LOC120102034 (U1 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120102034 (U1 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120102034
Name: U1 spliceosomal RNA
RGD ID: 41300198
Description: Orthologous to human RNU1-74P (RNA, U1 small nuclear 74, pseudogene).
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: U1
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8379,815,089 - 79,815,243 (-)NCBIGRCr8
mRatBN7.2359,407,641 - 59,407,795 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl359,407,641 - 59,407,795 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl359,407,641 - 59,407,795 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl361,415,635 - 61,415,799 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map3q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




LOC120102034
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8379,815,089 - 79,815,243 (-)NCBIGRCr8
mRatBN7.2359,407,641 - 59,407,795 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl359,407,641 - 59,407,795 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl359,407,641 - 59,407,795 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl361,415,635 - 61,415,799 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map3q23NCBI
RNU1-74P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381232,832,017 - 232,832,187 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1232,832,017 - 232,832,187 (-)EnsemblGRCh38hg38GRCh38
GRCh371232,967,763 - 232,967,933 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1q42.2NCBI
CHM1_11234,241,380 - 234,241,550 (-)NCBICHM1_1
T2T-CHM13v2.01232,218,415 - 232,218,585 (-)NCBIT2T-CHM13v2.0
Gm24624
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X115,255,429 - 115,255,592 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX115,255,429 - 115,255,592 (+)EnsemblGRCm39 Ensembl
GRCm38X116,345,732 - 116,345,895 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX116,345,732 - 116,345,895 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXE1NCBI
LOC119865251
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2239,982,232 - 39,982,391 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02240,526,104 - 40,526,263 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2240,526,104 - 40,526,263 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12240,213,960 - 40,214,119 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02240,269,412 - 40,269,571 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02240,260,949 - 40,261,108 (+)NCBIUU_Cfam_GSD_1.0

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Variants in LOC120102034
2 total Variants

1 to 10 of 54 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat

1 to 10 of 54 rows





GenBank Nucleotide JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000085827
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl359,407,641 - 59,407,795 (-)Ensembl

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-49345 BioCyc
Ensembl Genes ENSRNOG00000060698 Ensembl
NCBI Gene LOC120102034 ENTREZGENE
PhenoGen LOC120102034 PhenoGen
RatGTEx ENSRNOG00000060698 RatGTEx
RNAcentral URS000067756D RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120102034  U1 spliceosomal RNA  U1  U1 spliceosomal RNA  Data merged from RGD:15013519 737654 PROVISIONAL
2021-01-27 LOC120102034  U1 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U1  U1 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL