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Gene: Hoxd9 (homeo box D9) Rattus norvegicus
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Symbol: Hoxd9
Name: homeo box D9
Description: Predicted to have DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including animal organ development; limb morphogenesis; and regulation of transcription by RNA polymerase II. Predicted to localize to the nucleolus. Orthologous to human HOXD9 (homeobox D9); INTERACTS WITH bisphenol A; dibutyl phthalate; (+)-catechin (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: homeobox Hox-D9; homeobox protein Hox-D9; LOC366083; LOC688999; MGC189507; similar to Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4)
Orthologs:
Homo sapiens (human) : HOXD9 (homeobox D9)  HGNC  Alliance
Mus musculus (house mouse) : Hoxd9 (homeobox D9)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hoxd9 (homeobox D9)
Pan paniscus (bonobo/pygmy chimpanzee) : HOXD9 (homeobox D9)
Canis lupus familiaris (dog) : HOXD9 (homeobox D9)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hoxd9 (homeobox D9)
Sus scrofa (pig) : HOXD9 (homeobox D9)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0361,620,192 - 61,622,360 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0368,086,528 - 68,088,228 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera359,122,389 - 59,124,566 (+)NCBICelera
Cytogenetic Map3q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Hoxd9
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1582908
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.