL
SMART	ZnF_UBR1	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
UniProt	D4A7F0_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-12	Ubr3	ubiquitin protein ligase E3 component n-recognin 3	RGD1565257	similar to zinc finger protein 650	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1565257	similar to zinc finger protein 650	RGD1565257_predicted	similar to zinc finger protein 650 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1565257_predicted	similar to zinc finger protein 650 (predicted)	LOC311115	similar to zinc finger protein 650	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC311115	similar to zinc finger protein 650			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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